Wall clock time and date at job start Tue Mar 31 2020 21:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00093 * 2 1 4 4 C 1.53002 * 109.47104 * 184.80192 * 3 2 1 5 5 C 1.50691 * 115.55078 * 295.48327 * 4 3 2 6 6 O 1.21283 * 120.00050 * 115.13005 * 5 4 3 7 7 N 1.34776 * 120.00246 * 295.12930 * 5 4 3 8 8 C 1.47160 * 120.99023 * 355.09867 * 7 5 4 9 9 C 1.53289 * 108.37689 * 230.58145 * 8 7 5 10 10 O 1.42964 * 109.23006 * 307.64806 * 9 8 7 11 11 C 1.42898 * 114.21451 * 62.48510 * 10 9 8 12 12 C 1.52988 * 109.55846 * 57.47848 * 11 10 9 13 13 C 1.53193 * 109.35161 * 59.06294 * 12 11 10 14 14 N 1.46924 * 108.77971 * 54.56274 * 13 12 11 15 15 C 1.36938 * 120.64429 * 126.30082 * 14 13 12 16 16 H 1.07999 * 119.99914 * 337.21140 * 15 14 13 17 17 C 1.38808 * 120.00137 * 157.21497 * 15 14 13 18 18 N 1.31618 * 120.00334 * 141.75640 * 17 15 14 19 19 Si 1.86797 * 119.99984 * 321.74998 * 17 15 14 20 20 H 1.48504 * 109.47245 * 270.00598 * 19 17 15 21 21 H 1.48501 * 109.46948 * 30.00311 * 19 17 15 22 22 H 1.48495 * 109.47423 * 150.00265 * 19 17 15 23 23 C 1.46936 * 118.71438 * 306.57849 * 14 13 12 24 24 C 1.52761 * 108.99798 * 53.38560 * 23 14 13 25 25 C 1.47150 * 120.99459 * 175.07927 * 7 5 4 26 26 C 1.52995 * 117.49767 * 81.15739 * 4 3 2 27 27 C 1.53005 * 117.49205 * 149.81854 * 4 3 2 28 28 H 1.09000 * 109.47123 * 184.80724 * 1 2 3 29 29 H 1.09001 * 109.47437 * 304.80483 * 1 2 3 30 30 H 1.09001 * 109.47143 * 64.80708 * 1 2 3 31 31 H 1.08995 * 109.46840 * 64.79710 * 3 2 1 32 32 H 1.09004 * 109.46904 * 304.80117 * 3 2 1 33 33 H 1.08994 * 109.68521 * 110.85442 * 8 7 5 34 34 H 1.09001 * 109.71211 * 350.31651 * 8 7 5 35 35 H 1.08998 * 109.51197 * 187.72483 * 9 8 7 36 36 H 1.08995 * 109.51522 * 67.57117 * 9 8 7 37 37 H 1.09004 * 109.49407 * 299.09372 * 12 11 10 38 38 H 1.09002 * 109.49063 * 179.02201 * 12 11 10 39 39 H 1.09004 * 109.58345 * 294.77154 * 13 12 11 40 40 H 1.09004 * 109.70175 * 174.42403 * 13 12 11 41 41 H 0.97003 * 119.99873 * 354.90271 * 18 17 15 42 42 H 1.08996 * 109.58727 * 173.21791 * 23 14 13 43 43 H 1.09000 * 109.58091 * 293.64948 * 23 14 13 44 44 H 1.09004 * 109.55237 * 185.59184 * 24 23 14 45 45 H 1.08993 * 109.37788 * 65.57189 * 24 23 14 46 46 H 1.09009 * 109.67397 * 9.80692 * 25 7 5 47 47 H 1.09000 * 109.68035 * 249.26949 * 25 7 5 48 48 H 1.09000 * 117.50047 * 214.99843 * 26 4 3 49 49 H 1.09003 * 117.50228 * 0.02562 * 26 4 3 50 50 H 1.08990 * 117.50474 * 359.97025 * 27 4 3 51 51 H 1.09000 * 117.49586 * 144.97544 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5308 1.1867 -0.1208 5 6 4.2238 0.5117 1.0346 6 8 4.7960 -0.5443 0.8654 7 7 4.2078 1.0812 2.2560 8 6 3.6136 2.4113 2.4640 9 6 4.6252 3.2795 3.2208 10 8 5.0551 2.5865 4.3950 11 6 5.7362 1.3577 4.1339 12 6 6.9502 1.6244 3.2419 13 6 7.8882 2.6119 3.9432 14 7 8.2202 2.0851 5.2740 15 6 9.5256 1.9424 5.6624 16 1 10.3038 1.8555 4.9187 17 6 9.8485 1.9091 7.0120 18 7 10.7897 1.0967 7.4437 19 14 8.9474 3.0177 8.2155 20 1 9.6663 4.3121 8.3298 21 1 7.5663 3.2601 7.7265 22 1 8.8932 2.3624 9.5469 23 6 7.1245 1.7087 6.1778 24 6 6.1951 0.7360 5.4543 25 6 4.7836 0.3915 3.4213 26 6 4.1136 0.9697 -1.5186 27 6 4.2745 2.3242 -0.8237 28 1 -0.3633 -1.0240 0.0861 29 1 -0.3634 0.5866 0.8438 30 1 -0.3633 0.4374 -0.9299 31 1 1.7582 1.8154 0.9298 32 1 1.6221 1.8760 -0.8439 33 1 2.6994 2.3175 3.0500 34 1 3.3867 2.8675 1.5004 35 1 4.1558 4.2212 3.5053 36 1 5.4845 3.4790 2.5807 37 1 6.6189 2.0481 2.2938 38 1 7.4787 0.6890 3.0578 39 1 7.3922 3.5771 4.0456 40 1 8.8007 2.7301 3.3589 41 1 11.2062 0.4688 6.8328 42 1 7.5330 1.2288 7.0671 43 1 6.5653 2.5993 6.4647 44 1 5.3267 0.5278 6.0795 45 1 6.7292 -0.1925 5.2529 46 1 5.3338 -0.4898 3.0913 47 1 3.9864 0.0932 4.1022 48 1 4.9983 0.3386 -1.6026 49 1 3.4138 0.9119 -2.3523 50 1 3.6806 3.1567 -1.2005 51 1 5.2649 2.5843 -0.4503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674275582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:26 Heat of formation + Delta-G solvation = -53.227127 kcal Electronic energy + Delta-G solvation = -32083.619569 eV Core-core repulsion = 27985.660688 eV Total energy + Delta-G solvation = -4097.958882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.00648 -39.51265 -38.03421 -36.52727 -36.37974 -34.63377 -33.07133 -31.40705 -30.33272 -28.95263 -28.81594 -27.25785 -25.98383 -24.09689 -23.76720 -22.99358 -22.78731 -22.06654 -20.68420 -19.15677 -18.88048 -17.57773 -17.32828 -16.61763 -16.47177 -16.06064 -15.81105 -15.54041 -15.50831 -14.89645 -14.76575 -14.43749 -14.21825 -14.09833 -13.85155 -13.46821 -13.28342 -13.20324 -12.92784 -12.52865 -12.34596 -12.13937 -11.97811 -11.93032 -11.87730 -11.76570 -11.57529 -11.30211 -10.98417 -10.77439 -10.68594 -10.57929 -10.40675 -10.32512 -10.07756 -9.92568 -9.69195 -9.60171 -9.56114 -9.12680 -8.48861 -8.18502 -6.95641 -6.33150 -3.12580 2.45129 2.71202 2.99681 3.57723 3.63759 3.64759 3.78487 3.86265 4.14511 4.27777 4.47423 4.57658 4.65452 4.72270 4.80854 4.84313 4.91423 4.98005 4.99006 4.99983 5.05674 5.15430 5.18735 5.20555 5.23387 5.30016 5.35870 5.47586 5.55812 5.57798 5.58810 5.71683 5.77835 5.82052 5.90994 6.13661 6.18796 6.24289 6.30206 6.39316 6.47846 6.63309 6.72526 6.80550 6.82909 7.09117 7.27263 7.42486 8.08831 8.09122 8.50154 9.09514 9.73331 10.31526 11.09589 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.003059 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.181877 B = 9150.757934 C = 9369.548847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.103 3.897 4 C -0.162 4.162 5 C 0.560 3.440 6 O -0.529 6.529 7 N -0.606 5.606 8 C 0.074 3.926 9 C 0.044 3.956 10 O -0.359 6.359 11 C 0.118 3.882 12 C -0.152 4.152 13 C 0.154 3.846 14 N -0.598 5.598 15 C -0.361 4.361 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.898 5.898 19 Si 1.009 2.991 20 H -0.300 1.300 21 H -0.266 1.266 22 H -0.294 1.294 23 C 0.152 3.848 24 C -0.123 4.123 25 C 0.090 3.910 26 C -0.133 4.133 27 C -0.153 4.153 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.054 0.946 41 H 0.266 0.734 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.371 4.026 -16.619 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.026 3.974 4 C -0.165 4.165 5 C 0.347 3.653 6 O -0.405 6.405 7 N -0.340 5.340 8 C -0.049 4.049 9 C -0.034 4.034 10 O -0.278 6.278 11 C 0.078 3.922 12 C -0.191 4.191 13 C 0.027 3.973 14 N -0.322 5.322 15 C -0.489 4.489 16 H 0.082 0.918 17 C -0.202 4.202 18 N -0.535 5.535 19 Si 0.838 3.162 20 H -0.228 1.228 21 H -0.192 1.192 22 H -0.221 1.221 23 C 0.026 3.974 24 C -0.163 4.163 25 C -0.032 4.032 26 C -0.170 4.170 27 C -0.190 4.190 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.090 0.910 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.125 0.875 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.985 3.801 -14.942 26.852 hybrid contribution -0.267 -0.214 -1.853 1.884 sum -22.251 3.587 -16.795 28.108 Atomic orbital electron populations 1.22763 0.80811 1.03050 0.99904 1.88000 1.19648 1.27034 1.95340 1.21983 0.89113 0.85436 1.00867 1.21286 0.94149 1.06236 0.94849 1.19267 0.79183 0.84513 0.82311 1.90697 1.43942 1.22586 1.83226 1.47985 1.59261 1.18767 1.07998 1.22513 0.97276 0.83520 1.01634 1.22911 0.96691 0.94987 0.88812 1.88039 1.75218 1.35455 1.29068 1.21734 0.90203 0.83829 0.96392 1.22493 0.96885 1.02222 0.97491 1.20777 0.95726 0.93299 0.87477 1.44318 1.02563 1.73070 1.12242 1.20044 0.83651 1.51994 0.93202 0.91752 1.25998 0.98645 0.99659 0.95885 1.70895 1.28531 1.17412 1.36633 0.84777 0.77265 0.77744 0.76369 1.22834 1.19176 1.22114 1.21190 0.88366 0.95129 0.92731 1.22031 0.99821 1.00193 0.94239 1.22450 0.97423 0.96870 0.86460 1.22991 1.03180 0.98306 0.92548 1.23175 1.01617 0.92223 1.02018 0.89437 0.93983 0.94026 0.92271 0.92214 0.90848 0.89096 0.88062 0.92178 0.92917 0.91182 0.96055 0.92778 0.92385 0.91729 0.94365 0.91866 0.90488 0.88265 0.90989 0.87454 0.87724 0.87473 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.15 10.62 -35.23 -0.37 -4.53 16 3 C 0.10 0.87 5.42 37.16 0.20 1.07 16 4 C -0.16 -1.65 1.03 -155.66 -0.16 -1.81 16 5 C 0.56 7.95 6.90 -10.99 -0.08 7.88 16 6 O -0.53 -9.71 16.15 5.55 0.09 -9.62 16 7 N -0.61 -7.93 2.52 -172.30 -0.43 -8.36 16 8 C 0.07 0.73 5.34 -3.53 -0.02 0.71 16 9 C 0.04 0.50 6.60 37.31 0.25 0.75 16 10 O -0.36 -5.66 9.01 -35.23 -0.32 -5.97 16 11 C 0.12 1.95 0.68 -90.50 -0.06 1.88 16 12 C -0.15 -2.69 4.33 -26.64 -0.12 -2.80 16 13 C 0.15 3.18 6.29 -3.71 -0.02 3.16 16 14 N -0.60 -14.61 2.79 -172.58 -0.48 -15.09 16 15 C -0.36 -10.26 9.74 -15.06 -0.15 -10.41 16 16 H 0.06 1.96 8.03 -52.49 -0.42 1.53 16 17 C 0.00 0.06 4.81 -17.43 -0.08 -0.03 16 18 N -0.90 -27.78 13.70 55.49 0.76 -27.02 16 19 Si 1.01 25.50 26.85 -169.99 -4.56 20.94 16 20 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 21 H -0.27 -6.22 4.70 56.52 0.27 -5.95 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 C 0.15 3.38 4.09 -3.93 -0.02 3.37 16 24 C -0.12 -2.26 5.09 -26.86 -0.14 -2.40 16 25 C 0.09 1.34 5.31 -3.55 -0.02 1.33 16 26 C -0.13 -1.23 9.78 -26.69 -0.26 -1.49 16 27 C -0.15 -1.15 9.09 -26.69 -0.24 -1.39 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.44 6.30 -51.93 -0.33 0.12 16 32 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.67 5.07 -51.93 -0.26 0.41 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.72 6.29 -51.93 -0.33 0.39 16 37 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 40 H 0.05 1.14 7.91 -51.93 -0.41 0.73 16 41 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 42 H 0.06 1.55 5.42 -51.93 -0.28 1.27 16 43 H 0.04 0.87 6.39 -51.93 -0.33 0.54 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.10 1.65 7.06 -51.92 -0.37 1.28 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.11 1.17 7.98 -51.93 -0.41 0.75 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -35.11 384.99 -7.97 -43.09 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.65 Total: -0.37 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 0.20 Total: 1.14 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.16 Total: -50.47 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.60 Total: -20.12 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.56 Total: 20.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.11 -7.97 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674275582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.141 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds