Wall clock time and date at job start Tue Mar 31 2020 21:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99742 * 2 1 4 4 C 1.53005 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.43492 * 294.54043 * 4 3 2 6 6 O 1.21279 * 119.99899 * 111.55325 * 5 4 3 7 7 N 1.34776 * 120.00010 * 291.55494 * 5 4 3 8 8 C 1.47127 * 121.05746 * 3.16055 * 7 5 4 9 9 C 1.53226 * 108.73478 * 127.78488 * 8 7 5 10 10 O 1.43109 * 109.34588 * 54.11267 * 9 8 7 11 11 C 1.42491 * 113.97024 * 300.04551 * 10 9 8 12 12 C 1.53472 * 113.75993 * 286.83964 * 11 10 9 13 13 N 1.47665 * 85.96856 * 268.70912 * 12 11 10 14 14 C 1.36939 * 134.44966 * 155.67540 * 13 12 11 15 15 H 1.08001 * 119.99462 * 180.02562 * 14 13 12 16 16 C 1.38809 * 120.00738 * 0.04918 * 14 13 12 17 17 N 1.31623 * 119.99150 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00430 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47179 * 59.99745 * 18 16 14 20 20 H 1.48505 * 109.47173 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46846 * 299.99682 * 18 16 14 22 22 C 1.47666 * 91.09045 * 335.71138 * 13 12 11 23 23 C 1.47344 * 121.05628 * 182.88294 * 7 5 4 24 24 C 1.54887 * 110.59965 * 57.15863 * 4 3 2 25 25 C 1.54890 * 102.74931 * 156.67651 * 24 4 3 26 26 C 1.54271 * 104.19360 * 322.05610 * 25 24 4 27 27 C 1.53872 * 106.59682 * 23.61369 * 26 25 24 28 28 H 1.08993 * 109.47187 * 300.00365 * 1 2 3 29 29 H 1.08999 * 109.46685 * 60.00017 * 1 2 3 30 30 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47285 * 59.99697 * 3 2 1 32 32 H 1.08998 * 109.47171 * 299.99589 * 3 2 1 33 33 H 1.09000 * 109.59257 * 247.55856 * 8 7 5 34 34 H 1.09002 * 109.59171 * 7.86121 * 8 7 5 35 35 H 1.08998 * 109.49247 * 174.07655 * 9 8 7 36 36 H 1.09005 * 109.49229 * 294.15185 * 9 8 7 37 37 H 1.09000 * 113.79048 * 22.97764 * 12 11 10 38 38 H 1.09003 * 113.79030 * 154.44485 * 12 11 10 39 39 H 0.97006 * 119.99358 * 180.02562 * 17 16 14 40 40 H 1.09002 * 113.79472 * 270.02698 * 22 13 12 41 41 H 1.08997 * 113.89930 * 138.57407 * 22 13 12 42 42 H 1.09006 * 109.74491 * 348.03823 * 23 7 5 43 43 H 1.08996 * 109.75244 * 108.76414 * 23 7 5 44 44 H 1.08994 * 110.75627 * 274.99273 * 24 4 3 45 45 H 1.09000 * 110.75240 * 38.36048 * 24 4 3 46 46 H 1.08998 * 110.48600 * 203.38443 * 25 24 4 47 47 H 1.08997 * 110.59592 * 80.79165 * 25 24 4 48 48 H 1.08996 * 110.03378 * 264.32557 * 26 25 24 49 49 H 1.09001 * 110.07064 * 142.91762 * 26 25 24 50 50 H 1.09007 * 110.03173 * 240.71331 * 27 26 25 51 51 H 1.09000 * 110.07387 * 119.30674 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0132 0.5587 1.2855 6 8 4.5003 -0.5520 1.2746 7 7 3.8990 1.2330 2.4469 8 6 3.2497 2.5522 2.4979 9 6 2.1698 2.5275 3.5847 10 8 2.7507 2.0994 4.8205 11 6 3.3287 0.7981 4.7685 12 6 2.2957 -0.3359 4.7215 13 7 2.3886 -0.3411 6.1953 14 6 1.5542 -0.7341 7.2074 15 1 1.8666 -0.6299 8.2360 16 6 0.3070 -1.2669 6.9115 17 7 -0.0733 -1.3947 5.6579 18 14 -0.8315 -1.8023 8.2922 19 1 -1.1360 -0.6381 9.1623 20 1 -2.0928 -2.3335 7.7158 21 1 -0.1705 -2.8616 9.0961 22 6 3.7415 0.2482 6.1401 23 6 4.4152 0.6698 3.7068 24 6 4.0172 0.3576 -1.2171 25 6 5.4785 0.8374 -1.3997 26 6 5.4222 2.3478 -1.0909 27 6 4.1868 2.5685 -0.2004 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.9906 3.3153 2.7362 34 1 2.7947 2.7732 1.5323 35 1 1.7527 3.5272 3.7058 36 1 1.3787 1.8355 3.2956 37 1 1.3210 -0.0275 4.3434 38 1 2.6656 -1.2487 4.2544 39 1 -0.9450 -1.7667 5.4511 40 1 4.5416 -0.4907 6.0950 41 1 3.9175 1.0207 6.8887 42 1 4.6673 -0.3811 3.5644 43 1 5.3006 1.2220 4.0217 44 1 3.9856 -0.7093 -0.9963 45 1 3.4216 0.5881 -2.1005 46 1 5.8098 0.6697 -2.4245 47 1 6.1396 0.3288 -0.6980 48 1 5.3215 2.9147 -2.0164 49 1 6.3239 2.6552 -0.5613 50 1 3.4865 3.2426 -0.6939 51 1 4.4883 2.9827 0.7617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673511007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:56 Heat of formation + Delta-G solvation = -47.119719 kcal Electronic energy + Delta-G solvation = -32674.407856 eV Core-core repulsion = 28576.713811 eV Total energy + Delta-G solvation = -4097.694044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.05862 -39.35537 -37.64711 -36.76791 -36.23115 -34.45885 -32.27860 -31.18458 -29.86472 -28.82987 -27.89583 -26.71952 -25.95706 -25.03575 -24.42941 -23.37833 -22.54642 -20.95518 -20.61609 -18.82713 -18.67148 -17.06083 -16.80480 -16.38480 -16.08252 -15.93175 -15.84915 -15.40992 -15.09195 -14.84065 -14.62353 -14.33108 -14.10295 -13.92160 -13.40471 -13.37425 -13.27656 -13.22263 -12.59366 -12.53652 -12.27055 -11.92842 -11.61836 -11.57825 -11.34230 -11.28798 -11.19281 -11.10755 -11.02415 -10.84851 -10.79886 -10.77819 -10.61803 -10.55300 -10.17679 -9.90307 -9.72927 -9.54749 -9.29351 -9.18050 -8.77954 -8.16818 -6.83221 -5.70537 -3.02832 2.81424 3.03344 3.43318 3.46708 3.48078 3.60364 4.06157 4.26376 4.42142 4.48572 4.53638 4.74622 4.88697 4.92566 4.98994 5.14040 5.15205 5.20297 5.27629 5.29612 5.32463 5.34088 5.38279 5.41912 5.46686 5.50209 5.59250 5.63446 5.65884 5.76696 5.76860 5.80601 5.84556 5.89737 5.99894 6.02360 6.11961 6.20837 6.32222 6.34167 6.51993 6.52798 6.64840 7.07241 7.11119 7.24941 7.54572 7.55536 7.84733 8.02479 8.37905 9.08936 9.75756 10.62894 11.46259 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003776 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.018516 B = 7412.683154 C = 8149.071023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.068 3.932 4 C -0.081 4.081 5 C 0.540 3.460 6 O -0.528 6.528 7 N -0.609 5.609 8 C 0.063 3.937 9 C 0.046 3.954 10 O -0.341 6.341 11 C 0.049 3.951 12 C 0.155 3.845 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.136 3.864 23 C 0.101 3.899 24 C -0.093 4.093 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.122 4.122 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.253 0.747 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 11.786 -16.371 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C -0.009 4.009 4 C -0.085 4.085 5 C 0.328 3.672 6 O -0.404 6.404 7 N -0.343 5.343 8 C -0.060 4.060 9 C -0.032 4.032 10 O -0.258 6.258 11 C 0.007 3.993 12 C 0.029 3.971 13 N -0.329 5.329 14 C -0.347 4.347 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.010 3.990 23 C -0.022 4.022 24 C -0.130 4.130 25 C -0.165 4.165 26 C -0.160 4.160 27 C -0.160 4.160 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.296 10.985 -16.062 20.782 hybrid contribution -1.022 -0.187 0.541 1.171 sum 6.274 10.798 -15.522 19.922 Atomic orbital electron populations 1.22766 0.80601 1.03295 0.99761 1.87996 1.19884 1.26394 1.95293 1.22763 0.91129 0.86151 1.00822 1.21628 0.94458 0.97374 0.95006 1.20037 0.78001 0.85122 0.84037 1.90660 1.44835 1.18849 1.86046 1.48042 1.59077 1.19446 1.07780 1.22780 0.96828 0.85197 1.01192 1.22884 0.94542 1.00778 0.85016 1.87925 1.75369 1.31436 1.31112 1.23600 0.94474 0.85298 0.95921 1.22647 0.96784 0.92136 0.85518 1.45779 1.11635 1.73463 1.02066 1.18950 0.94851 1.34597 0.86273 0.90231 1.24757 0.97649 1.01533 0.96433 1.69825 1.20595 1.50435 1.16005 0.86201 0.80161 0.78428 0.80973 1.21116 1.21624 1.21205 1.22476 0.90008 0.94468 0.92064 1.22135 0.96441 1.01122 0.82539 1.22310 0.94999 1.01078 0.94661 1.22396 0.97464 0.95080 1.01523 1.22125 0.97499 0.97063 0.99296 1.22493 0.97657 0.94500 1.01346 0.93608 0.94404 0.89315 0.92305 0.92354 0.90649 0.88564 0.88252 0.92276 0.90736 0.94871 0.93744 0.93297 0.92667 0.88056 0.91500 0.89447 0.91028 0.91546 0.91151 0.91562 0.91730 0.90502 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.60 10.11 -35.23 -0.36 -5.96 16 3 C 0.07 0.80 4.42 37.16 0.16 0.96 16 4 C -0.08 -0.98 0.35 -154.00 -0.05 -1.04 16 5 C 0.54 8.67 6.10 -10.99 -0.07 8.60 16 6 O -0.53 -10.46 15.10 5.56 0.08 -10.38 16 7 N -0.61 -9.32 2.97 -172.69 -0.51 -9.84 16 8 C 0.06 0.76 4.06 -3.58 -0.01 0.75 16 9 C 0.05 0.68 6.83 37.27 0.25 0.94 16 10 O -0.34 -6.61 10.52 -35.23 -0.37 -6.98 16 11 C 0.05 0.98 1.21 -90.53 -0.11 0.87 16 12 C 0.15 3.86 6.64 -3.17 -0.02 3.84 16 13 N -0.60 -16.17 3.70 -180.34 -0.67 -16.83 16 14 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 15 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -28.03 11.39 55.49 0.63 -27.40 16 18 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.14 2.92 8.33 -3.18 -0.03 2.89 16 23 C 0.10 1.72 5.76 -3.86 -0.02 1.70 16 24 C -0.09 -1.10 5.19 -24.74 -0.13 -1.23 16 25 C -0.13 -1.31 6.58 -25.07 -0.16 -1.47 16 26 C -0.12 -1.04 6.80 -25.61 -0.17 -1.21 16 27 C -0.12 -1.08 4.66 -25.62 -0.12 -1.20 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.67 5.40 -51.93 -0.28 0.39 16 32 H 0.06 0.52 8.01 -51.93 -0.42 0.11 16 33 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 34 H 0.10 0.94 3.27 -51.93 -0.17 0.77 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.01 7.19 -51.93 -0.37 0.64 16 37 H 0.07 2.06 6.30 -51.93 -0.33 1.74 16 38 H 0.03 0.89 7.92 -51.93 -0.41 0.48 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 1.91 6.87 -51.93 -0.36 1.55 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.29 7.28 -51.93 -0.38 0.91 16 45 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.51 7.75 -51.93 -0.40 0.11 16 51 H 0.08 0.71 5.30 -51.93 -0.27 0.43 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -35.60 385.65 -8.44 -44.04 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.41 Total: 0.81 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 0.37 Total: 9.07 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.55 Total: -54.07 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.64 Total: -23.32 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.60 -8.44 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673511007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.082 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds