Wall clock time and date at job start Tue Mar 31 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00204 * 2 1 4 4 O 1.20826 * 119.99625 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00300 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.54373 * 57.38835 * 5 3 2 7 7 C 1.54269 * 110.48836 * 294.77548 * 5 3 2 8 8 C 1.53877 * 106.59918 * 217.71530 * 7 5 3 9 9 C 1.54263 * 106.59779 * 359.97438 * 8 7 5 10 10 H 1.08998 * 110.60064 * 264.87515 * 9 8 7 11 11 C 1.50702 * 110.48294 * 142.29215 * 9 8 7 12 12 O 1.21286 * 119.99841 * 245.22231 * 11 9 8 13 13 N 1.34773 * 120.00370 * 65.22392 * 11 9 8 14 14 C 1.46499 * 120.00509 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.47488 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.49867 * 305.07178 * 15 14 13 17 17 C 1.53035 * 109.49890 * 185.00161 * 15 14 13 18 18 C 1.53043 * 109.53665 * 178.68297 * 17 15 14 19 19 C 1.53196 * 109.31318 * 61.37032 * 18 17 15 20 20 N 1.46922 * 108.88838 * 305.29377 * 19 18 17 21 21 C 1.36945 * 120.62848 * 233.67928 * 20 19 18 22 22 H 1.07999 * 120.00157 * 152.59545 * 21 20 19 23 23 C 1.38807 * 119.99756 * 332.59583 * 21 20 19 24 24 N 1.31622 * 120.00269 * 159.34768 * 23 21 20 25 25 Si 1.86806 * 120.00102 * 339.34630 * 23 21 20 26 26 H 1.48494 * 109.47076 * 92.96261 * 25 23 21 27 27 H 1.48500 * 109.46865 * 212.95938 * 25 23 21 28 28 H 1.48497 * 109.47109 * 332.95955 * 25 23 21 29 29 C 1.47204 * 118.56120 * 53.53831 * 20 19 18 30 30 C 1.54890 * 104.19779 * 23.61235 * 9 8 7 31 31 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47222 * 299.99819 * 1 2 3 33 33 H 1.08998 * 109.47394 * 60.00286 * 1 2 3 34 34 H 1.09005 * 110.02875 * 336.99357 * 7 5 3 35 35 H 1.08990 * 110.03261 * 98.37810 * 7 5 3 36 36 H 1.09001 * 110.02597 * 240.71372 * 8 7 5 37 37 H 1.08997 * 110.03314 * 119.28177 * 8 7 5 38 38 H 0.97005 * 120.00006 * 0.02562 * 13 11 9 39 39 H 1.09005 * 109.46778 * 60.00109 * 14 13 11 40 40 H 1.08995 * 109.47109 * 300.00579 * 14 13 11 41 41 H 1.09003 * 109.46085 * 58.66959 * 17 15 14 42 42 H 1.08996 * 109.46024 * 298.70722 * 17 15 14 43 43 H 1.08992 * 109.50251 * 301.41412 * 18 17 15 44 44 H 1.09005 * 109.52118 * 181.33185 * 18 17 15 45 45 H 1.08997 * 109.58552 * 65.14377 * 19 18 17 46 46 H 1.08990 * 109.58871 * 185.43060 * 19 18 17 47 47 H 0.96991 * 120.00110 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.53802 * 186.67718 * 29 20 19 49 49 H 1.09001 * 109.67896 * 66.36810 * 29 20 19 50 50 H 1.08999 * 110.75434 * 80.37254 * 30 9 8 51 51 H 1.09000 * 110.75391 * 203.73875 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9767 0.7458 -0.8606 7 6 4.1377 0.6981 1.3112 8 6 5.3399 1.5798 1.6921 9 6 5.4575 2.6611 0.5982 10 1 6.1738 2.3579 -0.1654 11 6 5.8605 3.9814 1.2029 12 8 5.0957 4.9221 1.1698 13 7 7.0707 4.1168 1.7803 14 6 7.4626 5.4003 2.3677 15 6 8.8717 5.2846 2.9525 16 1 8.9057 4.4545 3.6581 17 6 9.2332 6.5843 3.6750 18 6 10.6296 6.4575 4.2884 19 6 11.6535 6.2234 3.1732 20 7 11.2369 5.0576 2.3821 21 6 12.0969 4.0125 2.1736 22 1 11.7085 3.0191 2.0042 23 6 13.4678 4.2299 2.1802 24 7 14.2925 3.2254 2.3885 25 14 14.1424 5.9481 1.8933 26 1 14.3428 6.6256 3.1993 27 1 15.4409 5.8570 1.1785 28 1 13.1799 6.7273 1.0738 29 6 9.8756 5.0371 1.8222 30 6 4.0321 2.7518 -0.0011 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.3826 0.7371 2.0963 35 1 4.4624 -0.3307 1.1564 36 1 6.2489 0.9789 1.7219 37 1 5.1683 2.0465 2.6620 38 1 7.6825 3.3645 1.8064 39 1 6.7620 5.6668 3.1591 40 1 7.4508 6.1712 1.5972 41 1 8.5060 6.7755 4.4642 42 1 9.2226 7.4102 2.9638 43 1 10.6476 5.6164 4.9813 44 1 10.8772 7.3747 4.8230 45 1 11.7015 7.1027 2.5308 46 1 12.6341 6.0366 3.6108 47 1 15.2504 3.3774 2.3934 48 1 9.6827 4.0650 1.3685 49 1 9.7770 5.8182 1.0683 50 1 3.3855 3.3607 0.6307 51 1 4.0644 3.1466 -1.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654362542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:17 Heat of formation + Delta-G solvation = -142.978517 kcal Electronic energy + Delta-G solvation = -29711.904102 eV Core-core repulsion = 25610.053308 eV Total energy + Delta-G solvation = -4101.850794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83050 -40.97133 -39.63331 -38.29298 -37.34724 -36.29035 -34.69234 -32.85283 -32.30581 -31.08796 -29.84875 -28.50575 -27.35697 -26.81963 -24.09533 -23.64691 -23.03643 -22.38589 -21.13448 -20.98293 -20.49080 -18.95551 -18.66283 -18.14200 -17.64885 -17.32266 -17.19544 -16.78175 -16.70071 -16.33559 -15.61956 -15.38566 -15.18811 -15.06501 -14.82465 -14.59940 -14.46969 -14.20312 -14.14307 -13.97766 -13.61783 -13.29145 -13.20843 -13.16589 -13.13333 -12.81704 -12.55349 -12.25253 -12.21912 -12.12506 -12.07842 -11.93250 -11.79620 -11.70038 -11.67273 -11.58309 -11.36752 -11.27786 -11.23840 -10.73670 -10.63822 -10.03678 -8.90515 -8.14343 -5.44788 1.12092 1.30409 1.42175 1.50196 1.66209 1.70175 2.29059 2.43165 3.07269 3.28734 3.33576 3.40976 3.72296 3.87661 3.97515 4.02546 4.08197 4.17120 4.25649 4.29337 4.29674 4.31340 4.32000 4.41221 4.45899 4.48521 4.55593 4.62295 4.66581 4.71268 4.80241 4.83843 4.86297 4.89154 5.00963 5.07775 5.09064 5.17237 5.18875 5.25589 5.27623 5.28827 5.30352 5.37869 5.50100 5.59827 5.89085 6.15328 6.58981 6.68850 6.93662 7.27842 7.64855 8.06829 9.05071 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.002083 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.984412 B =13439.443056 C =14177.556567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.542 6.542 5 C -0.083 4.083 6 H 0.147 0.853 7 C -0.103 4.103 8 C -0.111 4.111 9 C -0.109 4.109 10 H 0.134 0.866 11 C 0.516 3.484 12 O -0.587 6.587 13 N -0.717 5.717 14 C 0.136 3.864 15 C -0.102 4.102 16 H 0.076 0.924 17 C -0.100 4.100 18 C -0.126 4.126 19 C 0.115 3.885 20 N -0.619 5.619 21 C -0.241 4.241 22 H 0.061 0.939 23 C -0.035 4.035 24 N -0.955 5.955 25 Si 0.941 3.059 26 H -0.278 1.278 27 H -0.314 1.314 28 H -0.266 1.266 29 C 0.152 3.848 30 C -0.090 4.090 31 H 0.133 0.867 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.028 0.972 46 H 0.046 0.954 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.026 0.974 50 H 0.060 0.940 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.759 -5.973 -2.098 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.432 6.432 5 C -0.102 4.102 6 H 0.164 0.836 7 C -0.140 4.140 8 C -0.148 4.148 9 C -0.130 4.130 10 H 0.152 0.848 11 C 0.304 3.696 12 O -0.468 6.468 13 N -0.369 5.369 14 C 0.012 3.988 15 C -0.122 4.122 16 H 0.094 0.906 17 C -0.138 4.138 18 C -0.165 4.165 19 C -0.010 4.010 20 N -0.344 5.344 21 C -0.371 4.371 22 H 0.079 0.921 23 C -0.230 4.230 24 N -0.601 5.601 25 Si 0.771 3.229 26 H -0.205 1.205 27 H -0.243 1.243 28 H -0.190 1.190 29 C 0.027 3.973 30 C -0.128 4.128 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.044 0.956 50 H 0.079 0.921 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.375 -5.071 -2.109 24.986 hybrid contribution 0.858 0.657 -0.195 1.098 sum -23.517 -4.413 -2.304 24.038 Atomic orbital electron populations 1.23537 0.75141 1.05714 1.02289 1.86513 1.24689 1.32674 1.83597 1.24155 0.92780 0.81043 0.70908 1.90685 1.68077 1.37702 1.46742 1.22044 0.85568 0.98822 1.03788 0.83553 1.22078 0.96921 1.01123 0.93914 1.22152 1.00265 0.95484 0.96946 1.22221 0.98847 0.91906 1.00056 0.84803 1.21003 0.80851 0.90475 0.77268 1.90691 1.52924 1.43099 1.60049 1.46050 1.17224 1.15044 1.58555 1.21252 0.94589 0.85543 0.97465 1.21713 0.92686 0.99621 0.98212 0.90583 1.21369 0.96205 0.96353 0.99837 1.21899 0.95460 1.01720 0.97459 1.21425 0.97438 0.89196 0.92944 1.44542 1.11965 1.19171 1.58681 1.18891 0.87332 0.88144 1.42694 0.92119 1.25842 0.96557 0.99822 1.00774 1.69946 1.02942 1.33027 1.54215 0.85995 0.76509 0.82396 0.77957 1.20459 1.24303 1.19041 1.21154 0.82893 0.99749 0.93515 1.22232 0.94434 0.94115 1.02018 0.84866 0.92383 0.92142 0.91982 0.87198 0.87599 0.92005 0.75047 0.91407 0.92292 0.90003 0.91751 0.92517 0.90199 0.95445 0.93609 0.93110 0.91904 0.95633 0.92115 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.66 10.56 -51.42 -0.54 -6.21 16 3 C 0.47 9.01 7.11 71.23 0.51 9.52 16 4 O -0.54 -14.69 15.47 21.97 0.34 -14.35 16 5 C -0.08 -1.15 3.36 -10.47 -0.04 -1.19 16 6 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 7 C -0.10 -1.13 6.36 31.32 0.20 -0.93 16 8 C -0.11 -1.37 6.35 31.32 0.20 -1.17 16 9 C -0.11 -1.78 3.25 -10.47 -0.03 -1.82 16 10 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 11 C 0.52 12.50 6.99 87.66 0.61 13.11 16 12 O -0.59 -19.53 15.72 -3.05 -0.05 -19.58 16 13 N -0.72 -15.80 5.32 -463.07 -2.46 -18.27 16 14 C 0.14 3.31 5.07 86.38 0.44 3.75 16 15 C -0.10 -2.76 2.38 -10.72 -0.03 -2.78 16 16 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 18 C -0.13 -3.92 6.08 30.67 0.19 -3.74 16 19 C 0.11 4.66 4.20 86.36 0.36 5.03 16 20 N -0.62 -27.38 2.78 -698.39 -1.94 -29.32 16 21 C -0.24 -12.98 10.05 84.03 0.84 -12.13 16 22 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 23 C -0.04 -2.01 5.23 84.86 0.44 -1.56 16 24 N -0.95 -58.52 13.97 21.65 0.30 -58.21 16 25 Si 0.94 46.04 24.35 68.60 1.67 47.71 16 26 H -0.28 -12.91 6.62 99.48 0.66 -12.25 16 27 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 28 H -0.27 -12.55 6.64 99.48 0.66 -11.89 16 29 C 0.15 5.24 5.61 86.31 0.48 5.72 16 30 C -0.09 -1.74 4.98 31.88 0.16 -1.58 16 31 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 33 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 34 H 0.06 0.81 7.83 -2.38 -0.02 0.79 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.94 7.83 -2.39 -0.02 0.92 16 38 H 0.41 7.73 7.70 -92.70 -0.71 7.02 16 39 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.03 1.10 7.08 -2.39 -0.02 1.08 16 46 H 0.05 2.09 4.49 -2.39 -0.01 2.08 16 47 H 0.26 15.26 8.31 -92.72 -0.77 14.49 16 48 H 0.06 2.10 7.15 -2.39 -0.02 2.08 16 49 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.06 1.64 6.78 -2.39 -0.02 1.63 16 51 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -76.66 396.77 3.12 -73.54 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.11 Total: 15.40 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.70 Total: 9.30 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -4.10 Total: -105.80 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.25 Total: -40.14 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.67 Total: 47.71 kcal Total: -76.66 3.12 -73.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654362542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.443 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds