Wall clock time and date at job start Tue Mar 31 2020 22:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47452 * 300.00034 * 3 2 1 6 6 H 1.48504 * 109.46785 * 60.00276 * 3 2 1 7 7 C 1.38817 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00031 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99623 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46856 * 174.96667 * 10 9 7 12 12 N 1.46496 * 110.43523 * 307.72779 * 11 10 9 13 13 C 1.34775 * 120.00057 * 302.03882 * 12 11 10 14 14 O 1.21283 * 120.00117 * 354.80875 * 13 12 11 15 15 C 1.50701 * 120.00052 * 174.53904 * 13 12 11 16 16 N 1.46498 * 109.46981 * 179.97438 * 15 13 12 17 17 C 1.34783 * 120.00080 * 180.02562 * 16 15 13 18 18 O 1.21590 * 119.99696 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00377 * 179.97438 * 17 16 15 20 20 C 1.47027 * 125.64707 * 359.69076 * 19 17 16 21 21 C 1.54318 * 107.27664 * 180.97043 * 20 19 17 22 22 C 1.55154 * 102.86290 * 22.52219 * 21 20 19 23 23 C 1.47423 * 125.64983 * 179.97438 * 19 17 16 24 24 C 1.54885 * 110.59809 * 70.34737 * 11 10 9 25 25 C 1.54888 * 102.75010 * 156.67411 * 24 11 10 26 26 C 1.54262 * 104.19682 * 322.05854 * 25 24 11 27 27 C 1.53879 * 106.59725 * 23.60437 * 26 25 24 28 28 H 0.97001 * 119.99596 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00522 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47364 * 54.96885 * 10 9 7 31 31 H 1.09005 * 109.47193 * 294.96279 * 10 9 7 32 32 H 0.96995 * 119.99958 * 122.03754 * 12 11 10 33 33 H 1.08994 * 109.47017 * 299.99893 * 15 13 12 34 34 H 1.09001 * 109.46861 * 59.99822 * 15 13 12 35 35 H 0.97003 * 120.00133 * 359.97438 * 16 15 13 36 36 H 1.09005 * 109.87699 * 300.51117 * 20 19 17 37 37 H 1.09003 * 109.88404 * 61.67684 * 20 19 17 38 38 H 1.09001 * 110.91959 * 264.11313 * 21 20 19 39 39 H 1.08997 * 110.58745 * 140.78515 * 21 20 19 40 40 H 1.09002 * 111.00438 * 206.23336 * 22 21 20 41 41 H 1.09001 * 111.00373 * 82.37926 * 22 21 20 42 42 H 1.09000 * 110.36678 * 274.67375 * 23 19 17 43 43 H 1.09001 * 110.36639 * 36.88577 * 23 19 17 44 44 H 1.08997 * 110.75626 * 274.98894 * 24 11 10 45 45 H 1.09001 * 110.75713 * 38.36226 * 24 11 10 46 46 H 1.08999 * 110.49195 * 203.37890 * 25 24 11 47 47 H 1.09000 * 110.48812 * 80.73204 * 25 24 11 48 48 H 1.09000 * 110.03401 * 264.32289 * 26 25 24 49 49 H 1.08997 * 110.04060 * 142.89111 * 26 25 24 50 50 H 1.08998 * 110.03586 * 240.71585 * 27 26 25 51 51 H 1.09008 * 110.02807 * 119.28621 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0684 -4.8170 0.1237 12 7 0.1817 -4.6113 1.2715 13 6 0.7010 -4.4660 2.5067 14 8 1.8936 -4.5991 2.6827 15 6 -0.1994 -4.1321 3.6681 16 7 0.5998 -4.0292 4.8916 17 6 0.0026 -3.7371 6.0641 18 8 -1.1994 -3.5585 6.1062 19 7 0.7376 -3.6430 7.1898 20 6 2.1916 -3.8402 7.2827 21 6 2.5852 -3.6576 8.7636 22 6 1.2544 -3.9351 9.5114 23 6 0.2161 -3.3309 8.5329 24 6 0.2432 -4.9723 -1.1778 25 6 -0.2073 -6.4532 -1.1223 26 6 1.0102 -7.1972 -0.5359 27 6 1.8213 -6.1569 0.2563 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.7499 -3.6769 0.8404 31 1 2.6160 -3.7542 -0.9329 32 1 -0.7791 -4.5796 1.1426 33 1 -0.6990 -3.1820 3.4791 34 1 -0.9456 -4.9177 3.7869 35 1 1.5586 -4.1721 4.8581 36 1 2.4514 -4.8451 6.9494 37 1 2.7061 -3.0997 6.6703 38 1 2.9288 -2.6406 8.9525 39 1 3.3469 -4.3827 9.0500 40 1 1.2313 -3.4204 10.4720 41 1 1.0940 -5.0056 9.6396 42 1 0.1468 -2.2520 8.6717 43 1 -0.7594 -3.7949 8.6783 44 1 -0.6192 -4.3057 -1.1703 45 1 0.8657 -4.7905 -2.0539 46 1 -0.4333 -6.8210 -2.1232 47 1 -1.0730 -6.5644 -0.4695 48 1 1.6182 -7.6108 -1.3405 49 1 0.6763 -7.9946 0.1280 50 1 2.8229 -6.0655 -0.1638 51 1 1.8810 -6.4494 1.3047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665921631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:51 Heat of formation + Delta-G solvation = -54.671899 kcal Electronic energy + Delta-G solvation = -30692.013686 eV Core-core repulsion = 26626.284906 eV Total energy + Delta-G solvation = -4065.728780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.44669 -39.89160 -37.91724 -37.26611 -34.38017 -34.18197 -33.13067 -31.74673 -31.04534 -29.27871 -28.70128 -28.43560 -26.91098 -24.48666 -23.51779 -22.19716 -21.45891 -20.86303 -20.29762 -19.96701 -19.00892 -18.47297 -17.08927 -16.78093 -16.39766 -16.12855 -15.73596 -15.36221 -14.96943 -14.74876 -14.52379 -14.32090 -13.99583 -13.77485 -13.42636 -13.28283 -13.14053 -12.96986 -12.88070 -12.71142 -12.55377 -12.20844 -12.05842 -11.60040 -11.46678 -11.41461 -11.30089 -11.08390 -11.02790 -10.91722 -10.82527 -10.71131 -10.40664 -10.32629 -10.16881 -9.99159 -9.68840 -9.44666 -9.11745 -8.79698 -8.62320 -8.54131 -6.84368 -5.72824 -2.99235 2.49570 2.93357 3.25526 3.45206 3.47863 3.51797 3.53613 4.03021 4.33839 4.42646 4.59117 4.64936 4.70207 4.80899 4.93489 5.02562 5.05173 5.14114 5.38967 5.44517 5.46004 5.50908 5.58592 5.59834 5.62680 5.63793 5.67197 5.67879 5.73700 5.76363 5.88901 5.91777 5.96018 6.01375 6.13973 6.19806 6.29435 6.32002 6.42842 6.47598 6.55167 6.59236 6.88845 7.02669 7.10093 7.75431 7.83114 7.99117 8.46594 8.52691 8.63292 9.58309 10.15972 10.51847 11.50269 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.003718 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.516693 B = 7529.706746 C = 9923.761137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.146 3.854 11 C 0.170 3.830 12 N -0.702 5.702 13 C 0.523 3.477 14 O -0.536 6.536 15 C 0.119 3.881 16 N -0.727 5.727 17 C 0.726 3.274 18 O -0.592 6.592 19 N -0.638 5.638 20 C 0.096 3.904 21 C -0.129 4.129 22 C -0.134 4.134 23 C 0.125 3.875 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.123 4.123 28 H 0.253 0.747 29 H 0.382 0.618 30 H 0.043 0.957 31 H 0.021 0.979 32 H 0.399 0.601 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.407 0.593 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.071 0.929 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -15.094 11.757 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.018 3.982 11 C 0.084 3.916 12 N -0.352 5.352 13 C 0.308 3.692 14 O -0.413 6.413 15 C -0.009 4.009 16 N -0.385 5.385 17 C 0.427 3.573 18 O -0.470 6.470 19 N -0.377 5.377 20 C -0.027 4.027 21 C -0.167 4.167 22 C -0.172 4.172 23 C 0.002 3.998 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.162 4.162 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.233 0.767 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.409 -14.935 11.791 19.080 hybrid contribution 0.188 1.073 -0.182 1.104 sum 1.597 -13.862 11.610 18.152 Atomic orbital electron populations 1.69651 1.04985 1.25338 1.58370 1.24674 0.95496 0.97459 1.03374 0.86158 0.78825 0.84390 0.77106 1.20661 1.21958 1.22015 1.19258 0.90997 0.84193 1.41819 0.91391 1.42199 1.05626 0.99687 1.89388 1.21050 0.93434 0.85057 0.98680 1.21395 0.90576 0.95040 0.84550 1.45663 1.10107 1.73311 1.06148 1.20165 0.88773 0.76144 0.84109 1.90630 1.15698 1.50559 1.84380 1.20904 0.93208 1.04218 0.82587 1.44683 1.12190 1.76083 1.05544 1.15274 0.84496 0.78086 0.79411 1.90924 1.12471 1.58403 1.85245 1.47493 1.07849 1.75220 1.07173 1.22037 0.81203 1.01483 0.98008 1.22603 0.97743 1.02905 0.93486 1.22809 0.94491 1.01723 0.98201 1.22064 0.97911 1.00019 0.79855 1.22734 1.00298 0.95814 0.96866 1.22406 0.97739 0.95616 1.00549 1.22138 0.96817 0.97926 0.99153 1.22445 0.98957 0.93663 1.01168 0.93724 0.78454 0.93874 0.96187 0.76709 0.87999 0.89152 0.75523 0.91509 0.91225 0.90338 0.89969 0.89727 0.90604 0.91629 0.90380 0.90500 0.89762 0.91771 0.91873 0.92076 0.92390 0.91052 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.06 5.31 -59.90 -0.32 -18.37 16 10 C 0.15 3.02 4.75 -4.04 -0.02 3.00 16 11 C 0.17 2.68 0.40 -130.16 -0.05 2.63 16 12 N -0.70 -10.55 4.54 -46.08 -0.21 -10.76 16 13 C 0.52 8.60 7.14 -10.99 -0.08 8.52 16 14 O -0.54 -10.06 12.61 5.55 0.07 -9.99 16 15 C 0.12 1.81 6.16 -5.19 -0.03 1.78 16 16 N -0.73 -11.18 5.49 -66.42 -0.36 -11.54 16 17 C 0.73 11.79 8.49 -86.92 -0.74 11.05 16 18 O -0.59 -11.53 16.60 5.29 0.09 -11.44 16 19 N -0.64 -8.18 3.33 -176.22 -0.59 -8.77 16 20 C 0.10 0.94 6.14 -3.06 -0.02 0.92 16 21 C -0.13 -0.90 6.95 -24.90 -0.17 -1.07 16 22 C -0.13 -0.93 7.08 -24.57 -0.17 -1.10 16 23 C 0.12 1.29 6.91 -2.52 -0.02 1.28 16 24 C -0.12 -1.66 5.66 -24.74 -0.14 -1.80 16 25 C -0.13 -1.38 6.79 -25.08 -0.17 -1.55 16 26 C -0.12 -1.37 6.80 -25.61 -0.17 -1.55 16 27 C -0.12 -1.72 5.67 -25.61 -0.15 -1.86 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.38 9.78 7.27 -40.82 -0.30 9.48 16 30 H 0.04 0.99 6.54 -51.93 -0.34 0.65 16 31 H 0.02 0.42 8.02 -51.93 -0.42 0.01 16 32 H 0.40 5.14 8.49 -40.82 -0.35 4.79 16 33 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.41 6.06 6.42 -40.82 -0.26 5.80 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 44 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 45 H 0.08 1.22 7.97 -51.93 -0.41 0.80 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.07 1.00 7.84 -51.93 -0.41 0.60 16 51 H 0.07 1.11 6.55 -51.92 -0.34 0.77 16 LS Contribution 403.46 15.07 6.08 6.08 Total: -1.00 -35.06 403.46 -10.42 -45.48 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -8.70 Total: 15.81 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -2.18 Total: 13.02 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -0.75 Total: -76.86 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.16 Total: -21.43 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.06 -10.42 -45.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665921631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.190 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds