Wall clock time and date at job start Tue Mar 31 2020 22:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46869 * 275.14189 * 3 2 1 5 5 H 1.48494 * 109.47078 * 155.14612 * 3 2 1 6 6 H 1.48499 * 109.47255 * 35.14145 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00055 * 32.50794 * 7 2 1 9 9 N 1.36936 * 119.99670 * 212.51259 * 7 2 1 10 10 C 1.46501 * 120.00326 * 32.66073 * 9 7 2 11 11 C 1.52999 * 109.46833 * 95.35707 * 10 9 7 12 12 N 1.46502 * 109.47131 * 183.37173 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99786 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00360 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.48809 * 38.74204 * 15 13 12 17 17 C 1.54102 * 110.54430 * 275.89407 * 15 13 12 18 18 N 1.47053 * 103.86190 * 241.40209 * 17 15 13 19 19 C 1.33952 * 109.17812 * 0.02562 * 18 17 15 20 20 O 1.21585 * 123.04223 * 180.02562 * 19 18 17 21 21 N 1.33942 * 113.91307 * 359.97438 * 19 18 17 22 22 C 1.46501 * 119.99707 * 212.66520 * 9 7 2 23 23 C 1.54241 * 108.89714 * 62.88108 * 22 9 7 24 24 C 1.50480 * 108.52628 * 159.26627 * 23 22 9 25 25 C 1.54061 * 112.49953 * 94.14815 * 24 23 22 26 26 C 1.54063 * 112.82020 * 318.28627 * 25 24 23 27 27 C 1.50474 * 112.49308 * 318.28552 * 26 25 24 28 28 C 1.45539 * 108.89712 * 299.99749 * 22 9 7 29 29 H 0.96993 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46937 * 215.35308 * 10 9 7 31 31 H 1.08989 * 109.47168 * 335.35697 * 10 9 7 32 32 H 1.09000 * 109.47114 * 303.36842 * 11 10 9 33 33 H 1.08998 * 109.47409 * 63.37076 * 11 10 9 34 34 H 0.96998 * 119.99448 * 359.97438 * 12 11 10 35 35 H 1.08996 * 110.55410 * 359.97438 * 17 15 13 36 36 H 1.09004 * 110.54912 * 122.81178 * 17 15 13 37 37 H 0.97006 * 125.41540 * 180.02562 * 18 17 15 38 38 H 0.97002 * 125.40817 * 179.97438 * 21 19 18 39 39 H 1.09001 * 108.87399 * 181.39509 * 22 9 7 40 40 H 1.08999 * 109.62892 * 278.96999 * 23 22 9 41 41 H 1.08994 * 109.63041 * 39.55393 * 23 22 9 42 42 H 1.09000 * 108.87288 * 333.36852 * 24 23 22 43 43 H 1.09005 * 108.79760 * 214.87934 * 24 23 22 44 44 H 1.09003 * 108.81486 * 197.42146 * 25 24 23 45 45 H 1.09004 * 108.81512 * 79.14928 * 25 24 23 46 46 H 1.09002 * 108.87863 * 197.50976 * 26 25 24 47 47 H 1.08996 * 108.79649 * 79.00459 * 26 25 24 48 48 H 1.09004 * 109.63046 * 334.43921 * 27 26 25 49 49 H 1.09002 * 109.78790 * 213.96046 * 27 26 25 50 50 H 1.09006 * 108.89458 * 303.44499 * 28 22 9 51 51 H 1.09004 * 108.89388 * 61.93628 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3890 2.1091 -1.3945 5 1 3.5978 1.4113 0.5884 6 1 1.5062 2.6189 0.8059 7 6 2.0103 -1.2021 0.0005 8 1 1.5972 -2.0643 -0.5017 9 7 3.2187 -1.2947 0.6380 10 6 3.4739 -0.5016 1.8430 11 6 3.1762 -1.3474 3.0827 12 7 3.3539 -0.5303 4.2856 13 6 3.1452 -1.0691 5.5032 14 8 2.8099 -2.2304 5.6031 15 6 3.3274 -0.2283 6.7406 16 1 2.9573 0.7830 6.5725 17 6 4.8090 -0.2022 7.1633 18 7 4.8035 -0.8058 8.5043 19 6 3.5478 -1.1373 8.8325 20 8 3.2545 -1.6561 9.8922 21 7 2.6444 -0.8443 7.8879 22 6 4.2563 -2.1868 0.1149 23 6 4.6656 -1.7059 -1.2923 24 6 6.0264 -2.2637 -1.6112 25 6 5.9518 -3.5865 -2.3974 26 6 4.8567 -4.5337 -1.8707 27 6 4.8011 -4.5699 -0.3675 28 6 3.7466 -3.5500 0.1086 29 1 -0.4850 0.8400 -0.0004 30 1 4.5182 -0.1897 1.8582 31 1 2.8316 0.3789 1.8412 32 1 2.1490 -1.7092 3.0377 33 1 3.8592 -2.1963 3.1160 34 1 3.6224 0.3984 4.2057 35 1 5.4129 -0.7976 6.4786 36 1 5.1764 0.8231 7.2069 37 1 5.5850 -0.9424 9.0625 38 1 1.6911 -1.0123 7.9506 39 1 5.1261 -2.1383 0.7699 40 1 3.9427 -2.0626 -2.0259 41 1 4.7030 -0.6167 -1.3105 42 1 6.5636 -2.4373 -0.6788 43 1 6.5760 -1.5319 -2.2033 44 1 6.9156 -4.0910 -2.3289 45 1 5.7487 -3.3622 -3.4446 46 1 5.0530 -5.5400 -2.2408 47 1 3.8913 -4.2004 -2.2514 48 1 5.7765 -4.3061 0.0415 49 1 4.5218 -5.5689 -0.0325 50 1 3.4311 -3.8136 1.1182 51 1 2.8824 -3.6007 -0.5538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670977672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:21 Heat of formation + Delta-G solvation = -60.209642 kcal Electronic energy + Delta-G solvation = -30608.733303 eV Core-core repulsion = 26542.764388 eV Total energy + Delta-G solvation = -4065.968915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.34191 -40.46171 -40.05589 -37.55848 -37.22219 -35.61657 -34.02396 -33.82952 -32.88810 -32.13568 -30.63518 -28.95781 -26.28050 -25.56803 -25.22432 -24.10409 -22.85408 -22.79776 -21.64163 -21.20156 -19.98026 -19.21688 -18.75371 -18.13267 -17.48267 -17.29753 -17.05146 -16.66609 -16.38128 -16.19552 -16.05349 -15.44182 -15.30070 -15.18105 -15.01526 -14.92498 -14.69581 -14.40187 -13.98527 -13.88122 -13.82352 -13.73667 -13.53374 -13.20631 -12.96777 -12.86866 -12.63870 -12.34624 -12.05292 -11.71645 -11.64795 -11.60936 -11.40535 -11.30758 -11.24546 -11.15980 -11.07301 -10.83837 -10.57551 -10.49759 -10.09855 -9.84757 -8.78618 -8.14832 -5.38785 1.37628 1.39158 1.53045 1.57973 1.72231 1.95301 2.20338 2.51127 3.01444 3.09966 3.31677 3.38775 3.67101 3.86386 3.99564 4.06289 4.15963 4.22529 4.27424 4.37531 4.41679 4.45646 4.52893 4.59532 4.64210 4.67544 4.70129 4.71768 4.87454 5.00741 5.01983 5.10012 5.16727 5.19561 5.31015 5.39215 5.41444 5.46088 5.47539 5.49232 5.64390 5.72450 5.78862 5.87563 6.00641 6.19383 6.27219 6.28372 6.55357 7.06409 7.21038 7.50055 7.75161 8.13181 9.05531 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.003124 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.418173 B = 8960.281768 C =10394.565493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.018 4.018 3 Si 0.915 3.085 4 H -0.310 1.310 5 H -0.217 1.217 6 H -0.298 1.298 7 C -0.248 4.248 8 H 0.034 0.966 9 N -0.607 5.607 10 C 0.139 3.861 11 C 0.115 3.885 12 N -0.703 5.703 13 C 0.496 3.504 14 O -0.581 6.581 15 C 0.107 3.893 16 H 0.161 0.839 17 C 0.108 3.892 18 N -0.728 5.728 19 C 0.695 3.305 20 O -0.640 6.640 21 N -0.718 5.718 22 C 0.179 3.821 23 C -0.114 4.114 24 C -0.111 4.111 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.104 4.104 28 C -0.117 4.117 29 H 0.259 0.741 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.419 0.581 35 H 0.093 0.907 36 H 0.147 0.853 37 H 0.441 0.559 38 H 0.432 0.568 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.037 0.963 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.036 0.964 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.246 3.372 6.025 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.215 4.215 3 Si 0.742 3.258 4 H -0.239 1.239 5 H -0.139 1.139 6 H -0.225 1.225 7 C -0.378 4.378 8 H 0.052 0.948 9 N -0.329 5.329 10 C 0.013 3.987 11 C -0.012 4.012 12 N -0.356 5.356 13 C 0.280 3.720 14 O -0.460 6.460 15 C -0.003 4.003 16 H 0.178 0.822 17 C -0.017 4.017 18 N -0.391 5.391 19 C 0.394 3.606 20 O -0.522 6.522 21 N -0.378 5.378 22 C 0.074 3.926 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.257 0.743 35 H 0.112 0.888 36 H 0.165 0.835 37 H 0.285 0.715 38 H 0.274 0.726 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.055 0.945 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 17.758 2.387 6.568 19.084 hybrid contribution -1.127 0.747 -0.391 1.408 sum 16.631 3.134 6.177 18.016 Atomic orbital electron populations 1.70185 1.08286 1.27287 1.52699 1.25937 0.95194 1.01047 0.99300 0.86405 0.82010 0.80541 0.76835 1.23859 1.13935 1.22522 1.18392 0.94396 0.94073 1.30939 0.94783 1.44317 1.13030 1.50515 1.24995 1.21510 0.99887 0.92963 0.84326 1.21924 0.99660 0.95043 0.84551 1.45854 1.68773 1.16154 1.04815 1.21458 0.76809 0.87951 0.85746 1.90755 1.48125 1.19766 1.87317 1.22205 0.95588 0.98598 0.83929 0.82165 1.22597 0.92301 1.03276 0.83511 1.45025 1.07428 1.66283 1.20358 1.16167 0.82934 0.78300 0.83210 1.90948 1.82455 1.51963 1.26857 1.44924 1.10246 1.66310 1.16300 1.19551 0.89964 0.89173 0.93864 1.21603 0.96919 0.99297 0.97545 1.21294 0.96062 0.96743 1.00824 1.21871 0.98853 0.95058 0.99005 1.21315 0.98883 0.99595 0.95731 1.21230 0.99036 0.98012 0.95979 1.20824 0.98547 0.96476 0.99739 0.93218 0.90154 0.93427 0.95519 0.92545 0.74328 0.88839 0.83510 0.71495 0.72592 0.90966 0.94218 0.93592 0.91144 0.91798 0.90639 0.92729 0.91358 0.94380 0.90351 0.91996 0.94545 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.97 21.65 0.30 -56.13 16 2 C -0.02 -0.98 5.09 84.86 0.43 -0.55 16 3 Si 0.92 40.14 26.15 68.60 1.79 41.94 16 4 H -0.31 -14.39 7.11 99.48 0.71 -13.69 16 5 H -0.22 -7.87 5.54 99.48 0.55 -7.32 16 6 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.25 -12.93 8.93 84.03 0.75 -12.18 16 8 H 0.03 2.05 6.89 -2.91 -0.02 2.03 16 9 N -0.61 -24.75 1.99 -688.49 -1.37 -26.13 16 10 C 0.14 4.74 3.83 86.38 0.33 5.07 16 11 C 0.12 3.80 6.00 86.38 0.52 4.32 16 12 N -0.70 -16.13 5.56 -463.05 -2.57 -18.70 16 13 C 0.50 12.28 6.93 87.66 0.61 12.89 16 14 O -0.58 -21.40 16.60 -3.06 -0.05 -21.45 16 15 C 0.11 1.59 4.17 44.51 0.19 1.78 16 16 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 17 C 0.11 0.98 7.70 86.65 0.67 1.64 16 18 N -0.73 -11.42 6.37 -477.35 -3.04 -14.47 16 19 C 0.70 17.88 8.92 179.57 1.60 19.48 16 20 O -0.64 -22.79 18.05 -3.98 -0.07 -22.86 16 21 N -0.72 -15.80 5.63 -460.38 -2.59 -18.39 16 22 C 0.18 6.03 2.12 43.13 0.09 6.13 16 23 C -0.11 -3.68 4.69 30.20 0.14 -3.54 16 24 C -0.11 -2.59 5.31 30.14 0.16 -2.43 16 25 C -0.11 -2.35 5.85 31.31 0.18 -2.16 16 26 C -0.12 -2.87 5.32 30.14 0.16 -2.71 16 27 C -0.10 -2.67 5.61 30.20 0.17 -2.50 16 28 C -0.12 -4.01 4.44 28.73 0.13 -3.88 16 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.08 2.15 8.01 -2.39 -0.02 2.13 16 31 H 0.05 1.76 3.95 -2.39 -0.01 1.75 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.42 6.04 8.47 -92.71 -0.79 5.25 16 35 H 0.09 0.83 7.72 -2.39 -0.02 0.81 16 36 H 0.15 0.00 8.14 -2.39 -0.02 -0.01 16 37 H 0.44 5.13 8.96 -92.70 -0.83 4.30 16 38 H 0.43 9.71 8.96 -92.71 -0.83 8.88 16 39 H 0.07 2.08 7.16 -2.39 -0.02 2.06 16 40 H 0.04 1.46 6.97 -2.39 -0.02 1.45 16 41 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 42 H 0.07 1.45 6.63 -2.39 -0.02 1.43 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.04 1.12 6.63 -2.39 -0.02 1.11 16 48 H 0.08 1.72 6.98 -2.38 -0.02 1.71 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 51 H 0.03 1.34 6.15 -2.39 -0.01 1.33 16 Total: -1.00 -83.34 390.30 -3.11 -86.45 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -1.63 Total: 28.39 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.13 Total: 21.35 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -9.28 Total: -133.81 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.12 Total: -44.31 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.79 Total: 41.94 kcal Total: -83.34 -3.11 -86.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670977672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.244 kcal (2) G-P(sol) polarization free energy of solvation -83.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds