Wall clock time and date at job start Tue Mar 31 2020 21:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00491 * 2 1 4 4 H 1.09003 * 109.46711 * 329.18638 * 3 2 1 5 5 C 1.50701 * 109.47005 * 89.18391 * 3 2 1 6 6 O 1.21278 * 120.00045 * 5.00115 * 5 3 2 7 7 N 1.34778 * 119.99733 * 185.00515 * 5 3 2 8 8 C 1.46504 * 120.00014 * 180.02562 * 7 5 3 9 9 H 1.09004 * 110.73383 * 36.95565 * 8 7 5 10 10 C 1.54470 * 110.82174 * 273.54378 * 8 7 5 11 11 O 1.43519 * 107.57681 * 220.41176 * 10 8 7 12 12 C 1.42546 * 109.63561 * 359.36349 * 11 10 8 13 13 C 1.52955 * 116.16027 * 253.33674 * 12 11 10 14 14 N 1.47765 * 85.80553 * 218.94420 * 13 12 11 15 15 C 1.36940 * 134.41033 * 203.94602 * 14 13 12 16 16 H 1.08007 * 120.00216 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99812 * 359.96222 * 15 14 13 18 18 N 1.31616 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46788 * 90.00169 * 19 17 15 21 21 H 1.48500 * 109.46781 * 210.00224 * 19 17 15 22 22 H 1.48498 * 109.46990 * 330.00557 * 19 17 15 23 23 C 1.47770 * 91.18583 * 23.91810 * 14 13 12 24 24 C 1.54006 * 106.48788 * 23.03779 * 12 11 10 25 25 C 1.52995 * 109.47261 * 209.18380 * 3 2 1 26 26 C 1.54889 * 110.76017 * 311.00629 * 25 3 2 27 27 C 1.54261 * 104.19430 * 156.25604 * 26 25 3 28 28 C 1.53872 * 106.60115 * 336.39074 * 27 26 25 29 29 C 1.54259 * 106.59863 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47237 * 304.71452 * 1 2 3 31 31 H 1.09001 * 109.46425 * 64.71264 * 1 2 3 32 32 H 1.09003 * 109.47706 * 184.71004 * 1 2 3 33 33 H 0.97001 * 120.00267 * 359.97438 * 7 5 3 34 34 H 1.09002 * 109.83392 * 339.92037 * 10 8 7 35 35 H 1.08995 * 109.83387 * 100.90106 * 10 8 7 36 36 H 1.08998 * 113.81771 * 333.16492 * 13 12 11 37 37 H 1.09000 * 113.82214 * 104.72240 * 13 12 11 38 38 H 0.96994 * 120.00345 * 179.97438 * 18 17 15 39 39 H 1.08994 * 113.82548 * 221.86106 * 23 14 13 40 40 H 1.09003 * 113.92987 * 90.30822 * 23 14 13 41 41 H 1.09002 * 111.15232 * 206.95775 * 24 12 11 42 42 H 1.09001 * 111.15231 * 82.72378 * 24 12 11 43 43 H 1.09007 * 110.81562 * 187.66682 * 25 3 2 44 44 H 1.09005 * 110.48167 * 37.57802 * 26 25 3 45 45 H 1.09002 * 110.48211 * 274.93887 * 26 25 3 46 46 H 1.09000 * 110.02908 * 217.10614 * 27 26 25 47 47 H 1.08998 * 110.03244 * 95.68091 * 27 26 25 48 48 H 1.09001 * 110.02998 * 119.28959 * 28 27 26 49 49 H 1.09008 * 110.03102 * 240.71686 * 28 27 26 50 50 H 1.09002 * 110.48539 * 142.28539 * 29 28 27 51 51 H 1.08994 * 110.49300 * 264.92936 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3518 1.9963 -0.5264 5 6 2.1962 1.7725 1.4207 6 8 1.9487 1.0240 2.3424 7 7 2.6373 3.0220 1.6669 8 6 2.8185 3.4759 3.0480 9 1 3.1950 2.6668 3.6739 10 6 1.4990 4.0423 3.6175 11 8 1.8247 5.2087 4.3877 12 6 3.2344 5.4188 4.3660 13 6 3.9850 5.0913 5.6578 14 7 4.7935 6.2930 5.3648 15 6 6.0501 6.7109 5.7133 16 1 6.4214 7.6607 5.3576 17 6 6.8466 5.9140 6.5241 18 7 6.3943 4.7565 6.9575 19 14 8.5605 6.4845 7.0002 20 1 8.4897 7.2656 8.2612 21 1 9.4382 5.3031 7.1982 22 1 9.1159 7.3384 5.9196 23 6 3.7045 6.8632 4.5447 24 6 3.7627 4.7098 3.1050 25 6 3.3682 1.2590 -0.7033 26 6 4.2305 0.0945 -0.1560 27 6 5.2221 -0.2110 -1.2975 28 6 4.5669 0.2928 -2.5955 29 6 3.1998 0.8862 -2.1975 30 1 -0.3634 0.5852 0.8447 31 1 -0.3632 0.4390 -0.9292 32 1 -0.3634 -1.0242 0.0844 33 1 2.8355 3.6205 0.9298 34 1 0.8300 4.3134 2.8008 35 1 1.0225 3.2986 4.2562 36 1 3.3743 5.1800 6.5563 37 1 4.5495 4.1598 5.6149 38 1 6.9510 4.1994 7.5237 39 1 4.0471 7.3319 3.6222 40 1 3.0082 7.4864 5.1059 41 1 4.8015 4.4049 3.2312 42 1 3.6435 5.3375 2.2218 43 1 3.8914 2.2095 -0.5986 44 1 3.6082 -0.7759 0.0520 45 1 4.7656 0.4052 0.7413 46 1 5.3991 -1.2846 -1.3609 47 1 6.1621 0.3134 -1.1259 48 1 5.1890 1.0616 -3.0538 49 1 4.4260 -0.5365 -3.2888 50 1 2.9827 1.7751 -2.7899 51 1 2.4114 0.1435 -2.3195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673576174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:48 Heat of formation + Delta-G solvation = -75.064955 kcal Electronic energy + Delta-G solvation = -30757.357226 eV Core-core repulsion = 26658.451385 eV Total energy + Delta-G solvation = -4098.905841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.64789 -39.73314 -38.18521 -37.06093 -36.19699 -34.51525 -32.09705 -31.57745 -29.86744 -28.90193 -28.10650 -26.86933 -25.85951 -25.60016 -24.93248 -22.09188 -21.73219 -20.87388 -20.52715 -20.07489 -18.74401 -17.74842 -17.00008 -16.76736 -16.53947 -16.05821 -15.69276 -15.37649 -15.12802 -14.90374 -14.66802 -14.31508 -14.29188 -13.75591 -13.73703 -13.54815 -13.29250 -13.04064 -12.87752 -12.59993 -11.98509 -11.89446 -11.65132 -11.60488 -11.44038 -11.41232 -11.27903 -11.12449 -10.97276 -10.93198 -10.84931 -10.82685 -10.76235 -10.68768 -10.53724 -10.31128 -10.01645 -9.57702 -9.38738 -9.09664 -8.82334 -8.75574 -6.92894 -5.79169 -3.12628 2.47843 2.88533 3.38015 3.42455 3.45039 3.50192 4.16161 4.22818 4.30627 4.44031 4.49129 4.54674 4.71766 4.77896 4.96121 5.07088 5.12472 5.15094 5.20503 5.21623 5.24935 5.29493 5.33304 5.35567 5.39569 5.42287 5.47286 5.51069 5.53682 5.62064 5.74466 5.89876 5.90272 5.96284 6.02763 6.11601 6.13205 6.26013 6.29316 6.35059 6.44556 6.57288 6.67808 6.74411 7.01969 7.20642 7.39373 7.49393 7.69086 7.93978 8.12940 9.01219 9.67313 10.54926 11.37803 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002825 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.003532 B = 9907.830536 C =11191.480810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.082 3.918 4 H 0.086 0.914 5 C 0.490 3.510 6 O -0.519 6.519 7 N -0.716 5.716 8 C 0.113 3.887 9 H 0.106 0.894 10 C 0.047 3.953 11 O -0.369 6.369 12 C 0.056 3.944 13 C 0.157 3.843 14 N -0.604 5.604 15 C -0.223 4.223 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.130 3.870 24 C -0.120 4.120 25 C -0.088 4.088 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.116 4.116 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 -7.971 -21.176 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.021 3.979 4 H 0.103 0.897 5 C 0.275 3.725 6 O -0.394 6.394 7 N -0.371 5.371 8 C 0.008 3.992 9 H 0.124 0.876 10 C -0.032 4.032 11 O -0.287 6.287 12 C 0.015 3.985 13 C 0.031 3.969 14 N -0.333 5.333 15 C -0.351 4.351 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.003 3.997 24 C -0.158 4.158 25 C -0.107 4.107 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.153 4.153 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.832 -8.632 -20.241 24.102 hybrid contribution 0.843 0.760 0.085 1.139 sum -8.989 -7.872 -20.157 23.432 Atomic orbital electron populations 1.22859 0.80775 1.03302 0.99862 1.87987 1.19804 1.24672 1.94317 1.21943 0.96951 0.86908 0.92143 0.89663 1.21382 0.77206 0.81670 0.92243 1.90735 1.48880 1.53903 1.45858 1.46011 1.68146 1.14421 1.08505 1.22637 0.95689 0.98042 0.82866 0.87626 1.23435 0.96252 0.88304 0.95185 1.88308 1.23795 1.44619 1.71938 1.24193 0.79129 0.98318 0.96842 1.22551 0.89414 0.93260 0.91636 1.45720 1.10491 1.19367 1.57703 1.18967 0.87416 1.02765 1.25935 0.90069 1.24801 0.98725 0.96925 0.99833 1.69817 1.36650 1.11549 1.38492 0.86116 0.83702 0.77450 0.78450 1.21562 1.21593 1.20583 1.22546 0.89745 0.92437 0.94933 1.22955 1.00754 0.94431 0.97692 1.22280 0.92493 1.00522 0.95370 1.22337 0.96962 0.98449 0.97688 1.22126 0.98617 1.01060 0.94437 1.22102 0.96081 1.00246 0.97616 1.22386 0.98123 1.00758 0.94075 0.93630 0.94054 0.89264 0.76561 0.91943 0.91217 0.94698 0.90590 0.93515 0.93318 0.93905 0.88232 0.90525 0.88967 0.89970 0.91656 0.91855 0.91862 0.91892 0.91889 0.91667 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.79 101.05 1.09 1.33 16 2 O -0.35 -3.82 8.04 -55.09 -0.44 -4.26 16 3 C 0.08 0.78 2.28 -27.89 -0.06 0.72 16 4 H 0.09 0.59 7.84 -51.93 -0.41 0.19 16 5 C 0.49 6.20 6.78 -10.98 -0.07 6.13 16 6 O -0.52 -8.87 16.24 -14.30 -0.23 -9.10 16 7 N -0.72 -8.17 5.04 -51.79 -0.26 -8.43 16 8 C 0.11 1.66 3.29 -65.84 -0.22 1.44 16 9 H 0.11 1.82 7.71 -51.93 -0.40 1.42 16 10 C 0.05 0.72 7.57 37.93 0.29 1.00 16 11 O -0.37 -6.85 11.17 -35.23 -0.39 -7.25 16 12 C 0.06 1.08 1.48 -90.30 -0.13 0.95 16 13 C 0.16 3.80 6.99 -3.37 -0.02 3.78 16 14 N -0.60 -15.45 3.69 -183.20 -0.68 -16.13 16 15 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 16 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -27.14 11.40 55.49 0.63 -26.51 16 19 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.13 2.70 8.49 -3.38 -0.03 2.68 16 24 C -0.12 -1.92 6.02 -24.89 -0.15 -2.07 16 25 C -0.09 -0.74 2.72 -88.62 -0.24 -0.98 16 26 C -0.12 -1.19 5.90 -25.07 -0.15 -1.34 16 27 C -0.12 -1.06 6.80 -25.62 -0.17 -1.23 16 28 C -0.12 -0.88 6.80 -25.62 -0.17 -1.05 16 29 C -0.12 -0.81 6.24 -25.06 -0.16 -0.97 16 30 H 0.04 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.34 8.25 -40.82 -0.34 3.00 16 34 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.99 7.16 -51.93 -0.37 1.62 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.80 8.05 -51.93 -0.42 1.38 16 42 H 0.08 1.03 7.98 -51.93 -0.41 0.61 16 43 H 0.09 0.69 7.82 -51.93 -0.41 0.28 16 44 H 0.08 0.96 7.00 -51.93 -0.36 0.60 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 LS Contribution 404.10 15.07 6.09 6.09 Total: -1.00 -33.36 404.10 -9.74 -43.10 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.97 Total: 1.80 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.46 Total: 3.75 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.30 Total: -51.07 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.07 Total: -20.61 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.36 -9.74 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673576174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.965 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds