Wall clock time and date at job start Tue Mar 31 2020 21:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99909 * 2 1 4 4 C 1.34774 * 119.99931 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00333 * 0.02562 * 4 2 1 6 6 C 1.50703 * 119.99611 * 179.97438 * 4 2 1 7 7 C 1.53008 * 109.46921 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47173 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.46931 * 300.00151 * 8 7 6 10 10 C 1.50703 * 109.46937 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00100 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.64271 * 0.05219 * 12 10 9 14 14 C 1.54918 * 104.82827 * 204.07868 * 13 12 10 15 15 C 1.55157 * 101.58155 * 322.99497 * 14 13 12 16 16 O 1.42899 * 110.71725 * 277.13205 * 15 14 13 17 17 C 1.50702 * 110.71903 * 153.86325 * 15 14 13 18 18 H 1.08003 * 119.99947 * 241.45505 * 17 15 14 19 19 C 1.37875 * 119.99881 * 61.45034 * 17 15 14 20 20 N 1.31516 * 120.00466 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 120.00019 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46663 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47114 * 119.99806 * 21 19 17 24 24 H 1.48497 * 109.46987 * 240.00004 * 21 19 17 25 25 C 1.47015 * 125.64845 * 179.97438 * 12 10 9 26 26 C 1.52999 * 109.47228 * 59.99869 * 9 8 7 27 27 C 1.52995 * 109.47272 * 299.99922 * 26 9 8 28 28 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47268 * 299.99642 * 1 2 3 30 30 H 1.09005 * 109.46890 * 60.00168 * 1 2 3 31 31 H 1.08994 * 109.47384 * 270.00015 * 3 2 1 32 32 H 1.09004 * 109.46874 * 30.00448 * 3 2 1 33 33 H 1.09002 * 109.47004 * 149.99560 * 3 2 1 34 34 H 1.08994 * 109.47414 * 60.00415 * 6 4 2 35 35 H 1.08994 * 109.46855 * 59.99929 * 7 6 4 36 36 H 1.09000 * 109.46734 * 300.00510 * 7 6 4 37 37 H 1.09000 * 109.47382 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47290 * 59.99618 * 8 7 6 39 39 H 1.09003 * 109.47064 * 299.99568 * 9 8 7 40 40 H 1.08999 * 110.36633 * 85.25141 * 13 12 10 41 41 H 1.08996 * 110.37033 * 322.91522 * 13 12 10 42 42 H 1.09001 * 111.00522 * 204.91555 * 14 13 12 43 43 H 1.09000 * 110.99891 * 81.06585 * 14 13 12 44 44 H 0.96697 * 114.00297 * 298.54779 * 16 15 14 45 45 H 0.96994 * 120.00520 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.88350 * 59.56990 * 25 12 10 47 47 H 1.08998 * 109.88602 * 298.40656 * 25 12 10 48 48 H 1.09002 * 109.46609 * 60.00437 * 26 9 8 49 49 H 1.09000 * 109.46647 * 179.97438 * 26 9 8 50 50 H 1.09003 * 109.46894 * 300.00223 * 27 26 9 51 51 H 1.09000 * 109.47382 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0015 6 6 3.6459 -1.1671 -0.0011 7 6 4.1560 -2.6097 -0.0023 8 6 5.6859 -2.6097 -0.0022 9 6 6.1960 -1.8873 -1.2509 10 6 7.7030 -1.8878 -1.2512 11 8 8.3094 -2.4137 -0.3420 12 7 8.3769 -1.3039 -2.2618 13 6 7.7690 -0.6306 -3.4239 14 6 8.8503 -0.6972 -4.5312 15 6 10.1509 -0.4982 -3.7088 16 8 10.3917 0.8902 -3.4718 17 6 11.3258 -1.1329 -4.4074 18 1 11.8717 -1.9322 -3.9281 19 6 11.7037 -0.6933 -5.6584 20 7 11.0393 0.2802 -6.2419 21 14 13.1596 -1.4806 -6.5246 22 1 13.7325 -2.5448 -5.6618 23 1 12.7096 -2.0732 -7.8097 24 1 14.1942 -0.4491 -6.7905 25 6 9.8399 -1.2316 -2.3870 26 6 5.6859 -0.4448 -1.2497 27 6 4.1560 -0.4449 -1.2498 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3792 1.5835 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0096 -0.6536 0.8888 35 1 3.7923 -3.1228 -0.8924 36 1 3.7929 -3.1241 0.8875 37 1 6.0493 -3.6373 -0.0035 38 1 6.0493 -2.0965 0.8881 39 1 5.8327 -2.4005 -2.1413 40 1 7.5367 0.4067 -3.1826 41 1 6.8692 -1.1582 -3.7402 42 1 8.7186 0.1072 -5.2548 43 1 8.8449 -1.6692 -5.0245 44 1 10.5161 1.4110 -4.2770 45 1 11.3054 0.5897 -7.1217 46 1 10.2599 -2.2371 -2.4134 47 1 10.2569 -0.6754 -1.5474 48 1 6.0493 0.0682 -0.3593 49 1 6.0497 0.0698 -2.1391 50 1 3.7927 -0.9580 -2.1402 51 1 3.7926 0.5828 -1.2485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647303561.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:52 Heat of formation + Delta-G solvation = -127.979270 kcal Electronic energy + Delta-G solvation = -30847.036350 eV Core-core repulsion = 26745.835973 eV Total energy + Delta-G solvation = -4101.200378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79781 -39.73006 -37.79327 -36.79943 -35.91626 -34.38252 -32.25095 -31.83689 -30.98193 -29.59039 -28.41850 -28.18599 -26.73444 -25.30093 -23.77144 -22.76469 -22.16543 -20.44916 -19.73291 -19.39605 -18.73720 -17.29029 -17.20797 -16.55654 -16.47063 -16.08248 -15.48886 -15.09562 -15.01505 -14.70819 -14.31116 -14.27767 -14.07839 -13.59510 -13.31981 -13.15376 -13.04284 -12.96465 -12.83556 -12.46110 -12.41144 -12.18832 -12.08274 -11.99467 -11.71593 -11.48219 -11.41218 -11.36874 -11.25796 -11.10470 -10.90586 -10.66331 -10.54896 -10.47685 -10.20528 -10.12222 -9.90595 -9.43493 -9.21269 -9.03667 -8.70381 -8.25823 -8.01385 -6.31860 -4.39018 2.36447 2.69070 3.06084 3.16981 3.26234 3.31023 3.52855 4.15774 4.24943 4.44471 4.52591 4.65590 4.76606 4.90860 4.95511 4.99639 5.01063 5.04521 5.12850 5.18745 5.21359 5.30697 5.34835 5.38292 5.47507 5.51304 5.64263 5.69631 5.76902 5.81661 5.87135 5.89885 5.99968 6.01039 6.08238 6.10668 6.19008 6.29019 6.37027 6.43252 6.68071 6.87882 6.95113 6.99159 7.26458 7.31780 7.70345 7.88998 7.99509 8.11931 8.62186 8.65907 9.26874 9.35794 10.75680 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002425 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.199585 B =11542.286187 C =12106.335841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.519 3.481 5 O -0.540 6.540 6 C -0.106 4.106 7 C -0.097 4.097 8 C -0.097 4.097 9 C -0.102 4.102 10 C 0.525 3.475 11 O -0.555 6.555 12 N -0.607 5.607 13 C 0.095 3.905 14 C -0.136 4.136 15 C 0.247 3.753 16 O -0.585 6.585 17 C -0.533 4.533 18 H 0.064 0.936 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.122 3.878 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.382 0.618 45 H 0.267 0.733 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 3.718 8.101 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.069 4.069 4 C 0.308 3.692 5 O -0.416 6.416 6 C -0.127 4.127 7 C -0.135 4.135 8 C -0.135 4.135 9 C -0.124 4.124 10 C 0.313 3.687 11 O -0.434 6.434 12 N -0.339 5.339 13 C -0.027 4.027 14 C -0.175 4.175 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.571 4.571 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.000 4.000 26 C -0.154 4.154 27 C -0.156 4.156 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.232 0.768 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.089 0.911 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.940 2.763 9.104 21.196 hybrid contribution 0.772 0.022 -1.298 1.510 sum -18.169 2.784 7.807 19.970 Atomic orbital electron populations 1.21675 0.79430 1.04169 1.01147 1.47748 1.07069 1.06592 1.74454 1.22002 0.97500 0.85153 1.02206 1.20877 0.90395 0.82990 0.74962 1.90680 1.70386 1.31043 1.49519 1.21395 0.90552 0.99860 1.00937 1.21372 0.94959 0.93706 1.03444 1.21351 0.93818 1.01394 0.96931 1.21294 0.92015 0.98095 1.00968 1.20208 0.89381 0.78096 0.81035 1.90655 1.70447 1.46288 1.36007 1.48651 1.08456 1.54711 1.22119 1.22575 0.97212 0.96142 0.86820 1.23321 0.95014 1.02807 0.96311 1.19465 0.91826 0.80113 0.87932 1.86133 1.94569 1.21201 1.37505 1.21554 1.14334 1.19526 1.01736 0.91741 1.24983 0.96644 0.94599 0.96806 1.69699 1.40108 1.27514 1.16236 0.86371 0.82061 0.79357 0.79271 1.19582 1.20837 1.20762 1.22059 0.78354 1.00338 0.99226 1.21664 0.94519 0.95291 1.03885 1.21796 0.96004 1.01046 0.96725 0.89571 0.92353 0.92296 0.91833 0.91091 0.90344 0.88381 0.91119 0.91027 0.90761 0.91133 0.88787 0.91780 0.92115 0.89380 0.91475 0.76823 0.92292 0.91083 0.92202 0.91202 0.89887 0.91146 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.69 59.85 0.64 1.18 16 2 N -0.62 -5.11 3.27 -189.51 -0.62 -5.73 16 3 C 0.07 0.38 8.84 59.85 0.53 0.91 16 4 C 0.52 5.61 7.08 -10.99 -0.08 5.53 16 5 O -0.54 -7.79 15.31 5.56 0.09 -7.70 16 6 C -0.11 -0.99 1.72 -91.77 -0.16 -1.15 16 7 C -0.10 -1.05 4.49 -26.73 -0.12 -1.17 16 8 C -0.10 -1.19 4.49 -26.73 -0.12 -1.31 16 9 C -0.10 -1.34 1.87 -91.77 -0.17 -1.51 16 10 C 0.52 9.41 7.22 -10.98 -0.08 9.33 16 11 O -0.55 -11.82 16.31 5.56 0.09 -11.73 16 12 N -0.61 -11.49 3.32 -170.52 -0.57 -12.05 16 13 C 0.10 1.61 5.13 -2.52 -0.01 1.59 16 14 C -0.14 -2.81 5.47 -24.58 -0.13 -2.94 16 15 C 0.25 5.77 0.84 -89.93 -0.08 5.70 16 16 O -0.59 -14.18 13.07 -35.23 -0.46 -14.64 16 17 C -0.53 -13.71 8.22 -34.44 -0.28 -13.99 16 18 H 0.06 1.68 7.57 -52.48 -0.40 1.29 16 19 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 20 N -0.90 -22.44 10.69 55.43 0.59 -21.85 16 21 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.12 2.70 6.22 -3.07 -0.02 2.68 16 26 C -0.12 -1.24 5.01 -26.73 -0.13 -1.37 16 27 C -0.12 -1.01 4.84 -26.73 -0.13 -1.14 16 28 H 0.09 0.75 6.90 -51.93 -0.36 0.40 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.29 6.95 -51.93 -0.36 -0.07 16 32 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 33 H 0.08 0.37 6.01 -51.93 -0.31 0.06 16 34 H 0.10 0.80 7.40 -51.93 -0.38 0.42 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 40 H 0.06 1.03 7.07 -51.93 -0.37 0.66 16 41 H 0.06 0.86 7.36 -51.93 -0.38 0.48 16 42 H 0.09 1.89 7.54 -51.93 -0.39 1.49 16 43 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 44 H 0.38 9.23 7.49 45.56 0.34 9.57 16 45 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 46 H 0.07 1.62 7.66 -51.93 -0.40 1.23 16 47 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.92 4.99 -51.93 -0.26 0.66 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.08 0.53 4.53 -51.93 -0.24 0.30 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -30.69 387.02 -8.19 -38.87 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.68 Total: 9.94 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.44 Total: 4.06 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.59 Total: -39.64 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.28 Total: -34.07 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.69 -8.19 -38.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647303561.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.105 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds