Wall clock time and date at job start Tue Mar 31 2020 21:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00093 * 2 1 4 4 C 1.53002 * 109.47104 * 184.80192 * 3 2 1 5 5 C 1.50691 * 115.55078 * 295.48327 * 4 3 2 6 6 O 1.21283 * 120.00050 * 115.13005 * 5 4 3 7 7 N 1.34776 * 120.00246 * 295.12930 * 5 4 3 8 8 C 1.47160 * 120.99023 * 355.09867 * 7 5 4 9 9 C 1.53289 * 108.37689 * 230.58145 * 8 7 5 10 10 O 1.42964 * 109.23006 * 307.64806 * 9 8 7 11 11 C 1.42898 * 114.21451 * 62.48510 * 10 9 8 12 12 C 1.52988 * 109.55846 * 57.47848 * 11 10 9 13 13 C 1.53193 * 109.35161 * 59.06294 * 12 11 10 14 14 N 1.46924 * 108.77971 * 54.56274 * 13 12 11 15 15 C 1.36938 * 120.64429 * 126.30082 * 14 13 12 16 16 H 1.07999 * 119.99914 * 337.21140 * 15 14 13 17 17 C 1.38808 * 120.00137 * 157.21497 * 15 14 13 18 18 N 1.31618 * 120.00334 * 141.75640 * 17 15 14 19 19 Si 1.86797 * 119.99984 * 321.74998 * 17 15 14 20 20 H 1.48504 * 109.47245 * 270.00598 * 19 17 15 21 21 H 1.48501 * 109.46948 * 30.00311 * 19 17 15 22 22 H 1.48495 * 109.47423 * 150.00265 * 19 17 15 23 23 C 1.46936 * 118.71438 * 306.57849 * 14 13 12 24 24 C 1.52761 * 108.99798 * 53.38560 * 23 14 13 25 25 C 1.47150 * 120.99459 * 175.07927 * 7 5 4 26 26 C 1.52995 * 117.49767 * 81.15739 * 4 3 2 27 27 C 1.53005 * 117.49205 * 149.81854 * 4 3 2 28 28 H 1.09000 * 109.47123 * 184.80724 * 1 2 3 29 29 H 1.09001 * 109.47437 * 304.80483 * 1 2 3 30 30 H 1.09001 * 109.47143 * 64.80708 * 1 2 3 31 31 H 1.08995 * 109.46840 * 64.79710 * 3 2 1 32 32 H 1.09004 * 109.46904 * 304.80117 * 3 2 1 33 33 H 1.08994 * 109.68521 * 110.85442 * 8 7 5 34 34 H 1.09001 * 109.71211 * 350.31651 * 8 7 5 35 35 H 1.08998 * 109.51197 * 187.72483 * 9 8 7 36 36 H 1.08995 * 109.51522 * 67.57117 * 9 8 7 37 37 H 1.09004 * 109.49407 * 299.09372 * 12 11 10 38 38 H 1.09002 * 109.49063 * 179.02201 * 12 11 10 39 39 H 1.09004 * 109.58345 * 294.77154 * 13 12 11 40 40 H 1.09004 * 109.70175 * 174.42403 * 13 12 11 41 41 H 0.97003 * 119.99873 * 354.90271 * 18 17 15 42 42 H 1.08996 * 109.58727 * 173.21791 * 23 14 13 43 43 H 1.09000 * 109.58091 * 293.64948 * 23 14 13 44 44 H 1.09004 * 109.55237 * 185.59184 * 24 23 14 45 45 H 1.08993 * 109.37788 * 65.57189 * 24 23 14 46 46 H 1.09009 * 109.67397 * 9.80692 * 25 7 5 47 47 H 1.09000 * 109.68035 * 249.26949 * 25 7 5 48 48 H 1.09000 * 117.50047 * 214.99843 * 26 4 3 49 49 H 1.09003 * 117.50228 * 0.02562 * 26 4 3 50 50 H 1.08990 * 117.50474 * 359.97025 * 27 4 3 51 51 H 1.09000 * 117.49586 * 144.97544 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5308 1.1867 -0.1208 5 6 4.2238 0.5117 1.0346 6 8 4.7960 -0.5443 0.8654 7 7 4.2078 1.0812 2.2560 8 6 3.6136 2.4113 2.4640 9 6 4.6252 3.2795 3.2208 10 8 5.0551 2.5865 4.3950 11 6 5.7362 1.3577 4.1339 12 6 6.9502 1.6244 3.2419 13 6 7.8882 2.6119 3.9432 14 7 8.2202 2.0851 5.2740 15 6 9.5256 1.9424 5.6624 16 1 10.3038 1.8555 4.9187 17 6 9.8485 1.9091 7.0120 18 7 10.7897 1.0967 7.4437 19 14 8.9474 3.0177 8.2155 20 1 9.6663 4.3121 8.3298 21 1 7.5663 3.2601 7.7265 22 1 8.8932 2.3624 9.5469 23 6 7.1245 1.7087 6.1778 24 6 6.1951 0.7360 5.4543 25 6 4.7836 0.3915 3.4213 26 6 4.1136 0.9697 -1.5186 27 6 4.2745 2.3242 -0.8237 28 1 -0.3633 -1.0240 0.0861 29 1 -0.3634 0.5866 0.8438 30 1 -0.3633 0.4374 -0.9299 31 1 1.7582 1.8154 0.9298 32 1 1.6221 1.8760 -0.8439 33 1 2.6994 2.3175 3.0500 34 1 3.3867 2.8675 1.5004 35 1 4.1558 4.2212 3.5053 36 1 5.4845 3.4790 2.5807 37 1 6.6189 2.0481 2.2938 38 1 7.4787 0.6890 3.0578 39 1 7.3922 3.5771 4.0456 40 1 8.8007 2.7301 3.3589 41 1 11.2062 0.4688 6.8328 42 1 7.5330 1.2288 7.0671 43 1 6.5653 2.5993 6.4647 44 1 5.3267 0.5278 6.0795 45 1 6.7292 -0.1925 5.2529 46 1 5.3338 -0.4898 3.0913 47 1 3.9864 0.0932 4.1022 48 1 4.9983 0.3386 -1.6026 49 1 3.4138 0.9119 -2.3523 50 1 3.6806 3.1567 -1.2005 51 1 5.2649 2.5843 -0.4503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674275582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:25 Heat of formation + Delta-G solvation = -78.151453 kcal Electronic energy + Delta-G solvation = -32084.700369 eV Core-core repulsion = 27985.660688 eV Total energy + Delta-G solvation = -4099.039681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.07062 -40.61156 -38.85370 -38.00727 -37.22087 -35.79837 -34.80374 -33.17671 -32.00173 -30.17527 -29.46589 -28.46644 -26.65421 -25.70713 -24.91494 -24.32029 -23.52636 -23.43854 -22.18468 -20.58751 -19.83243 -19.40516 -18.34416 -17.53301 -17.27172 -17.05203 -16.92871 -16.69775 -16.40772 -16.19930 -15.94490 -15.79163 -15.59346 -15.36398 -15.11522 -15.03117 -14.70067 -14.34665 -13.96548 -13.71982 -13.51003 -13.31616 -13.28265 -13.13030 -13.03629 -12.89789 -12.55950 -12.44434 -12.33177 -12.21497 -11.95179 -11.77756 -11.67457 -11.60302 -11.50518 -11.29057 -11.12800 -10.87940 -10.80889 -10.54494 -10.39505 -9.58329 -9.02720 -8.63274 -5.37100 1.45658 1.54297 1.57846 1.74599 1.79018 2.35452 2.60990 2.72156 2.94673 3.03361 3.33183 3.42419 3.60262 3.63460 3.71741 3.79439 3.85065 3.92755 4.03075 4.15247 4.25310 4.28561 4.31144 4.38040 4.48109 4.51767 4.53008 4.59464 4.60458 4.62836 4.66057 4.68835 4.72828 4.78671 4.83026 4.85930 4.88423 4.92345 4.93652 5.02287 5.05330 5.13615 5.16321 5.30425 5.43109 5.80927 6.19200 6.24301 6.25815 6.30585 6.90520 7.05256 7.64464 8.14806 8.78184 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.003059 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.181877 B = 9150.757934 C = 9369.548847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.421 6.421 3 C 0.103 3.897 4 C -0.175 4.175 5 C 0.551 3.449 6 O -0.586 6.586 7 N -0.605 5.605 8 C 0.075 3.925 9 C 0.035 3.965 10 O -0.373 6.373 11 C 0.131 3.869 12 C -0.139 4.139 13 C 0.155 3.845 14 N -0.613 5.613 15 C -0.354 4.354 16 H 0.027 0.973 17 C -0.050 4.050 18 N -0.933 5.933 19 Si 1.061 2.939 20 H -0.298 1.298 21 H -0.234 1.234 22 H -0.297 1.297 23 C 0.150 3.850 24 C -0.120 4.120 25 C 0.097 3.903 26 C -0.146 4.146 27 C -0.124 4.124 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.251 0.749 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.125 0.875 50 H 0.148 0.852 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.654 7.045 -17.635 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.341 6.341 3 C 0.026 3.974 4 C -0.178 4.178 5 C 0.341 3.659 6 O -0.466 6.466 7 N -0.338 5.338 8 C -0.047 4.047 9 C -0.042 4.042 10 O -0.292 6.292 11 C 0.090 3.910 12 C -0.178 4.178 13 C 0.029 3.971 14 N -0.338 5.338 15 C -0.483 4.483 16 H 0.045 0.955 17 C -0.247 4.247 18 N -0.573 5.573 19 Si 0.886 3.114 20 H -0.226 1.226 21 H -0.158 1.158 22 H -0.224 1.224 23 C 0.025 3.975 24 C -0.160 4.160 25 C -0.027 4.027 26 C -0.184 4.184 27 C -0.161 4.161 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.143 0.857 50 H 0.166 0.834 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.323 6.866 -15.987 31.554 hybrid contribution 1.091 -1.169 -1.657 2.303 sum -25.232 5.697 -17.644 31.312 Atomic orbital electron populations 1.22907 0.79149 1.03472 1.01362 1.87956 1.21645 1.28808 1.95662 1.22149 0.87357 0.84959 1.02893 1.21333 0.95407 1.07854 0.93212 1.20088 0.78429 0.84011 0.83394 1.90669 1.46457 1.25243 1.84188 1.48103 1.58719 1.19858 1.07110 1.22761 0.97071 0.81374 1.03462 1.23265 0.97116 0.96103 0.87678 1.88004 1.75026 1.34819 1.31366 1.21391 0.89894 0.84947 0.94744 1.22314 0.96860 1.00073 0.98548 1.20856 0.95917 0.94629 0.85688 1.44407 1.01620 1.73948 1.13837 1.19899 0.85042 1.50769 0.92550 0.95486 1.27128 0.99319 1.00203 0.98096 1.71015 1.30752 1.19026 1.36488 0.84097 0.77870 0.75420 0.74040 1.22571 1.15813 1.22382 1.21201 0.88133 0.96003 0.92145 1.21913 0.99868 0.98576 0.95596 1.22176 0.97344 0.95737 0.87406 1.23036 1.02721 0.99582 0.93019 1.23326 1.01277 0.92147 0.99344 0.89690 0.92789 0.92229 0.90966 0.89027 0.89050 0.85967 0.84679 0.92717 0.90867 0.93945 0.94283 0.94286 0.93984 0.93869 0.93486 0.89026 0.92121 0.90890 0.89577 0.90358 0.85654 0.83407 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.19 10.62 -148.98 -1.58 -9.77 16 3 C 0.10 1.33 5.42 71.98 0.39 1.72 16 4 C -0.17 -3.10 1.03 -52.93 -0.05 -3.16 16 5 C 0.55 15.12 6.90 87.65 0.60 15.73 16 6 O -0.59 -22.27 16.15 -3.04 -0.05 -22.32 16 7 N -0.61 -14.53 2.52 -817.43 -2.06 -16.59 16 8 C 0.07 1.13 5.34 86.35 0.46 1.59 16 9 C 0.04 0.65 6.60 72.08 0.48 1.12 16 10 O -0.37 -10.42 9.01 -148.98 -1.34 -11.76 16 11 C 0.13 4.10 0.68 -10.72 -0.01 4.09 16 12 C -0.14 -4.89 4.33 30.65 0.13 -4.75 16 13 C 0.15 6.36 6.29 86.36 0.54 6.90 16 14 N -0.61 -30.18 2.79 -699.91 -1.95 -32.13 16 15 C -0.35 -20.80 9.74 84.03 0.82 -19.98 16 16 H 0.03 1.75 8.03 -2.91 -0.02 1.73 16 17 C -0.05 -2.96 4.81 84.86 0.41 -2.55 16 18 N -0.93 -60.02 13.70 21.65 0.30 -59.73 16 19 Si 1.06 51.98 26.85 68.60 1.84 53.83 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.23 -10.15 4.70 99.48 0.47 -9.68 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 C 0.15 6.55 4.09 86.22 0.35 6.90 16 24 C -0.12 -4.30 5.09 30.51 0.16 -4.15 16 25 C 0.10 2.78 5.31 86.34 0.46 3.24 16 26 C -0.15 -2.44 9.78 30.62 0.30 -2.14 16 27 C -0.12 -1.39 9.09 30.62 0.28 -1.11 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.71 6.30 -2.39 -0.02 0.70 16 32 H 0.09 0.61 8.09 -2.38 -0.02 0.59 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.12 1.11 5.07 -2.39 -0.01 1.09 16 35 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.08 6.29 -2.39 -0.02 1.07 16 37 H 0.07 2.26 6.16 -2.38 -0.01 2.25 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.50 7.83 -2.39 -0.02 1.48 16 40 H 0.04 1.68 7.91 -2.39 -0.02 1.67 16 41 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 42 H 0.04 2.06 5.42 -2.39 -0.01 2.05 16 43 H 0.05 1.99 6.39 -2.39 -0.02 1.98 16 44 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.07 2.50 7.06 -2.38 -0.02 2.48 16 47 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.08 1.76 7.98 -2.39 -0.02 1.74 16 49 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -81.99 384.99 2.35 -79.64 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.64 Total: 13.84 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.56 Total: 5.01 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -3.72 Total: -108.45 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.97 Total: -43.85 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 1.84 Total: 53.83 kcal Total: -81.99 2.35 -79.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674275582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.484 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds