Wall clock time and date at job start Tue Mar 31 2020 21:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00491 * 2 1 4 4 H 1.09003 * 109.46711 * 329.18638 * 3 2 1 5 5 C 1.50701 * 109.47005 * 89.18391 * 3 2 1 6 6 O 1.21278 * 120.00045 * 5.00115 * 5 3 2 7 7 N 1.34778 * 119.99733 * 185.00515 * 5 3 2 8 8 C 1.46504 * 120.00014 * 180.02562 * 7 5 3 9 9 H 1.09004 * 110.73383 * 36.95565 * 8 7 5 10 10 C 1.54470 * 110.82174 * 273.54378 * 8 7 5 11 11 O 1.43519 * 107.57681 * 220.41176 * 10 8 7 12 12 C 1.42546 * 109.63561 * 359.36349 * 11 10 8 13 13 C 1.52955 * 116.16027 * 253.33674 * 12 11 10 14 14 N 1.47765 * 85.80553 * 218.94420 * 13 12 11 15 15 C 1.36940 * 134.41033 * 203.94602 * 14 13 12 16 16 H 1.08007 * 120.00216 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99812 * 359.96222 * 15 14 13 18 18 N 1.31616 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46788 * 90.00169 * 19 17 15 21 21 H 1.48500 * 109.46781 * 210.00224 * 19 17 15 22 22 H 1.48498 * 109.46990 * 330.00557 * 19 17 15 23 23 C 1.47770 * 91.18583 * 23.91810 * 14 13 12 24 24 C 1.54006 * 106.48788 * 23.03779 * 12 11 10 25 25 C 1.52995 * 109.47261 * 209.18380 * 3 2 1 26 26 C 1.54889 * 110.76017 * 311.00629 * 25 3 2 27 27 C 1.54261 * 104.19430 * 156.25604 * 26 25 3 28 28 C 1.53872 * 106.60115 * 336.39074 * 27 26 25 29 29 C 1.54259 * 106.59863 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47237 * 304.71452 * 1 2 3 31 31 H 1.09001 * 109.46425 * 64.71264 * 1 2 3 32 32 H 1.09003 * 109.47706 * 184.71004 * 1 2 3 33 33 H 0.97001 * 120.00267 * 359.97438 * 7 5 3 34 34 H 1.09002 * 109.83392 * 339.92037 * 10 8 7 35 35 H 1.08995 * 109.83387 * 100.90106 * 10 8 7 36 36 H 1.08998 * 113.81771 * 333.16492 * 13 12 11 37 37 H 1.09000 * 113.82214 * 104.72240 * 13 12 11 38 38 H 0.96994 * 120.00345 * 179.97438 * 18 17 15 39 39 H 1.08994 * 113.82548 * 221.86106 * 23 14 13 40 40 H 1.09003 * 113.92987 * 90.30822 * 23 14 13 41 41 H 1.09002 * 111.15232 * 206.95775 * 24 12 11 42 42 H 1.09001 * 111.15231 * 82.72378 * 24 12 11 43 43 H 1.09007 * 110.81562 * 187.66682 * 25 3 2 44 44 H 1.09005 * 110.48167 * 37.57802 * 26 25 3 45 45 H 1.09002 * 110.48211 * 274.93887 * 26 25 3 46 46 H 1.09000 * 110.02908 * 217.10614 * 27 26 25 47 47 H 1.08998 * 110.03244 * 95.68091 * 27 26 25 48 48 H 1.09001 * 110.02998 * 119.28959 * 28 27 26 49 49 H 1.09008 * 110.03102 * 240.71686 * 28 27 26 50 50 H 1.09002 * 110.48539 * 142.28539 * 29 28 27 51 51 H 1.08994 * 110.49300 * 264.92936 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3518 1.9963 -0.5264 5 6 2.1962 1.7725 1.4207 6 8 1.9487 1.0240 2.3424 7 7 2.6373 3.0220 1.6669 8 6 2.8185 3.4759 3.0480 9 1 3.1950 2.6668 3.6739 10 6 1.4990 4.0423 3.6175 11 8 1.8247 5.2087 4.3877 12 6 3.2344 5.4188 4.3660 13 6 3.9850 5.0913 5.6578 14 7 4.7935 6.2930 5.3648 15 6 6.0501 6.7109 5.7133 16 1 6.4214 7.6607 5.3576 17 6 6.8466 5.9140 6.5241 18 7 6.3943 4.7565 6.9575 19 14 8.5605 6.4845 7.0002 20 1 8.4897 7.2656 8.2612 21 1 9.4382 5.3031 7.1982 22 1 9.1159 7.3384 5.9196 23 6 3.7045 6.8632 4.5447 24 6 3.7627 4.7098 3.1050 25 6 3.3682 1.2590 -0.7033 26 6 4.2305 0.0945 -0.1560 27 6 5.2221 -0.2110 -1.2975 28 6 4.5669 0.2928 -2.5955 29 6 3.1998 0.8862 -2.1975 30 1 -0.3634 0.5852 0.8447 31 1 -0.3632 0.4390 -0.9292 32 1 -0.3634 -1.0242 0.0844 33 1 2.8355 3.6205 0.9298 34 1 0.8300 4.3134 2.8008 35 1 1.0225 3.2986 4.2562 36 1 3.3743 5.1800 6.5563 37 1 4.5495 4.1598 5.6149 38 1 6.9510 4.1994 7.5237 39 1 4.0471 7.3319 3.6222 40 1 3.0082 7.4864 5.1059 41 1 4.8015 4.4049 3.2312 42 1 3.6435 5.3375 2.2218 43 1 3.8914 2.2095 -0.5986 44 1 3.6082 -0.7759 0.0520 45 1 4.7656 0.4052 0.7413 46 1 5.3991 -1.2846 -1.3609 47 1 6.1621 0.3134 -1.1259 48 1 5.1890 1.0616 -3.0538 49 1 4.4260 -0.5365 -3.2888 50 1 2.9827 1.7751 -2.7899 51 1 2.4114 0.1435 -2.3195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673576174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:47 Heat of formation + Delta-G solvation = -97.297974 kcal Electronic energy + Delta-G solvation = -30758.321322 eV Core-core repulsion = 26658.451385 eV Total energy + Delta-G solvation = -4099.869937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.80256 -41.00302 -39.12166 -37.97986 -37.63617 -35.74023 -34.14991 -32.51456 -30.99784 -29.82132 -29.54262 -27.54725 -27.50583 -26.76461 -26.41792 -23.92394 -22.87695 -21.94138 -21.11675 -20.92651 -20.34080 -18.81229 -18.63210 -17.94289 -17.49357 -17.20133 -16.84858 -16.57091 -16.47935 -16.28772 -15.90627 -15.58719 -15.38387 -15.13692 -14.78167 -14.47963 -14.36899 -14.19771 -14.05405 -13.77095 -13.67690 -13.38939 -12.89406 -12.84223 -12.70328 -12.62084 -12.53040 -12.37438 -12.28922 -12.08848 -11.99557 -11.92962 -11.78767 -11.69637 -11.52308 -11.50535 -11.44438 -11.19185 -10.89144 -10.37926 -10.30595 -10.20119 -8.99237 -7.92384 -5.27980 1.45781 1.48070 1.49085 1.56911 1.90664 2.42943 2.76580 2.84200 3.18103 3.33138 3.45821 3.53376 3.61327 3.69712 3.71942 3.79933 3.91162 4.01774 4.06251 4.12465 4.32734 4.49681 4.54031 4.58918 4.62315 4.65540 4.66910 4.70524 4.74103 4.78015 4.80231 4.85414 4.86840 4.89346 4.92095 5.01234 5.02578 5.12670 5.15131 5.19585 5.28387 5.36935 5.37283 5.47428 5.49761 5.55663 5.84890 6.02946 6.14037 6.50564 6.86852 7.18075 7.57151 8.50427 9.24572 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002825 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.003532 B = 9907.830536 C =11191.480810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.088 3.912 4 H 0.124 0.876 5 C 0.488 3.512 6 O -0.571 6.571 7 N -0.699 5.699 8 C 0.125 3.875 9 H 0.071 0.929 10 C 0.046 3.954 11 O -0.378 6.378 12 C 0.077 3.923 13 C 0.149 3.851 14 N -0.628 5.628 15 C -0.232 4.232 16 H 0.093 0.907 17 C -0.067 4.067 18 N -0.955 5.955 19 Si 0.981 3.019 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.261 1.261 23 C 0.132 3.868 24 C -0.107 4.107 25 C -0.086 4.086 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.108 4.108 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.420 0.580 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.006 0.994 37 H 0.045 0.955 38 H 0.248 0.752 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.060 0.940 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 -6.202 -24.941 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.027 3.973 4 H 0.141 0.859 5 C 0.275 3.725 6 O -0.449 6.449 7 N -0.355 5.355 8 C 0.018 3.982 9 H 0.089 0.911 10 C -0.031 4.031 11 O -0.296 6.296 12 C 0.036 3.964 13 C 0.023 3.977 14 N -0.357 5.357 15 C -0.360 4.360 16 H 0.110 0.890 17 C -0.260 4.260 18 N -0.604 5.604 19 Si 0.809 3.191 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.186 1.186 23 C 0.007 3.993 24 C -0.145 4.145 25 C -0.104 4.104 26 C -0.159 4.159 27 C -0.162 4.162 28 C -0.158 4.158 29 C -0.146 4.146 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.259 0.741 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.339 -6.817 -24.069 27.068 hybrid contribution 0.913 0.166 1.302 1.599 sum -9.426 -6.651 -22.766 25.522 Atomic orbital electron populations 1.23005 0.79659 1.03808 1.00742 1.87979 1.21182 1.25642 1.94193 1.22084 0.98263 0.87188 0.89814 0.85874 1.22156 0.75841 0.81170 0.93345 1.90721 1.51141 1.55282 1.47748 1.45792 1.67515 1.14604 1.07563 1.22206 0.95005 0.96561 0.84390 0.91076 1.23578 0.96780 0.87182 0.95610 1.88290 1.22760 1.45732 1.72841 1.23726 0.79664 0.97419 0.95599 1.22441 0.89749 0.92008 0.93492 1.46026 1.10987 1.20383 1.58284 1.19431 0.88459 1.02893 1.25219 0.88972 1.25691 1.02752 0.97151 1.00419 1.70035 1.37922 1.12887 1.39506 0.85037 0.78956 0.76786 0.78300 1.21607 1.22265 1.18552 1.22685 0.88231 0.93160 0.95241 1.22841 0.99311 0.94932 0.97407 1.22355 0.91530 1.00264 0.96281 1.22298 0.97358 0.98695 0.97555 1.22127 0.98284 1.01072 0.94762 1.22110 0.96276 1.00815 0.96647 1.22363 0.97756 1.01663 0.92795 0.95006 0.91099 0.88814 0.74118 0.88646 0.92224 0.97584 0.93656 0.94318 0.90187 0.93741 0.90524 0.86329 0.87404 0.92085 0.94155 0.92142 0.91899 0.90746 0.91294 0.89175 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.79 113.37 1.22 1.58 16 2 O -0.37 -7.65 8.04 -129.99 -1.04 -8.70 16 3 C 0.09 1.46 2.28 29.85 0.07 1.53 16 4 H 0.12 1.15 7.84 -2.39 -0.02 1.13 16 5 C 0.49 11.85 6.78 87.66 0.59 12.45 16 6 O -0.57 -20.01 16.24 15.97 0.26 -19.76 16 7 N -0.70 -14.48 5.04 -436.14 -2.20 -16.67 16 8 C 0.12 3.61 3.29 46.34 0.15 3.76 16 9 H 0.07 2.59 7.71 -2.38 -0.02 2.57 16 10 C 0.05 1.36 7.57 72.48 0.55 1.91 16 11 O -0.38 -13.67 11.17 -148.98 -1.66 -15.33 16 12 C 0.08 2.95 1.48 -10.43 -0.02 2.94 16 13 C 0.15 7.56 6.99 86.12 0.60 8.16 16 14 N -0.63 -32.46 3.69 -739.66 -2.73 -35.19 16 15 C -0.23 -12.91 10.70 84.03 0.90 -12.01 16 16 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 17 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 18 N -0.95 -58.77 11.40 21.65 0.25 -58.53 16 19 Si 0.98 45.66 29.55 68.60 2.03 47.68 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.13 5.31 8.49 86.12 0.73 6.04 16 24 C -0.11 -3.26 6.02 31.78 0.19 -3.07 16 25 C -0.09 -1.24 2.72 -9.49 -0.03 -1.26 16 26 C -0.12 -2.48 5.90 31.67 0.19 -2.29 16 27 C -0.12 -2.01 6.80 31.32 0.21 -1.80 16 28 C -0.12 -1.40 6.80 31.32 0.21 -1.19 16 29 C -0.11 -1.14 6.24 31.68 0.20 -0.94 16 30 H 0.03 0.56 8.10 -2.39 -0.02 0.54 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 5.32 8.25 -92.71 -0.77 4.55 16 34 H 0.10 2.24 8.02 -2.39 -0.02 2.22 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.05 2.54 7.16 -2.39 -0.02 2.52 16 38 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 42 H 0.12 2.65 7.98 -2.39 -0.02 2.63 16 43 H 0.11 1.23 7.82 -2.38 -0.02 1.21 16 44 H 0.06 1.49 7.00 -2.38 -0.02 1.47 16 45 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.07 0.84 7.57 -2.39 -0.02 0.82 16 Total: -1.00 -76.99 404.10 1.29 -75.70 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.14 Total: 18.38 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.25 Total: 12.42 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.68 Total: -110.39 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -2.45 Total: -43.79 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.99 1.29 -75.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673576174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.603 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds