Wall clock time and date at job start Tue Mar 31 2020 22:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86796 * 120.00390 * 2 1 4 4 H 1.48501 * 109.47289 * 271.97610 * 3 2 1 5 5 H 1.48503 * 109.46836 * 31.97251 * 3 2 1 6 6 H 1.48503 * 109.47099 * 151.97467 * 3 2 1 7 7 C 1.38813 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 339.43940 * 7 2 1 9 9 N 1.36939 * 120.00164 * 159.44386 * 7 2 1 10 10 C 1.47077 * 120.88016 * 333.51092 * 9 7 2 11 11 C 1.53240 * 108.52155 * 231.16117 * 10 9 7 12 12 N 1.46901 * 109.33993 * 306.16962 * 11 10 9 13 13 C 1.46899 * 111.00000 * 187.25486 * 12 11 10 14 14 C 1.52991 * 109.47177 * 170.00288 * 13 12 11 15 15 C 1.53005 * 109.47127 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.46964 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99799 * 179.97438 * 16 15 14 18 18 O 1.21348 * 120.00068 * 359.97438 * 17 16 15 19 19 C 1.49447 * 120.00058 * 180.02562 * 17 16 15 20 20 O 1.21355 * 119.99999 * 0.02562 * 19 17 16 21 21 N 1.34775 * 120.00058 * 179.97438 * 19 17 16 22 22 C 1.46506 * 119.99907 * 180.02562 * 21 19 17 23 23 C 1.52996 * 109.46877 * 179.97438 * 22 21 19 24 24 C 1.53004 * 117.49808 * 243.61583 * 23 22 21 25 25 C 1.53003 * 60.00159 * 252.51424 * 24 23 22 26 26 C 1.46899 * 111.26797 * 63.10526 * 12 11 10 27 27 C 1.47083 * 120.88272 * 153.48777 * 9 7 2 28 28 H 0.97003 * 120.00107 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.63033 * 111.44843 * 10 9 7 30 30 H 1.09005 * 109.78963 * 350.96745 * 10 9 7 31 31 H 1.08995 * 109.49145 * 186.20865 * 11 10 9 32 32 H 1.08999 * 109.49287 * 66.12962 * 11 10 9 33 33 H 1.09002 * 109.47263 * 49.99788 * 13 12 11 34 34 H 1.09009 * 109.46720 * 290.00033 * 13 12 11 35 35 H 1.09002 * 109.47432 * 59.99604 * 14 13 12 36 36 H 1.09009 * 109.47087 * 299.99520 * 14 13 12 37 37 H 1.08994 * 109.47121 * 59.99877 * 15 14 13 38 38 H 1.08995 * 109.47110 * 299.99258 * 15 14 13 39 39 H 0.97002 * 120.00145 * 0.27548 * 16 15 14 40 40 H 0.96994 * 120.00238 * 359.97438 * 21 19 17 41 41 H 1.08995 * 109.46546 * 299.99564 * 22 21 19 42 42 H 1.08994 * 109.47249 * 59.99916 * 22 21 19 43 43 H 1.08997 * 115.55327 * 29.32657 * 23 22 21 44 44 H 1.09002 * 117.49690 * 0.02562 * 24 23 22 45 45 H 1.08999 * 117.49740 * 145.02467 * 24 23 22 46 46 H 1.09001 * 117.49618 * 252.51219 * 25 24 23 47 47 H 1.08993 * 117.49803 * 107.49317 * 25 24 23 48 48 H 1.09004 * 109.49289 * 56.85359 * 26 12 11 49 49 H 1.08996 * 109.49291 * 176.93526 * 26 12 11 50 50 H 1.09007 * 109.62529 * 248.54820 * 27 9 7 51 51 H 1.08999 * 109.62754 * 9.12612 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4559 2.0705 -1.3992 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4283 0.6579 7 6 2.0101 -1.2022 0.0005 8 1 1.5217 -2.1076 0.3294 9 7 3.3141 -1.2402 -0.4158 10 6 3.8307 -0.2486 -1.3713 11 6 4.5271 -0.9923 -2.5159 12 7 5.5362 -1.9042 -1.9608 13 6 6.3439 -2.5086 -3.0286 14 6 7.5324 -3.2490 -2.4122 15 6 8.3733 -3.8790 -3.5243 16 7 9.5117 -4.5875 -2.9340 17 6 10.3948 -5.2240 -3.7287 18 8 10.2467 -5.2108 -4.9330 19 6 11.5557 -5.9472 -3.1265 20 8 11.7031 -5.9617 -1.9221 21 7 12.4385 -6.5842 -3.9211 22 6 13.5763 -7.2936 -3.3308 23 6 14.4162 -7.9250 -4.4428 24 6 14.5155 -9.4516 -4.4731 25 6 15.7204 -8.6151 -4.0379 26 6 4.9159 -2.9375 -1.1208 27 6 4.2354 -2.2735 0.0810 28 1 -0.4850 0.8401 -0.0004 29 1 4.5453 0.4047 -0.8707 30 1 3.0073 0.3454 -1.7681 31 1 5.0112 -0.2725 -3.1759 32 1 3.7903 -1.5647 -3.0793 33 1 6.7087 -1.7269 -3.6950 34 1 5.7315 -3.2113 -3.5938 35 1 7.1676 -4.0306 -1.7458 36 1 8.1447 -2.5462 -1.8470 37 1 8.7380 -3.0977 -4.1910 38 1 7.7608 -4.5818 -4.0891 39 1 9.6274 -4.6021 -1.9711 40 1 12.3202 -6.5736 -4.8838 41 1 14.1893 -6.5909 -2.7664 42 1 13.2112 -8.0745 -2.6638 43 1 14.3992 -7.4025 -5.3992 44 1 13.9821 -10.0059 -3.7009 45 1 14.5637 -9.9335 -5.4495 46 1 16.5613 -8.5468 -4.7281 47 1 15.9800 -8.6192 -2.9793 48 1 4.1736 -3.4828 -1.7037 49 1 5.6820 -3.6284 -0.7690 50 1 4.9890 -1.8149 0.7213 51 1 3.6775 -3.0210 0.6449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660905404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:47 Heat of formation + Delta-G solvation = -36.703589 kcal Electronic energy + Delta-G solvation = -28335.479119 eV Core-core repulsion = 24270.529503 eV Total energy + Delta-G solvation = -4064.949616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74559 -40.04872 -39.71800 -38.45442 -37.28444 -36.11307 -35.19073 -33.83020 -32.40503 -31.87249 -29.22300 -28.52232 -26.34652 -25.15740 -24.37828 -23.58344 -23.23582 -22.38588 -22.08887 -21.24869 -20.91615 -19.45965 -18.81403 -18.08903 -17.40727 -17.31579 -17.06099 -16.64688 -16.53030 -16.04690 -15.86671 -15.84146 -15.54805 -15.42920 -15.27123 -14.95545 -14.68503 -14.65984 -14.38629 -14.08477 -13.98215 -13.59910 -13.15426 -13.00612 -12.85614 -12.70095 -12.50917 -12.44656 -12.37408 -12.26554 -12.17632 -11.89568 -11.62110 -11.58397 -11.43185 -11.36910 -11.21572 -10.77054 -10.69761 -10.34361 -10.24618 -9.35420 -8.89251 -8.17328 -5.48684 0.29004 1.25373 1.29832 1.42176 1.51958 2.08879 2.41469 2.51640 2.85689 2.93123 3.07791 3.36666 3.40255 3.62949 3.91752 3.96342 4.00054 4.06601 4.13770 4.22174 4.23390 4.24925 4.40769 4.50748 4.56627 4.57782 4.60750 4.62799 4.65446 4.72904 4.79164 4.81481 4.84664 4.98314 5.02016 5.02890 5.04864 5.09614 5.17210 5.25964 5.27399 5.29926 5.31613 5.82389 5.86706 6.08550 6.11780 6.24050 6.29571 6.67617 6.88988 6.89712 7.60946 8.03443 9.02633 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.039441 B = 0.001473 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.750948 B =18999.158752 C =19167.471055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.035 4.035 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.310 1.310 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.053 3.947 12 N -0.538 5.538 13 C 0.059 3.941 14 C -0.117 4.117 15 C 0.124 3.876 16 N -0.689 5.689 17 C 0.507 3.493 18 O -0.544 6.544 19 C 0.508 3.492 20 O -0.544 6.544 21 N -0.687 5.687 22 C 0.148 3.852 23 C -0.177 4.177 24 C -0.178 4.178 25 C -0.165 4.165 26 C 0.050 3.950 27 C 0.144 3.856 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.420 0.580 40 H 0.420 0.580 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.019 0.981 49 H 0.103 0.897 50 H 0.037 0.963 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.932 -15.803 -11.662 38.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.239 1.239 6 H -0.189 1.189 7 C -0.381 4.381 8 H 0.069 0.931 9 N -0.350 5.350 10 C -0.001 4.001 11 C -0.076 4.076 12 N -0.263 5.263 13 C -0.069 4.069 14 C -0.155 4.155 15 C 0.001 3.999 16 N -0.341 5.341 17 C 0.287 3.713 18 O -0.422 6.422 19 C 0.288 3.712 20 O -0.421 6.421 21 N -0.340 5.340 22 C 0.025 3.975 23 C -0.195 4.195 24 C -0.215 4.215 25 C -0.202 4.202 26 C -0.079 4.079 27 C 0.020 3.980 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.258 0.742 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.038 0.962 49 H 0.121 0.879 50 H 0.055 0.945 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 33.111 -15.458 -11.346 38.263 hybrid contribution -1.056 0.433 -0.240 1.166 sum 32.055 -15.025 -11.586 37.250 Atomic orbital electron populations 1.69965 1.07415 1.27246 1.55792 1.25881 0.95836 1.00973 1.00291 0.85878 0.78435 0.80046 0.77777 1.19763 1.23936 1.18929 1.18892 0.86684 0.93646 1.38834 0.93065 1.44562 1.07723 1.33622 1.49060 1.21458 0.96031 0.92008 0.90630 1.22433 0.93113 0.96100 0.95986 1.61886 1.23623 1.18939 1.21862 1.22023 0.93965 0.98203 0.92711 1.21676 0.96063 1.00255 0.97524 1.21437 0.86078 0.96186 0.96242 1.45797 1.25429 1.51115 1.11794 1.20127 0.83979 0.80419 0.86742 1.90767 1.75410 1.61213 1.14824 1.20111 0.83925 0.80418 0.86732 1.90781 1.75295 1.61166 1.14902 1.45772 1.25412 1.51085 1.11716 1.21102 0.85565 0.95785 0.95003 1.22410 1.00968 0.95969 1.00200 1.23183 1.02178 0.92345 1.03833 1.23059 0.91567 1.02573 1.03040 1.22547 0.97244 0.93293 0.94852 1.21205 0.91550 0.90655 0.94635 0.92936 0.94702 0.92962 0.88658 0.95884 0.89391 0.94697 0.90494 0.89717 0.90392 0.90962 0.74260 0.74201 0.90602 0.91020 0.86115 0.88557 0.87760 0.87349 0.88086 0.96249 0.87853 0.94496 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.81 13.97 21.65 0.30 -60.51 16 2 C -0.04 -2.08 5.24 84.86 0.44 -1.63 16 3 Si 0.95 47.14 24.31 68.60 1.67 48.80 16 4 H -0.27 -12.55 6.58 99.48 0.65 -11.90 16 5 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 6 H -0.26 -12.75 6.61 99.48 0.66 -12.09 16 7 C -0.25 -14.48 10.08 84.03 0.85 -13.64 16 8 H 0.05 3.22 8.05 -2.91 -0.02 3.20 16 9 N -0.62 -29.87 2.82 -698.11 -1.97 -31.83 16 10 C 0.12 5.28 4.35 86.35 0.38 5.66 16 11 C 0.05 1.77 5.62 86.38 0.49 2.25 16 12 N -0.54 -15.32 4.63 -895.27 -4.14 -19.47 16 13 C 0.06 1.19 4.96 86.30 0.43 1.62 16 14 C -0.12 -1.82 5.26 30.59 0.16 -1.66 16 15 C 0.12 1.85 5.68 86.38 0.49 2.34 16 16 N -0.69 -10.84 5.55 -464.41 -2.58 -13.41 16 17 C 0.51 9.41 7.89 87.27 0.69 10.10 16 18 O -0.54 -12.25 16.48 -3.24 -0.05 -12.30 16 19 C 0.51 8.99 7.89 87.27 0.69 9.68 16 20 O -0.54 -12.04 16.48 -3.26 -0.05 -12.10 16 21 N -0.69 -8.71 5.55 -464.42 -2.58 -11.28 16 22 C 0.15 1.50 5.96 86.38 0.51 2.02 16 23 C -0.18 -1.14 5.85 -10.79 -0.06 -1.20 16 24 C -0.18 -1.04 10.18 30.60 0.31 -0.73 16 25 C -0.16 -0.84 10.25 30.60 0.31 -0.53 16 26 C 0.05 1.50 5.46 86.38 0.47 1.97 16 27 C 0.14 5.57 6.69 86.35 0.58 6.14 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.04 1.48 6.94 -2.39 -0.02 1.46 16 30 H 0.05 2.45 4.61 -2.38 -0.01 2.44 16 31 H 0.10 2.62 7.99 -2.39 -0.02 2.60 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.58 7.97 -2.39 -0.02 1.56 16 34 H 0.03 0.72 8.13 -2.38 -0.02 0.70 16 35 H 0.08 1.18 6.40 -2.39 -0.02 1.16 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.42 5.82 7.94 -92.71 -0.74 5.08 16 40 H 0.42 4.33 7.87 -92.71 -0.73 3.60 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.81 7.87 -2.39 -0.02 0.79 16 43 H 0.12 0.61 8.04 -2.39 -0.02 0.59 16 44 H 0.10 0.60 8.03 -2.39 -0.02 0.58 16 45 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.10 2.41 6.16 -2.39 -0.01 2.40 16 50 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 51 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 Total: -1.00 -73.44 405.11 -3.30 -76.73 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -0.63 Total: 12.97 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 6.73 Total: 22.40 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -10.96 Total: -136.51 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.11 Total: -24.40 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.80 kcal Total: -73.44 -3.30 -76.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660905404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.028 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds