Wall clock time and date at job start Tue Mar 31 2020 21:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99909 * 2 1 4 4 C 1.34774 * 119.99931 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00333 * 0.02562 * 4 2 1 6 6 C 1.50703 * 119.99611 * 179.97438 * 4 2 1 7 7 C 1.53008 * 109.46921 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47173 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.46931 * 300.00151 * 8 7 6 10 10 C 1.50703 * 109.46937 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00100 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00112 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.64271 * 0.05219 * 12 10 9 14 14 C 1.54918 * 104.82827 * 204.07868 * 13 12 10 15 15 C 1.55157 * 101.58155 * 322.99497 * 14 13 12 16 16 O 1.42899 * 110.71725 * 277.13205 * 15 14 13 17 17 C 1.50702 * 110.71903 * 153.86325 * 15 14 13 18 18 H 1.08003 * 119.99947 * 241.45505 * 17 15 14 19 19 C 1.37875 * 119.99881 * 61.45034 * 17 15 14 20 20 N 1.31516 * 120.00466 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 120.00019 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46663 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47114 * 119.99806 * 21 19 17 24 24 H 1.48497 * 109.46987 * 240.00004 * 21 19 17 25 25 C 1.47015 * 125.64845 * 179.97438 * 12 10 9 26 26 C 1.52999 * 109.47228 * 59.99869 * 9 8 7 27 27 C 1.52995 * 109.47272 * 299.99922 * 26 9 8 28 28 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47268 * 299.99642 * 1 2 3 30 30 H 1.09005 * 109.46890 * 60.00168 * 1 2 3 31 31 H 1.08994 * 109.47384 * 270.00015 * 3 2 1 32 32 H 1.09004 * 109.46874 * 30.00448 * 3 2 1 33 33 H 1.09002 * 109.47004 * 149.99560 * 3 2 1 34 34 H 1.08994 * 109.47414 * 60.00415 * 6 4 2 35 35 H 1.08994 * 109.46855 * 59.99929 * 7 6 4 36 36 H 1.09000 * 109.46734 * 300.00510 * 7 6 4 37 37 H 1.09000 * 109.47382 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47290 * 59.99618 * 8 7 6 39 39 H 1.09003 * 109.47064 * 299.99568 * 9 8 7 40 40 H 1.08999 * 110.36633 * 85.25141 * 13 12 10 41 41 H 1.08996 * 110.37033 * 322.91522 * 13 12 10 42 42 H 1.09001 * 111.00522 * 204.91555 * 14 13 12 43 43 H 1.09000 * 110.99891 * 81.06585 * 14 13 12 44 44 H 0.96697 * 114.00297 * 298.54779 * 16 15 14 45 45 H 0.96994 * 120.00520 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.88350 * 59.56990 * 25 12 10 47 47 H 1.08998 * 109.88602 * 298.40656 * 25 12 10 48 48 H 1.09002 * 109.46609 * 60.00437 * 26 9 8 49 49 H 1.09000 * 109.46647 * 179.97438 * 26 9 8 50 50 H 1.09003 * 109.46894 * 300.00223 * 27 26 9 51 51 H 1.09000 * 109.47382 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0015 6 6 3.6459 -1.1671 -0.0011 7 6 4.1560 -2.6097 -0.0023 8 6 5.6859 -2.6097 -0.0022 9 6 6.1960 -1.8873 -1.2509 10 6 7.7030 -1.8878 -1.2512 11 8 8.3094 -2.4137 -0.3420 12 7 8.3769 -1.3039 -2.2618 13 6 7.7690 -0.6306 -3.4239 14 6 8.8503 -0.6972 -4.5312 15 6 10.1509 -0.4982 -3.7088 16 8 10.3917 0.8902 -3.4718 17 6 11.3258 -1.1329 -4.4074 18 1 11.8717 -1.9322 -3.9281 19 6 11.7037 -0.6933 -5.6584 20 7 11.0393 0.2802 -6.2419 21 14 13.1596 -1.4806 -6.5246 22 1 13.7325 -2.5448 -5.6618 23 1 12.7096 -2.0732 -7.8097 24 1 14.1942 -0.4491 -6.7905 25 6 9.8399 -1.2316 -2.3870 26 6 5.6859 -0.4448 -1.2497 27 6 4.1560 -0.4449 -1.2498 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3792 1.5835 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0096 -0.6536 0.8888 35 1 3.7923 -3.1228 -0.8924 36 1 3.7929 -3.1241 0.8875 37 1 6.0493 -3.6373 -0.0035 38 1 6.0493 -2.0965 0.8881 39 1 5.8327 -2.4005 -2.1413 40 1 7.5367 0.4067 -3.1826 41 1 6.8692 -1.1582 -3.7402 42 1 8.7186 0.1072 -5.2548 43 1 8.8449 -1.6692 -5.0245 44 1 10.5161 1.4110 -4.2770 45 1 11.3054 0.5897 -7.1217 46 1 10.2599 -2.2371 -2.4134 47 1 10.2569 -0.6754 -1.5474 48 1 6.0493 0.0682 -0.3593 49 1 6.0497 0.0698 -2.1391 50 1 3.7927 -0.9580 -2.1402 51 1 3.7926 0.5828 -1.2485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647303561.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:51 Heat of formation + Delta-G solvation = -148.846333 kcal Electronic energy + Delta-G solvation = -30847.941214 eV Core-core repulsion = 26745.835973 eV Total energy + Delta-G solvation = -4102.105241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75017 -40.97238 -39.24420 -38.02833 -36.61120 -36.10999 -34.20182 -32.86251 -31.89878 -31.14499 -29.97362 -28.81381 -27.57162 -26.87035 -24.95870 -23.68357 -23.44890 -21.66209 -21.19150 -20.20631 -20.06911 -19.14367 -18.01719 -17.91140 -17.26456 -16.99039 -16.90938 -16.66896 -16.42300 -16.04323 -15.77693 -15.13087 -14.87263 -14.84005 -14.77922 -14.42991 -14.00434 -13.88105 -13.67436 -13.55679 -13.37691 -13.33501 -13.25391 -13.14770 -13.10939 -12.97413 -12.70709 -12.62348 -12.45776 -12.39290 -12.26651 -12.24281 -11.99878 -11.95506 -11.43843 -11.24373 -11.06837 -10.87158 -10.66068 -10.51234 -10.12322 -9.64299 -9.58736 -8.24636 -6.38149 1.39397 1.44315 1.53677 1.59661 1.64316 2.04823 2.10438 2.39976 3.00910 3.35123 3.58951 3.67322 3.70629 3.89171 4.01607 4.10257 4.11600 4.20067 4.30590 4.33495 4.37397 4.42863 4.46890 4.51732 4.54205 4.56563 4.59743 4.68346 4.77163 4.83117 4.86953 4.93605 4.94457 4.96613 5.03572 5.14024 5.16969 5.19120 5.23124 5.27477 5.34847 5.44273 5.48978 5.54276 5.55742 5.77507 6.09610 6.34982 6.61477 6.68389 7.15856 7.17416 7.32130 7.42110 8.81268 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002425 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.199585 B =11542.286187 C =12106.335841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.621 5.621 3 C 0.064 3.936 4 C 0.514 3.486 5 O -0.587 6.587 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.090 4.090 9 C -0.094 4.094 10 C 0.520 3.480 11 O -0.594 6.594 12 N -0.609 5.609 13 C 0.105 3.895 14 C -0.128 4.128 15 C 0.236 3.764 16 O -0.591 6.591 17 C -0.562 4.562 18 H 0.047 0.953 19 C 0.040 3.960 20 N -0.902 5.902 21 Si 0.955 3.045 22 H -0.279 1.279 23 H -0.275 1.275 24 H -0.278 1.278 25 C 0.128 3.872 26 C -0.110 4.110 27 C -0.108 4.108 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.380 0.620 45 H 0.272 0.728 46 H 0.053 0.947 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.659 5.441 7.539 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.354 5.354 3 C -0.077 4.077 4 C 0.303 3.697 5 O -0.467 6.467 6 C -0.123 4.123 7 C -0.127 4.127 8 C -0.128 4.128 9 C -0.115 4.115 10 C 0.311 3.689 11 O -0.476 6.476 12 N -0.341 5.341 13 C -0.016 4.016 14 C -0.166 4.166 15 C 0.196 3.804 16 O -0.399 6.399 17 C -0.601 4.601 18 H 0.065 0.935 19 C -0.162 4.162 20 N -0.541 5.541 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.201 1.201 24 H -0.203 1.203 25 C 0.005 3.995 26 C -0.148 4.148 27 C -0.145 4.145 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.230 0.770 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.089 0.911 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.794 4.539 8.532 22.930 hybrid contribution 1.367 -0.488 -1.084 1.812 sum -19.427 4.051 7.448 21.196 Atomic orbital electron populations 1.21777 0.78863 1.03186 1.02932 1.47887 1.07712 1.06930 1.72836 1.22269 0.97936 0.84029 1.03471 1.21067 0.90820 0.83117 0.74665 1.90664 1.71218 1.32810 1.52005 1.21360 0.89850 0.98837 1.02239 1.21245 0.93497 0.95077 1.02853 1.21267 0.94784 1.00309 0.96445 1.21352 0.87898 1.00410 1.01831 1.21156 0.91291 0.76604 0.79838 1.90635 1.71737 1.47747 1.37462 1.48713 1.06989 1.55241 1.23174 1.22630 0.96886 0.97606 0.84505 1.23105 0.94919 1.01707 0.96905 1.19557 0.92547 0.79502 0.88755 1.86116 1.94735 1.21604 1.37485 1.21743 1.15744 1.19941 1.02642 0.93466 1.25530 0.98533 0.95057 0.97104 1.69738 1.40499 1.27494 1.16406 0.85554 0.79599 0.78433 0.78276 1.20362 1.20066 1.20334 1.21755 0.80822 0.98857 0.98097 1.21651 0.95919 0.93047 1.04156 1.21760 0.94117 1.02558 0.96101 0.91942 0.90484 0.90546 0.90520 0.89116 0.89640 0.86781 0.91812 0.91661 0.92366 0.91671 0.87349 0.90011 0.88397 0.89986 0.92797 0.77049 0.91887 0.92869 0.93950 0.91052 0.89532 0.91137 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.69 127.77 1.37 2.24 16 2 N -0.62 -8.45 3.27 -871.87 -2.85 -11.31 16 3 C 0.06 0.40 8.84 127.77 1.13 1.53 16 4 C 0.51 10.17 7.08 87.66 0.62 10.79 16 5 O -0.59 -16.70 15.31 -3.03 -0.05 -16.74 16 6 C -0.10 -1.66 1.72 -11.54 -0.02 -1.68 16 7 C -0.09 -1.83 4.49 30.60 0.14 -1.69 16 8 C -0.09 -2.14 4.49 30.59 0.14 -2.00 16 9 C -0.09 -2.28 1.87 -11.54 -0.02 -2.30 16 10 C 0.52 18.33 7.22 87.66 0.63 18.96 16 11 O -0.59 -25.69 16.31 -3.04 -0.05 -25.74 16 12 N -0.61 -22.62 3.32 -811.79 -2.70 -25.32 16 13 C 0.11 3.31 5.13 86.86 0.45 3.76 16 14 C -0.13 -5.18 5.47 31.99 0.17 -5.01 16 15 C 0.24 11.18 0.84 -10.35 -0.01 11.17 16 16 O -0.59 -28.73 13.07 -148.98 -1.95 -30.67 16 17 C -0.56 -29.51 8.22 25.60 0.21 -29.29 16 18 H 0.05 2.56 7.57 -2.91 -0.02 2.54 16 19 C 0.04 1.99 5.28 84.65 0.45 2.44 16 20 N -0.90 -44.71 10.69 21.45 0.23 -44.48 16 21 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.13 5.80 6.22 86.73 0.54 6.34 16 26 C -0.11 -1.98 5.01 30.59 0.15 -1.83 16 27 C -0.11 -1.45 4.84 30.59 0.15 -1.30 16 28 H 0.06 1.06 6.90 -2.39 -0.02 1.04 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 0.33 6.95 -2.39 -0.02 0.31 16 32 H 0.09 0.26 8.07 -2.38 -0.02 0.24 16 33 H 0.09 0.44 6.01 -2.39 -0.01 0.43 16 34 H 0.11 1.52 7.40 -2.39 -0.02 1.50 16 35 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 38 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.11 2.37 7.85 -2.39 -0.02 2.36 16 40 H 0.08 2.34 7.07 -2.39 -0.02 2.33 16 41 H 0.10 2.40 7.36 -2.39 -0.02 2.38 16 42 H 0.08 3.42 7.54 -2.39 -0.02 3.40 16 43 H 0.05 2.30 8.04 -2.39 -0.02 2.28 16 44 H 0.38 18.39 7.49 -74.06 -0.55 17.83 16 45 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 46 H 0.05 2.55 7.66 -2.39 -0.02 2.53 16 47 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.55 4.99 -2.39 -0.01 1.53 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.11 0.91 4.53 -2.39 -0.01 0.90 16 Total: -1.00 -68.43 387.02 1.14 -67.29 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.38 Total: 31.81 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.09 Total: 12.13 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -5.32 Total: -81.11 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -2.04 Total: -73.16 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -68.43 1.14 -67.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647303561.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.554 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds