Wall clock time and date at job start Tue Mar 31 2020 22:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00134 * 2 1 4 4 O 1.20824 * 119.99594 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00392 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.67062 * 61.78229 * 5 3 2 7 7 C 1.54889 * 110.75509 * 298.55003 * 5 3 2 8 8 C 1.54266 * 104.19513 * 203.55404 * 7 5 3 9 9 C 1.53883 * 106.59962 * 23.60981 * 8 7 5 10 10 H 1.08994 * 110.03336 * 240.66500 * 9 8 7 11 11 C 1.50700 * 110.03274 * 119.28215 * 9 8 7 12 12 O 1.21280 * 119.99851 * 242.09877 * 11 9 8 13 13 N 1.34770 * 119.99880 * 62.09476 * 11 9 8 14 14 C 1.46502 * 119.99931 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.46991 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.50071 * 55.06501 * 15 14 13 17 17 C 1.53044 * 109.49420 * 175.16224 * 15 14 13 18 18 C 1.53356 * 109.60566 * 181.32711 * 17 15 14 19 19 C 1.53194 * 109.14692 * 298.70972 * 18 17 15 20 20 N 1.46921 * 108.89324 * 54.57836 * 19 18 17 21 21 C 1.36939 * 120.63521 * 126.34096 * 20 19 18 22 22 H 1.08002 * 119.99356 * 332.51129 * 21 20 19 23 23 C 1.38809 * 120.00756 * 152.50272 * 21 20 19 24 24 N 1.31614 * 120.00551 * 159.35346 * 23 21 20 25 25 Si 1.86806 * 119.99633 * 339.35467 * 23 21 20 26 26 H 1.48501 * 109.46946 * 92.89203 * 25 23 21 27 27 H 1.48496 * 109.46962 * 212.89673 * 25 23 21 28 28 H 1.48503 * 109.47163 * 332.89437 * 25 23 21 29 29 C 1.46932 * 118.74258 * 306.32182 * 20 19 18 30 30 C 1.54268 * 106.63569 * 359.97438 * 9 8 7 31 31 H 1.08997 * 109.47653 * 300.00439 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00090 * 1 2 3 33 33 H 1.08999 * 109.47299 * 179.97438 * 1 2 3 34 34 H 1.09000 * 110.48762 * 84.88279 * 7 5 3 35 35 H 1.09000 * 110.48809 * 322.23308 * 7 5 3 36 36 H 1.08997 * 110.03589 * 264.32512 * 8 7 5 37 37 H 1.08998 * 110.03538 * 142.89305 * 8 7 5 38 38 H 0.96995 * 120.00272 * 359.97438 * 13 11 9 39 39 H 1.09005 * 109.47253 * 59.99962 * 14 13 11 40 40 H 1.08999 * 109.47158 * 299.99746 * 14 13 11 41 41 H 1.09001 * 109.46303 * 301.33303 * 17 15 14 42 42 H 1.08999 * 109.46106 * 61.31203 * 17 15 14 43 43 H 1.09001 * 109.68264 * 178.74739 * 18 17 15 44 44 H 1.08995 * 109.47510 * 58.54582 * 18 17 15 45 45 H 1.08995 * 109.58766 * 294.72081 * 19 18 17 46 46 H 1.09001 * 109.58579 * 174.44019 * 19 18 17 47 47 H 0.96997 * 120.00686 * 180.02562 * 24 23 21 48 48 H 1.08990 * 109.58765 * 173.39649 * 29 20 19 49 49 H 1.09001 * 109.58517 * 293.67837 * 29 20 19 50 50 H 1.08995 * 110.49011 * 95.09383 * 30 9 8 51 51 H 1.09004 * 110.48229 * 217.73518 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9761 0.8134 -0.8978 7 6 4.1501 0.6127 1.2732 8 6 5.5334 1.2742 1.4432 9 6 5.4652 2.6287 0.7162 10 1 6.2038 2.6602 -0.0848 11 6 5.7134 3.7509 1.6910 12 8 4.8504 4.5781 1.8959 13 7 6.8942 3.8352 2.3351 14 6 7.1352 4.9258 3.2831 15 6 8.5418 4.7900 3.8698 16 1 9.2711 4.7499 3.0608 17 6 8.8392 5.9935 4.7673 18 6 10.2608 5.8766 5.3304 19 6 10.3635 4.6028 6.1752 20 7 9.9393 3.4561 5.3605 21 6 10.7505 2.3619 5.2197 22 1 11.8220 2.4703 5.3006 23 6 10.1958 1.1136 4.9731 24 7 10.9316 0.1594 4.4436 25 14 8.4049 0.7880 5.3930 26 1 7.5606 1.0554 4.2010 27 1 8.2432 -0.6291 5.8064 28 1 7.9873 1.6789 6.5053 29 6 8.6277 3.5054 4.6999 30 6 4.0434 2.7437 0.1288 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 4.2567 -0.4625 1.1291 35 1 3.5184 0.8222 2.1364 36 1 6.3045 0.6480 0.9945 37 1 5.7460 1.4286 2.5011 38 1 7.5842 3.1735 2.1715 39 1 6.3999 4.8781 4.0864 40 1 7.0480 5.8819 2.7670 41 1 8.7546 6.9108 4.1846 42 1 8.1245 6.0185 5.5898 43 1 10.4820 6.7443 5.9520 44 1 10.9744 5.8262 4.5080 45 1 9.7166 4.6901 7.0481 46 1 11.3949 4.4604 6.4976 47 1 10.5439 -0.7128 4.2709 48 1 8.5148 2.6401 4.0469 49 1 7.8392 3.5007 5.4524 50 1 3.3942 3.2977 0.8067 51 1 4.0726 3.2230 -0.8498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654362541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:14 Heat of formation + Delta-G solvation = -141.847497 kcal Electronic energy + Delta-G solvation = -30559.447176 eV Core-core repulsion = 26457.645427 eV Total energy + Delta-G solvation = -4101.801749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87581 -41.06617 -39.68367 -38.29635 -37.38855 -36.23044 -34.82052 -32.95150 -32.25489 -31.12932 -29.89458 -28.53364 -27.22430 -26.92555 -24.36576 -23.81984 -22.87433 -22.27613 -21.27161 -20.99863 -20.43278 -19.04624 -18.79070 -18.14244 -17.67884 -17.38718 -17.31560 -16.97592 -16.65210 -16.16288 -15.71637 -15.39875 -15.27177 -14.98451 -14.82441 -14.69775 -14.55076 -14.46711 -14.12515 -13.92315 -13.63083 -13.35920 -13.31996 -13.15773 -13.04075 -12.73597 -12.55042 -12.36337 -12.21929 -12.17640 -12.06363 -11.94798 -11.84025 -11.78971 -11.69260 -11.58520 -11.46261 -11.34172 -11.25716 -10.79148 -10.62025 -10.11937 -8.90774 -8.14213 -5.45842 1.08610 1.26593 1.43378 1.50262 1.58034 1.66738 2.22043 2.40861 3.06051 3.24298 3.33744 3.34502 3.65269 3.84009 3.92580 3.97140 4.04576 4.06758 4.21961 4.26150 4.27370 4.28680 4.30526 4.37749 4.43852 4.46819 4.49430 4.54898 4.61440 4.67909 4.72812 4.78717 4.84671 4.88652 4.98031 4.99076 5.09661 5.11460 5.17973 5.18499 5.23115 5.25001 5.30209 5.33095 5.45788 5.58794 5.89354 6.15535 6.47641 6.65607 6.93966 7.17260 7.64301 8.05796 9.05658 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.003026 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.530493 B = 9249.959267 C =10609.336267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.540 6.540 5 C -0.081 4.081 6 H 0.154 0.846 7 C -0.106 4.106 8 C -0.121 4.121 9 C -0.108 4.108 10 H 0.137 0.863 11 C 0.514 3.486 12 O -0.581 6.581 13 N -0.724 5.724 14 C 0.131 3.869 15 C -0.105 4.105 16 H 0.077 0.923 17 C -0.100 4.100 18 C -0.124 4.124 19 C 0.137 3.863 20 N -0.620 5.620 21 C -0.250 4.250 22 H 0.052 0.948 23 C -0.026 4.026 24 N -0.952 5.952 25 Si 0.937 3.063 26 H -0.255 1.255 27 H -0.314 1.314 28 H -0.280 1.280 29 C 0.132 3.868 30 C -0.092 4.092 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.409 0.591 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.263 0.737 48 H 0.056 0.944 49 H 0.019 0.981 50 H 0.063 0.937 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 2.818 -10.486 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.100 4.100 6 H 0.171 0.829 7 C -0.144 4.144 8 C -0.159 4.159 9 C -0.129 4.129 10 H 0.155 0.845 11 C 0.302 3.698 12 O -0.461 6.461 13 N -0.375 5.375 14 C 0.007 3.993 15 C -0.125 4.125 16 H 0.095 0.905 17 C -0.138 4.138 18 C -0.163 4.163 19 C 0.012 3.988 20 N -0.344 5.344 21 C -0.379 4.379 22 H 0.070 0.930 23 C -0.221 4.221 24 N -0.598 5.598 25 Si 0.767 3.233 26 H -0.181 1.181 27 H -0.243 1.243 28 H -0.205 1.205 29 C 0.007 3.993 30 C -0.130 4.130 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.244 0.756 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.573 3.553 -10.346 19.031 hybrid contribution -0.490 -0.721 0.576 1.045 sum -16.063 2.832 -9.770 19.013 Atomic orbital electron populations 1.23543 0.75072 1.05715 1.02343 1.86514 1.24763 1.32655 1.83576 1.24047 0.92601 0.81094 0.70960 1.90676 1.68014 1.37606 1.46693 1.22155 0.85663 0.98645 1.03501 0.82896 1.22321 0.95198 1.01730 0.95130 1.22247 0.98879 0.94314 1.00434 1.22022 1.00206 0.92883 0.97815 0.84485 1.21067 0.81056 0.86438 0.81261 1.90665 1.45205 1.43804 1.66472 1.46154 1.16941 1.30638 1.43783 1.21362 0.96027 0.90275 0.91653 1.21780 0.95305 0.96853 0.98565 0.90486 1.21435 0.96986 0.96638 0.98735 1.21940 0.96813 0.97637 0.99898 1.21170 0.98296 0.86865 0.92469 1.44486 1.17626 1.16848 1.55476 1.18874 0.89760 0.86061 1.43246 0.93031 1.25790 1.01019 0.95347 0.99971 1.69946 1.38577 1.04981 1.46253 0.86080 0.82667 0.75069 0.79515 1.18101 1.24330 1.20548 1.21369 0.86650 0.97038 0.94286 1.22177 0.93992 0.94395 1.02422 0.92577 0.91788 0.84909 0.87443 0.92681 0.87507 0.92843 0.75550 0.92644 0.90432 0.89833 0.91856 0.89369 0.92680 0.95326 0.92871 0.92807 0.92613 0.96268 0.91875 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.77 10.55 -51.47 -0.54 -7.32 16 3 C 0.47 10.47 7.26 71.23 0.52 10.98 16 4 O -0.54 -15.91 15.55 21.97 0.34 -15.57 16 5 C -0.08 -1.42 3.39 -10.23 -0.03 -1.45 16 6 H 0.15 1.62 8.14 -2.38 -0.02 1.60 16 7 C -0.11 -1.92 6.25 31.67 0.20 -1.72 16 8 C -0.12 -2.42 6.38 31.32 0.20 -2.22 16 9 C -0.11 -2.25 3.30 -10.81 -0.04 -2.28 16 10 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 11 C 0.51 14.74 6.92 87.66 0.61 15.35 16 12 O -0.58 -21.05 15.41 -3.03 -0.05 -21.09 16 13 N -0.72 -20.18 5.20 -463.06 -2.41 -22.58 16 14 C 0.13 3.71 5.07 86.38 0.44 4.15 16 15 C -0.10 -3.18 2.38 -10.71 -0.03 -3.21 16 16 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.10 -2.61 5.17 30.73 0.16 -2.45 16 18 C -0.12 -3.50 6.11 30.78 0.19 -3.32 16 19 C 0.14 5.04 6.50 86.36 0.56 5.60 16 20 N -0.62 -27.87 2.77 -699.11 -1.94 -29.81 16 21 C -0.25 -13.64 10.03 84.03 0.84 -12.79 16 22 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 23 C -0.03 -1.45 5.23 84.86 0.44 -1.01 16 24 N -0.95 -56.87 13.97 21.65 0.30 -56.57 16 25 Si 0.94 44.34 24.35 68.60 1.67 46.01 16 26 H -0.26 -10.63 6.62 99.48 0.66 -9.97 16 27 H -0.31 -15.33 7.11 99.48 0.71 -14.63 16 28 H -0.28 -13.42 6.64 99.48 0.66 -12.76 16 29 C 0.13 5.19 3.29 86.36 0.28 5.47 16 30 C -0.09 -2.01 5.20 31.69 0.16 -1.85 16 31 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 32 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.18 8.04 -2.39 -0.02 1.16 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.35 7.61 -2.39 -0.02 1.33 16 38 H 0.41 10.89 7.68 -92.71 -0.71 10.18 16 39 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 47 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.06 2.34 3.71 -2.39 -0.01 2.33 16 49 H 0.02 0.79 7.07 -2.39 -0.02 0.77 16 50 H 0.06 1.90 6.29 -2.39 -0.02 1.89 16 51 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -74.75 396.14 3.20 -71.55 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.11 Total: 24.55 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.71 Total: 10.81 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.04 Total: -108.96 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.25 Total: -43.97 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.01 kcal Total: -74.75 3.20 -71.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654362541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.294 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds