Wall clock time and date at job start Tue Mar 31 2020 21:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99997 * 2 1 4 4 H 1.09000 * 109.47041 * 328.53179 * 3 2 1 5 5 C 1.50704 * 109.46852 * 88.52975 * 3 2 1 6 6 O 1.21273 * 120.00433 * 5.00295 * 5 3 2 7 7 N 1.34786 * 119.99623 * 185.00003 * 5 3 2 8 8 C 1.46493 * 119.99743 * 180.02562 * 7 5 3 9 9 H 1.08999 * 110.93301 * 328.64815 * 8 7 5 10 10 C 1.55306 * 111.00034 * 92.36788 * 8 7 5 11 11 O 1.44571 * 103.72157 * 154.59479 * 10 8 7 12 12 C 1.42966 * 106.77062 * 320.83357 * 11 10 8 13 13 C 1.53223 * 115.36449 * 156.24090 * 12 11 10 14 14 N 1.47721 * 85.89650 * 93.48061 * 13 12 11 15 15 C 1.36936 * 134.43075 * 204.09248 * 14 13 12 16 16 H 1.08002 * 120.00209 * 173.05775 * 15 14 13 17 17 C 1.38818 * 119.99914 * 353.06242 * 15 14 13 18 18 N 1.31611 * 120.00014 * 5.09910 * 17 15 14 19 19 Si 1.86797 * 119.99940 * 185.09943 * 17 15 14 20 20 H 1.48495 * 109.47159 * 94.98463 * 19 17 15 21 21 H 1.48498 * 109.47384 * 214.98416 * 19 17 15 22 22 H 1.48498 * 109.47214 * 334.98123 * 19 17 15 23 23 C 1.47714 * 91.13769 * 24.11856 * 14 13 12 24 24 C 1.53436 * 108.17140 * 25.82904 * 12 11 10 25 25 C 1.52992 * 109.47361 * 208.53098 * 3 2 1 26 26 C 1.54261 * 110.03543 * 171.30289 * 25 3 2 27 27 C 1.54891 * 104.20113 * 217.10849 * 26 25 3 28 28 C 1.54886 * 102.74622 * 37.93704 * 27 26 25 29 29 C 1.53872 * 110.03204 * 54.13576 * 25 3 2 30 30 H 1.08995 * 109.46788 * 64.86572 * 1 2 3 31 31 H 1.09004 * 109.46791 * 184.86721 * 1 2 3 32 32 H 1.09003 * 109.47026 * 304.86031 * 1 2 3 33 33 H 0.96999 * 119.99748 * 0.02562 * 7 5 3 34 34 H 1.09002 * 110.48281 * 36.05772 * 10 8 7 35 35 H 1.09011 * 110.74703 * 273.25384 * 10 8 7 36 36 H 1.09000 * 113.80180 * 207.72672 * 13 12 11 37 37 H 1.08993 * 113.80063 * 339.23490 * 13 12 11 38 38 H 0.96998 * 120.00199 * 179.97438 * 18 17 15 39 39 H 1.08996 * 113.80714 * 221.63771 * 23 14 13 40 40 H 1.08999 * 113.80723 * 90.12456 * 23 14 13 41 41 H 1.08998 * 110.55435 * 116.90881 * 24 12 11 42 42 H 1.09002 * 110.55144 * 239.58191 * 24 12 11 43 43 H 1.09002 * 110.02016 * 292.74991 * 25 3 2 44 44 H 1.09002 * 110.48508 * 335.78350 * 26 25 3 45 45 H 1.09004 * 110.48999 * 98.42697 * 26 25 3 46 46 H 1.09001 * 110.75266 * 279.62849 * 27 26 25 47 47 H 1.08991 * 110.91797 * 156.33035 * 27 26 25 48 48 H 1.09003 * 110.49068 * 203.38306 * 28 27 26 49 49 H 1.09003 * 110.59809 * 80.79889 * 28 27 26 50 50 H 1.09003 * 110.03839 * 238.56944 * 29 25 3 51 51 H 1.09000 * 110.03353 * 0.02562 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3573 1.9938 -0.5365 5 6 2.1813 1.7791 1.4204 6 8 1.9243 1.0350 2.3429 7 7 2.6198 3.0298 1.6655 8 6 2.7866 3.4901 3.0462 9 1 2.0615 3.0135 3.7058 10 6 4.2359 3.2399 3.5451 11 8 4.4193 4.2342 4.5785 12 6 3.7841 5.4294 4.1183 13 6 3.3528 6.4079 5.2158 14 7 4.6597 7.0615 4.9990 15 6 5.4769 7.8484 5.7659 16 1 6.4589 8.1187 5.4065 17 6 5.0433 8.2986 7.0054 18 7 3.8894 7.8886 7.4876 19 14 6.0974 9.4865 7.9887 20 1 5.6538 10.8785 7.7230 21 1 5.9573 9.1904 9.4371 22 1 7.5192 9.3350 7.5878 23 6 4.7320 6.5271 3.6238 24 6 2.6786 5.0340 3.1304 25 6 3.3754 1.2559 -0.6889 26 6 3.9174 2.6859 -0.8913 27 6 4.6282 2.6318 -2.2665 28 6 3.6987 1.7112 -3.0956 29 6 3.2364 0.6361 -2.0904 30 1 -0.3633 0.4365 -0.9303 31 1 -0.3633 -1.0240 0.0872 32 1 -0.3633 0.5874 0.8433 33 1 2.8250 3.6251 0.9276 34 1 4.9497 3.3923 2.7354 35 1 4.3344 2.2357 3.9575 36 1 2.4997 7.0284 4.9416 37 1 3.2484 5.9483 6.1986 38 1 3.5865 8.2029 8.3539 39 1 5.7204 6.1621 3.3450 40 1 4.2916 7.1833 2.8731 41 1 1.7011 5.3290 3.5119 42 1 2.8590 5.4840 2.1542 43 1 4.0746 0.6721 -0.0903 44 1 3.0983 3.4048 -0.9134 45 1 4.6278 2.9397 -0.1045 46 1 5.6213 2.1928 -2.1709 47 1 4.6875 3.6242 -2.7132 48 1 4.2494 1.2534 -3.9174 49 1 2.8440 2.2710 -3.4755 50 1 3.8687 -0.2480 -2.1722 51 1 2.1962 0.3710 -2.2799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673576175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:52 Heat of formation + Delta-G solvation = -70.848141 kcal Electronic energy + Delta-G solvation = -30733.123434 eV Core-core repulsion = 26634.400448 eV Total energy + Delta-G solvation = -4098.722986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.79441 -39.73366 -38.25790 -37.31053 -36.09115 -34.49174 -32.08294 -31.62631 -30.06187 -29.05466 -28.06884 -27.02273 -25.76195 -25.50941 -24.94904 -22.32791 -21.48598 -21.04746 -20.61927 -20.20636 -19.05119 -18.04646 -17.04567 -16.71261 -16.40526 -16.19680 -15.69449 -15.38697 -15.01988 -14.79980 -14.68308 -14.57220 -14.41939 -13.92690 -13.76137 -13.60585 -13.28205 -13.17427 -12.92694 -12.64117 -11.97761 -11.83439 -11.74537 -11.73461 -11.55278 -11.50660 -11.45271 -11.38683 -11.21890 -11.09086 -11.05669 -10.82410 -10.80281 -10.74056 -10.43619 -10.22374 -9.77933 -9.58861 -9.45672 -9.14762 -8.84035 -8.76997 -6.84581 -5.74465 -3.05265 2.38772 2.81240 3.37009 3.41989 3.46672 3.49354 4.11900 4.16401 4.26969 4.36582 4.47329 4.51975 4.59766 4.73119 4.82367 4.96459 4.99985 5.01713 5.02321 5.13092 5.14488 5.19363 5.23962 5.29844 5.31495 5.35776 5.40246 5.42178 5.47980 5.58719 5.62588 5.73024 5.79671 5.80323 5.90271 5.95360 5.95762 5.96959 6.10839 6.28591 6.33861 6.55061 6.62320 6.67641 6.91849 7.22157 7.31701 7.52454 7.72474 8.01142 8.04644 9.07349 9.73797 10.61944 11.43737 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020938 B = 0.002430 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.932106 B =11519.059533 C =12418.122069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.081 3.919 4 H 0.085 0.915 5 C 0.489 3.511 6 O -0.522 6.522 7 N -0.717 5.717 8 C 0.109 3.891 9 H 0.106 0.894 10 C 0.037 3.963 11 O -0.330 6.330 12 C 0.057 3.943 13 C 0.175 3.825 14 N -0.604 5.604 15 C -0.221 4.221 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.105 3.895 24 C -0.145 4.145 25 C -0.084 4.084 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.128 4.128 29 C -0.112 4.112 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.400 0.600 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 -13.523 -23.700 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.020 3.980 4 H 0.103 0.897 5 C 0.274 3.726 6 O -0.397 6.397 7 N -0.373 5.373 8 C 0.004 3.996 9 H 0.124 0.876 10 C -0.041 4.041 11 O -0.247 6.247 12 C 0.016 3.984 13 C 0.049 3.951 14 N -0.330 5.330 15 C -0.349 4.349 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.021 4.021 24 C -0.184 4.184 25 C -0.103 4.103 26 C -0.166 4.166 27 C -0.160 4.160 28 C -0.165 4.165 29 C -0.150 4.150 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.670 -14.094 -22.507 27.154 hybrid contribution 0.235 1.288 0.095 1.312 sum -5.435 -12.806 -22.412 26.379 Atomic orbital electron populations 1.22867 0.80581 1.03386 0.99928 1.87989 1.20046 1.24825 1.94314 1.22196 0.96840 0.86860 0.92140 0.89687 1.21438 0.77064 0.81849 0.92269 1.90731 1.49018 1.54122 1.45833 1.46250 1.67999 1.14462 1.08632 1.22719 0.98724 0.95111 0.83022 0.87628 1.23933 0.94425 0.93876 0.91891 1.88955 1.76694 1.20086 1.38993 1.23819 0.91660 0.86591 0.96331 1.22306 0.88605 0.87777 0.96386 1.45757 1.19655 1.59552 1.08032 1.18986 0.95644 1.22414 0.97808 0.90227 1.24812 0.97215 1.00512 0.97848 1.69821 1.20952 1.46780 1.19079 0.86113 0.79408 0.80950 0.79414 1.21670 1.21683 1.20566 1.23010 0.97343 0.92013 0.89739 1.23058 1.01325 0.93275 1.00786 1.21814 0.93741 0.97699 0.97087 1.22582 1.00249 0.95116 0.98642 1.22462 0.98857 1.00010 0.94625 1.22420 0.99232 0.97010 0.97865 1.22090 1.02164 0.98208 0.92500 0.93987 0.89179 0.93579 0.76279 0.92491 0.89094 0.94021 0.90496 0.93615 0.93476 0.94170 0.89486 0.90372 0.89540 0.91222 0.90419 0.91126 0.91102 0.91566 0.91640 0.91324 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.78 101.05 1.09 1.32 16 2 O -0.35 -3.78 9.02 -55.09 -0.50 -4.27 16 3 C 0.08 0.73 1.93 -27.89 -0.05 0.68 16 4 H 0.09 0.58 7.68 -51.93 -0.40 0.18 16 5 C 0.49 5.85 7.04 -10.98 -0.08 5.77 16 6 O -0.52 -8.57 16.15 -14.30 -0.23 -8.81 16 7 N -0.72 -7.47 4.78 -51.61 -0.25 -7.72 16 8 C 0.11 1.46 3.52 -65.66 -0.23 1.23 16 9 H 0.11 1.60 7.55 -51.93 -0.39 1.21 16 10 C 0.04 0.57 7.43 38.38 0.29 0.85 16 11 O -0.33 -6.70 11.29 -35.23 -0.40 -7.09 16 12 C 0.06 1.10 1.53 -90.28 -0.14 0.96 16 13 C 0.17 4.18 6.80 -3.26 -0.02 4.16 16 14 N -0.60 -15.91 3.70 -181.58 -0.67 -16.58 16 15 C -0.22 -6.38 10.69 -15.06 -0.16 -6.54 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -27.86 11.53 55.49 0.64 -27.22 16 19 Si 0.91 22.57 29.56 -169.99 -5.02 17.55 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.11 2.16 8.34 -3.26 -0.03 2.13 16 24 C -0.15 -2.01 6.21 -25.45 -0.16 -2.17 16 25 C -0.08 -0.64 2.69 -89.51 -0.24 -0.88 16 26 C -0.13 -0.78 4.57 -25.07 -0.11 -0.90 16 27 C -0.12 -0.67 6.91 -24.74 -0.17 -0.84 16 28 C -0.13 -0.68 6.83 -25.07 -0.17 -0.85 16 29 C -0.11 -0.73 6.17 -25.61 -0.16 -0.89 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.40 3.11 5.58 -40.82 -0.23 2.88 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 36 H 0.04 0.98 8.10 -51.93 -0.42 0.55 16 37 H 0.08 2.10 7.40 -51.93 -0.38 1.71 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.09 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.34 6.65 -51.93 -0.35 0.00 16 45 H 0.08 0.51 7.95 -51.93 -0.41 0.10 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.47 7.22 -51.93 -0.37 0.10 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -35.46 399.71 -9.64 -45.10 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.79 Total: -0.71 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.45 Total: 3.72 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.28 Total: -51.52 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.13 Total: -20.17 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.46 -9.64 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673576175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.745 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds