Wall clock time and date at job start Tue Mar 31 2020 22:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00134 * 2 1 4 4 O 1.20824 * 119.99594 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00392 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.67062 * 61.78229 * 5 3 2 7 7 C 1.54889 * 110.75509 * 298.55003 * 5 3 2 8 8 C 1.54266 * 104.19513 * 203.55404 * 7 5 3 9 9 C 1.53883 * 106.59962 * 23.60981 * 8 7 5 10 10 H 1.08994 * 110.03336 * 240.66500 * 9 8 7 11 11 C 1.50700 * 110.03274 * 119.28215 * 9 8 7 12 12 O 1.21280 * 119.99851 * 242.09877 * 11 9 8 13 13 N 1.34770 * 119.99880 * 62.09476 * 11 9 8 14 14 C 1.46502 * 119.99931 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.46991 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.50071 * 55.06501 * 15 14 13 17 17 C 1.53044 * 109.49420 * 175.16224 * 15 14 13 18 18 C 1.53356 * 109.60566 * 181.32711 * 17 15 14 19 19 C 1.53194 * 109.14692 * 298.70972 * 18 17 15 20 20 N 1.46921 * 108.89324 * 54.57836 * 19 18 17 21 21 C 1.36939 * 120.63521 * 126.34096 * 20 19 18 22 22 H 1.08002 * 119.99356 * 332.51129 * 21 20 19 23 23 C 1.38809 * 120.00756 * 152.50272 * 21 20 19 24 24 N 1.31614 * 120.00551 * 159.35346 * 23 21 20 25 25 Si 1.86806 * 119.99633 * 339.35467 * 23 21 20 26 26 H 1.48501 * 109.46946 * 92.89203 * 25 23 21 27 27 H 1.48496 * 109.46962 * 212.89673 * 25 23 21 28 28 H 1.48503 * 109.47163 * 332.89437 * 25 23 21 29 29 C 1.46932 * 118.74258 * 306.32182 * 20 19 18 30 30 C 1.54268 * 106.63569 * 359.97438 * 9 8 7 31 31 H 1.08997 * 109.47653 * 300.00439 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00090 * 1 2 3 33 33 H 1.08999 * 109.47299 * 179.97438 * 1 2 3 34 34 H 1.09000 * 110.48762 * 84.88279 * 7 5 3 35 35 H 1.09000 * 110.48809 * 322.23308 * 7 5 3 36 36 H 1.08997 * 110.03589 * 264.32512 * 8 7 5 37 37 H 1.08998 * 110.03538 * 142.89305 * 8 7 5 38 38 H 0.96995 * 120.00272 * 359.97438 * 13 11 9 39 39 H 1.09005 * 109.47253 * 59.99962 * 14 13 11 40 40 H 1.08999 * 109.47158 * 299.99746 * 14 13 11 41 41 H 1.09001 * 109.46303 * 301.33303 * 17 15 14 42 42 H 1.08999 * 109.46106 * 61.31203 * 17 15 14 43 43 H 1.09001 * 109.68264 * 178.74739 * 18 17 15 44 44 H 1.08995 * 109.47510 * 58.54582 * 18 17 15 45 45 H 1.08995 * 109.58766 * 294.72081 * 19 18 17 46 46 H 1.09001 * 109.58579 * 174.44019 * 19 18 17 47 47 H 0.96997 * 120.00686 * 180.02562 * 24 23 21 48 48 H 1.08990 * 109.58765 * 173.39649 * 29 20 19 49 49 H 1.09001 * 109.58517 * 293.67837 * 29 20 19 50 50 H 1.08995 * 110.49011 * 95.09383 * 30 9 8 51 51 H 1.09004 * 110.48229 * 217.73518 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9761 0.8134 -0.8978 7 6 4.1501 0.6127 1.2732 8 6 5.5334 1.2742 1.4432 9 6 5.4652 2.6287 0.7162 10 1 6.2038 2.6602 -0.0848 11 6 5.7134 3.7509 1.6910 12 8 4.8504 4.5781 1.8959 13 7 6.8942 3.8352 2.3351 14 6 7.1352 4.9258 3.2831 15 6 8.5418 4.7900 3.8698 16 1 9.2711 4.7499 3.0608 17 6 8.8392 5.9935 4.7673 18 6 10.2608 5.8766 5.3304 19 6 10.3635 4.6028 6.1752 20 7 9.9393 3.4561 5.3605 21 6 10.7505 2.3619 5.2197 22 1 11.8220 2.4703 5.3006 23 6 10.1958 1.1136 4.9731 24 7 10.9316 0.1594 4.4436 25 14 8.4049 0.7880 5.3930 26 1 7.5606 1.0554 4.2010 27 1 8.2432 -0.6291 5.8064 28 1 7.9873 1.6789 6.5053 29 6 8.6277 3.5054 4.6999 30 6 4.0434 2.7437 0.1288 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 4.2567 -0.4625 1.1291 35 1 3.5184 0.8222 2.1364 36 1 6.3045 0.6480 0.9945 37 1 5.7460 1.4286 2.5011 38 1 7.5842 3.1735 2.1715 39 1 6.3999 4.8781 4.0864 40 1 7.0480 5.8819 2.7670 41 1 8.7546 6.9108 4.1846 42 1 8.1245 6.0185 5.5898 43 1 10.4820 6.7443 5.9520 44 1 10.9744 5.8262 4.5080 45 1 9.7166 4.6901 7.0481 46 1 11.3949 4.4604 6.4976 47 1 10.5439 -0.7128 4.2709 48 1 8.5148 2.6401 4.0469 49 1 7.8392 3.5007 5.4524 50 1 3.3942 3.2977 0.8067 51 1 4.0726 3.2230 -0.8498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654362541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:15 Heat of formation + Delta-G solvation = -120.453396 kcal Electronic energy + Delta-G solvation = -30558.519458 eV Core-core repulsion = 26457.645427 eV Total energy + Delta-G solvation = -4100.874031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.96588 -39.96226 -38.29326 -37.31500 -36.46186 -34.83000 -33.12855 -31.42077 -30.71078 -30.09617 -29.02873 -27.81411 -25.74757 -25.32535 -23.17713 -22.53758 -21.75608 -20.93119 -20.33625 -19.76776 -19.23634 -18.08339 -17.24061 -16.89182 -16.78650 -16.42653 -15.93546 -15.79418 -15.48205 -14.70976 -14.28631 -14.20912 -13.99511 -13.84048 -13.66798 -13.33853 -13.26808 -13.24264 -12.87350 -12.55099 -12.51269 -12.30889 -12.14347 -11.82886 -11.67103 -11.48761 -11.44042 -11.42399 -11.10923 -11.02902 -10.90554 -10.82809 -10.63529 -10.56691 -10.52996 -10.16789 -9.97189 -9.73562 -9.63932 -9.49503 -8.89845 -8.67447 -7.03044 -6.01700 -3.37254 1.96822 2.42937 2.72746 3.19575 3.32070 3.42383 3.46141 4.10487 4.19537 4.44595 4.52199 4.78360 4.80025 4.82956 4.88014 4.94133 5.04052 5.13044 5.14396 5.18345 5.21847 5.22695 5.28584 5.31070 5.39737 5.40575 5.59133 5.64659 5.77062 5.80372 5.84263 5.95422 6.00077 6.01962 6.07477 6.10714 6.12081 6.19040 6.27359 6.31302 6.51425 6.52882 6.56844 6.65523 6.70628 6.93524 7.50874 7.63480 7.89978 8.26685 8.32696 8.88021 9.65311 10.04139 11.14161 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.003026 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.530493 B = 9249.959267 C =10609.336267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.502 6.502 5 C -0.089 4.089 6 H 0.118 0.882 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.115 4.115 10 H 0.105 0.895 11 C 0.518 3.482 12 O -0.544 6.544 13 N -0.724 5.724 14 C 0.125 3.875 15 C -0.119 4.119 16 H 0.080 0.920 17 C -0.101 4.101 18 C -0.134 4.134 19 C 0.146 3.854 20 N -0.606 5.606 21 C -0.258 4.258 22 H 0.086 0.914 23 C 0.023 3.977 24 N -0.907 5.907 25 Si 0.880 3.120 26 H -0.287 1.287 27 H -0.304 1.304 28 H -0.273 1.273 29 C 0.134 3.866 30 C -0.092 4.092 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.405 0.595 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.062 0.938 47 H 0.263 0.737 48 H 0.070 0.930 49 H 0.025 0.975 50 H 0.100 0.900 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 2.395 -9.273 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.389 6.389 5 C -0.108 4.108 6 H 0.135 0.865 7 C -0.146 4.146 8 C -0.160 4.160 9 C -0.136 4.136 10 H 0.124 0.876 11 C 0.304 3.696 12 O -0.421 6.421 13 N -0.376 5.376 14 C 0.001 3.999 15 C -0.139 4.139 16 H 0.098 0.902 17 C -0.139 4.139 18 C -0.174 4.174 19 C 0.020 3.980 20 N -0.329 5.329 21 C -0.387 4.387 22 H 0.103 0.897 23 C -0.176 4.176 24 N -0.550 5.550 25 Si 0.711 3.289 26 H -0.214 1.214 27 H -0.232 1.232 28 H -0.198 1.198 29 C 0.008 3.992 30 C -0.130 4.130 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.241 0.759 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.043 0.957 50 H 0.119 0.881 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.533 3.110 -9.132 17.443 hybrid contribution -0.852 -0.629 0.129 1.067 sum -15.385 2.481 -9.003 17.998 Atomic orbital electron populations 1.23267 0.76462 1.03663 1.02566 1.86522 1.23334 1.33535 1.84116 1.23670 0.91868 0.81272 0.72070 1.90687 1.67081 1.36355 1.44785 1.22104 0.86809 0.99762 1.02144 0.86453 1.22325 0.96159 1.00472 0.95680 1.22225 0.97661 0.94154 1.01913 1.21959 0.99534 0.94223 0.97928 0.87645 1.20455 0.81778 0.86154 0.81255 1.90678 1.44156 1.42123 1.65169 1.46106 1.16776 1.30703 1.44005 1.21448 0.97266 0.89476 0.91672 1.21965 0.94647 0.98238 0.99081 0.90175 1.21399 0.97628 0.96360 0.98547 1.22043 0.96312 0.98685 1.00311 1.20956 0.98764 0.86425 0.91863 1.44345 1.17304 1.17010 1.54244 1.18950 0.90503 0.84482 1.44719 0.89658 1.25279 0.97294 0.95511 0.99491 1.69833 1.36606 1.04432 1.44150 0.87016 0.86529 0.76352 0.79017 1.21442 1.23182 1.19822 1.21365 0.88190 0.95295 0.94347 1.22253 0.94582 0.93402 1.02787 0.91876 0.91946 0.88085 0.89654 0.90910 0.89710 0.90320 0.75939 0.91760 0.91694 0.92771 0.92360 0.92540 0.91940 0.96040 0.91944 0.92760 0.91164 0.95722 0.88132 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.69 10.55 -39.27 -0.41 -4.10 16 3 C 0.47 5.49 7.26 36.00 0.26 5.76 16 4 O -0.50 -7.37 15.55 -18.75 -0.29 -7.67 16 5 C -0.09 -0.88 3.39 -89.74 -0.30 -1.18 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.11 -1.10 6.25 -25.07 -0.16 -1.26 16 8 C -0.12 -1.36 6.38 -25.61 -0.16 -1.52 16 9 C -0.12 -1.32 3.30 -90.65 -0.30 -1.62 16 10 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.52 7.72 6.92 -10.99 -0.08 7.65 16 12 O -0.54 -9.90 15.41 5.56 0.09 -9.82 16 13 N -0.72 -10.67 5.20 -60.29 -0.31 -10.98 16 14 C 0.13 1.89 5.07 -4.04 -0.02 1.87 16 15 C -0.12 -1.93 2.38 -90.50 -0.22 -2.14 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.10 -1.48 5.17 -26.52 -0.14 -1.62 16 18 C -0.13 -2.08 6.11 -26.45 -0.16 -2.24 16 19 C 0.15 2.76 6.50 -3.71 -0.02 2.73 16 20 N -0.61 -13.72 2.77 -172.32 -0.48 -14.20 16 21 C -0.26 -6.92 10.03 -15.06 -0.15 -7.07 16 22 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 23 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 24 N -0.91 -26.56 13.97 55.49 0.78 -25.78 16 25 Si 0.88 21.33 24.35 -169.99 -4.14 17.19 16 26 H -0.29 -6.33 6.62 56.52 0.37 -5.96 16 27 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.27 -6.73 6.64 56.52 0.38 -6.35 16 29 C 0.13 2.72 3.29 -3.71 -0.01 2.71 16 30 C -0.09 -1.07 5.20 -25.03 -0.13 -1.20 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.06 7.61 -51.93 -0.39 0.67 16 38 H 0.41 5.76 7.68 -40.82 -0.31 5.45 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.07 1.52 3.71 -51.93 -0.19 1.32 16 49 H 0.02 0.52 7.07 -51.93 -0.37 0.16 16 50 H 0.10 1.50 6.29 -51.93 -0.33 1.17 16 51 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -33.17 396.14 -8.22 -41.38 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.80 Total: 5.27 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.61 Total: 2.73 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.02 Total: -50.96 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.62 Total: -21.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.17 -8.22 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654362541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.070 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds