Wall clock time and date at job start Tue Mar 31 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99657 * 2 1 4 4 O 1.20825 * 120.00249 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99890 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47250 * 174.36274 * 5 3 2 7 7 C 1.53002 * 110.01559 * 298.27599 * 6 5 3 8 8 N 1.46498 * 109.47113 * 297.60482 * 7 6 5 9 9 C 1.34779 * 119.99874 * 184.80581 * 8 7 6 10 10 O 1.21583 * 120.00124 * 355.59287 * 9 8 7 11 11 N 1.34779 * 120.00072 * 175.59879 * 9 8 7 12 12 C 1.46496 * 119.99926 * 184.56855 * 11 9 8 13 13 C 1.53002 * 109.47014 * 184.85461 * 12 11 9 14 14 C 1.50703 * 115.54954 * 65.87872 * 13 12 11 15 15 H 1.07998 * 120.00086 * 264.60174 * 14 13 12 16 16 C 1.37880 * 119.99720 * 84.60428 * 14 13 12 17 17 N 1.31510 * 120.00175 * 1.92678 * 16 14 13 18 18 Si 1.86804 * 119.99808 * 181.93458 * 16 14 13 19 19 H 1.48507 * 109.46976 * 59.99862 * 18 16 14 20 20 H 1.48503 * 109.46810 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47185 * 299.99683 * 18 16 14 22 22 C 1.52998 * 117.49925 * 280.21182 * 13 12 11 23 23 C 1.53000 * 117.50173 * 211.54789 * 13 12 11 24 24 C 1.54264 * 110.07302 * 59.69600 * 6 5 3 25 25 C 1.54892 * 104.19421 * 142.92080 * 24 6 5 26 26 C 1.54894 * 102.74506 * 322.05450 * 25 24 6 27 27 C 1.53878 * 110.03233 * 176.88939 * 6 5 3 28 28 H 1.08997 * 109.46854 * 60.00478 * 1 2 3 29 29 H 1.08995 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47077 * 300.00215 * 1 2 3 31 31 H 1.09003 * 109.46691 * 54.35938 * 5 3 2 32 32 H 1.09007 * 109.47036 * 294.36312 * 5 3 2 33 33 H 1.09005 * 109.46902 * 57.60151 * 7 6 5 34 34 H 1.08998 * 109.46978 * 177.60592 * 7 6 5 35 35 H 0.97004 * 120.00441 * 4.80386 * 8 7 6 36 36 H 0.97001 * 120.00111 * 4.56562 * 11 9 8 37 37 H 1.08999 * 109.47066 * 304.85253 * 12 11 9 38 38 H 1.08999 * 109.47073 * 64.85688 * 12 11 9 39 39 H 0.97004 * 120.00069 * 185.01844 * 17 16 14 40 40 H 1.08999 * 117.50019 * 359.97438 * 22 13 12 41 41 H 1.09000 * 117.49745 * 145.02229 * 22 13 12 42 42 H 1.08999 * 117.50353 * 214.97875 * 23 13 12 43 43 H 1.09000 * 117.49748 * 359.97438 * 23 13 12 44 44 H 1.08996 * 110.48635 * 24.23841 * 24 6 5 45 45 H 1.09001 * 110.48465 * 261.59664 * 24 6 5 46 46 H 1.09003 * 110.75291 * 203.74584 * 25 24 6 47 47 H 1.08997 * 110.75814 * 80.37050 * 25 24 6 48 48 H 1.09003 * 110.48344 * 156.62262 * 26 25 24 49 49 H 1.09001 * 110.48879 * 279.13273 * 26 25 24 50 50 H 1.08991 * 110.03546 * 121.37886 * 27 6 5 51 51 H 1.08999 * 110.02935 * 359.94651 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0005 2.7352 -0.1412 7 6 3.5031 3.3025 -1.4723 8 7 4.1121 2.5591 -2.5780 9 6 3.8951 2.9462 -3.8506 10 8 3.1306 3.8621 -4.0855 11 7 4.5253 2.3181 -4.8629 12 6 4.3677 2.8021 -6.2366 13 6 5.0816 1.8497 -7.1980 14 6 4.4984 0.4632 -7.2919 15 1 4.9078 -0.3365 -6.6926 16 6 3.4423 0.2159 -8.1431 17 7 2.9685 1.1807 -8.9008 18 14 2.6843 -1.4897 -8.2198 19 1 2.1598 -1.8590 -6.8804 20 1 1.5727 -1.4935 -9.2045 21 1 3.7173 -2.4723 -8.6350 22 6 6.5994 1.9882 -7.3325 23 6 5.6845 2.4501 -8.4696 24 6 3.4428 3.5696 1.0303 25 6 4.5727 4.5801 1.3486 26 6 5.8544 3.7329 1.1516 27 6 5.5339 2.8390 -0.0641 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9608 0.6958 -0.8344 32 1 3.9510 0.8708 0.9370 33 1 2.4185 3.2081 -1.5248 34 1 3.7804 4.3541 -1.5453 35 1 4.6716 1.7882 -2.3943 36 1 5.0832 1.5455 -4.6819 37 1 3.3078 2.8446 -6.4875 38 1 4.8018 3.7982 -6.3229 39 1 2.1805 1.0273 -9.4453 40 1 7.0893 2.7581 -6.7364 41 1 7.1760 1.0766 -7.4894 42 1 5.6597 1.8423 -9.3740 43 1 5.5722 3.5236 -8.6215 44 1 3.2464 2.9327 1.8927 45 1 2.5363 4.0938 0.7277 46 1 4.4971 4.9327 2.3773 47 1 4.5512 5.4164 0.6499 48 1 6.7078 4.3763 0.9375 49 1 6.0488 3.1241 2.0346 50 1 5.9236 3.2936 -0.9748 51 1 5.9685 1.8492 0.0753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650537456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:20 Heat of formation + Delta-G solvation = -127.365312 kcal Electronic energy + Delta-G solvation = -30662.295683 eV Core-core repulsion = 26561.121929 eV Total energy + Delta-G solvation = -4101.173755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.99125 -40.91304 -39.70001 -38.47748 -37.37450 -35.43870 -34.89691 -33.93638 -32.65371 -29.68339 -29.52533 -28.29975 -27.56677 -26.77010 -25.18812 -22.94383 -22.31569 -21.98419 -21.40217 -21.17318 -19.97300 -19.16245 -18.55667 -18.18323 -17.63298 -17.54467 -16.85686 -16.68421 -16.52596 -16.10326 -15.93885 -15.62571 -15.18305 -15.07589 -14.76438 -14.55085 -14.41093 -14.30787 -13.98637 -13.83208 -13.49185 -13.32739 -13.02690 -12.89227 -12.79003 -12.71180 -12.40476 -12.32063 -12.00463 -11.92810 -11.85333 -11.76730 -11.68486 -11.59053 -11.46272 -11.31427 -11.23526 -11.21472 -10.94582 -10.40495 -10.25841 -10.01236 -9.56336 -8.08619 -6.21551 1.21954 1.43114 1.43976 1.50503 1.76922 1.86280 2.24520 2.43413 3.20509 3.34082 3.43852 3.54545 3.61102 3.70258 3.97110 4.17319 4.25870 4.26870 4.27964 4.31875 4.33803 4.47724 4.58391 4.61109 4.65902 4.67549 4.68222 4.73428 4.74703 4.85115 4.90854 4.99173 5.02989 5.06155 5.10933 5.16045 5.27538 5.31085 5.32771 5.41956 5.50111 5.56453 5.57830 5.61515 5.65063 5.73871 5.79901 6.15909 6.38147 6.76318 6.85846 7.25616 7.47892 7.70069 8.99069 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011132 B = 0.003277 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.682742 B = 8541.779449 C =10201.994220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.452 3.548 4 O -0.527 6.527 5 C -0.103 4.103 6 C -0.051 4.051 7 C 0.149 3.851 8 N -0.729 5.729 9 C 0.694 3.306 10 O -0.650 6.650 11 N -0.713 5.713 12 C 0.199 3.801 13 C 0.004 3.996 14 C -0.500 4.500 15 H 0.065 0.935 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.948 3.052 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.266 1.266 22 C -0.172 4.172 23 C -0.157 4.157 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.117 4.117 27 C -0.115 4.115 28 H 0.046 0.954 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.021 0.979 38 H 0.033 0.967 39 H 0.257 0.743 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 -2.233 24.871 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.285 6.285 3 C 0.296 3.704 4 O -0.416 6.416 5 C -0.140 4.140 6 C -0.051 4.051 7 C 0.025 3.975 8 N -0.387 5.387 9 C 0.394 3.606 10 O -0.533 6.533 11 N -0.366 5.366 12 C 0.074 3.926 13 C 0.003 3.997 14 C -0.538 4.538 15 H 0.083 0.917 16 C -0.178 4.178 17 N -0.547 5.547 18 Si 0.774 3.226 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.209 4.209 23 C -0.195 4.195 24 C -0.140 4.140 25 C -0.166 4.166 26 C -0.154 4.154 27 C -0.153 4.153 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.165 0.835 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.246 0.754 36 H 0.243 0.757 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.082 0.918 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.741 -1.088 24.455 24.934 hybrid contribution -1.064 -1.002 -0.767 1.651 sum 3.677 -2.090 23.688 24.063 Atomic orbital electron populations 1.23438 0.75509 1.05322 1.02051 1.86498 1.24450 1.33560 1.83943 1.24426 0.93453 0.81009 0.71485 1.90663 1.68140 1.36898 1.45931 1.21794 0.85753 0.98349 1.08138 1.21274 0.97333 0.93084 0.93448 1.21356 0.96919 0.95022 0.84179 1.44922 1.55622 1.35063 1.03080 1.16240 0.80523 0.82135 0.81717 1.90851 1.42249 1.35548 1.84620 1.44855 1.51866 1.34230 1.05671 1.20394 0.98315 0.94336 0.79531 1.19037 0.90804 0.94754 0.95082 1.20654 1.16632 0.93515 1.23011 0.91712 1.25713 0.97778 0.99836 0.94511 1.70113 1.22931 1.34258 1.27390 0.85781 0.78080 0.81154 0.77600 1.19950 1.21935 1.19073 1.23004 0.93475 1.02010 1.02439 1.22402 1.05664 0.98015 0.93450 1.22354 0.97994 0.97498 0.96169 1.22561 0.94890 0.97566 1.01624 1.22333 0.97133 0.97884 0.98099 1.22300 0.91277 1.02280 0.99428 0.93507 0.85447 0.91362 0.86510 0.83488 0.93568 0.93133 0.75376 0.75679 0.96092 0.94907 0.93399 0.89065 0.89470 0.91819 0.91323 0.90311 0.92784 0.90397 0.92806 0.91333 0.89735 0.91783 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -7.82 10.57 -51.43 -0.54 -8.36 16 3 C 0.45 10.00 7.35 71.24 0.52 10.52 16 4 O -0.53 -14.94 12.00 21.97 0.26 -14.68 16 5 C -0.10 -1.47 4.38 29.85 0.13 -1.34 16 6 C -0.05 -0.86 0.36 -51.46 -0.02 -0.88 16 7 C 0.15 4.06 4.01 86.38 0.35 4.41 16 8 N -0.73 -20.37 4.77 -478.53 -2.28 -22.65 16 9 C 0.69 27.51 8.56 179.05 1.53 29.04 16 10 O -0.65 -32.65 16.33 -3.98 -0.06 -32.71 16 11 N -0.71 -27.75 5.47 -478.54 -2.62 -30.37 16 12 C 0.20 9.36 5.52 86.38 0.48 9.84 16 13 C 0.00 0.19 1.41 -52.93 -0.07 0.11 16 14 C -0.50 -25.61 8.74 25.60 0.22 -25.39 16 15 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 16 C 0.02 1.18 5.43 84.66 0.46 1.64 16 17 N -0.91 -52.47 12.73 21.45 0.27 -52.19 16 18 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 C -0.17 -6.70 9.96 30.62 0.30 -6.39 16 23 C -0.16 -7.19 9.23 30.62 0.28 -6.91 16 24 C -0.10 -1.77 4.49 31.67 0.14 -1.62 16 25 C -0.13 -1.85 6.91 31.89 0.22 -1.63 16 26 C -0.12 -1.28 6.83 31.67 0.22 -1.06 16 27 C -0.12 -1.42 5.56 31.32 0.17 -1.24 16 28 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.12 1.42 6.92 -2.39 -0.02 1.40 16 32 H 0.15 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 1.59 5.88 -2.38 -0.01 1.58 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 8.26 7.02 -92.71 -0.65 7.61 16 36 H 0.41 13.50 8.49 -92.71 -0.79 12.72 16 37 H 0.02 1.17 8.11 -2.39 -0.02 1.15 16 38 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 39 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.08 1.15 7.84 -2.39 -0.02 1.13 16 45 H 0.05 1.26 6.98 -2.39 -0.02 1.24 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 1.00 7.34 -2.39 -0.02 0.98 16 51 H 0.10 0.70 7.67 -2.39 -0.02 0.68 16 Total: -1.00 -74.35 408.30 2.69 -71.66 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.50 Total: 33.71 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.14 Total: 10.83 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.63 Total: -105.22 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.34 Total: -55.75 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.35 2.69 -71.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650537456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.704 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds