Wall clock time and date at job start Tue Mar 31 2020 22:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48501 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47274 * 300.00018 * 3 2 1 6 6 H 1.48502 * 109.46980 * 59.99750 * 3 2 1 7 7 C 1.38804 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00216 * 197.08822 * 7 2 1 9 9 N 1.36936 * 120.00364 * 17.08514 * 7 2 1 10 10 C 1.46897 * 120.69078 * 206.86557 * 9 7 2 11 11 C 1.53151 * 109.07452 * 235.34691 * 10 9 7 12 12 C 1.53182 * 109.35401 * 303.52012 * 11 10 9 13 13 C 1.52634 * 109.36734 * 59.05850 * 12 11 10 14 14 C 1.53460 * 113.69609 * 74.12998 * 13 12 11 15 15 N 1.47671 * 85.97067 * 91.16403 * 14 13 12 16 16 C 1.34776 * 134.45453 * 204.31046 * 15 14 13 17 17 O 1.21284 * 119.99863 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00350 * 359.96858 * 16 15 14 19 19 C 1.53000 * 109.47350 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47076 * 180.02562 * 19 18 16 21 21 C 1.52995 * 109.47250 * 179.97438 * 20 19 18 22 22 N 1.46495 * 109.47293 * 179.97438 * 21 20 19 23 23 C 1.34776 * 120.00119 * 180.02562 * 22 21 20 24 24 N 1.34777 * 119.99879 * 180.02562 * 23 22 21 25 25 O 1.21586 * 120.00274 * 0.02562 * 23 22 21 26 26 C 1.47671 * 91.09195 * 24.28412 * 15 14 13 27 27 C 1.47116 * 120.68512 * 26.84592 * 9 7 2 28 28 H 0.97008 * 120.00071 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.53542 * 115.47487 * 10 9 7 30 30 H 1.08996 * 109.60607 * 355.26625 * 10 9 7 31 31 H 1.08990 * 109.49072 * 63.48519 * 11 10 9 32 32 H 1.09000 * 109.49073 * 183.55917 * 11 10 9 33 33 H 1.08996 * 109.48785 * 179.02625 * 12 11 10 34 34 H 1.08997 * 109.49226 * 299.09122 * 12 11 10 35 35 H 1.08992 * 113.79278 * 205.42688 * 14 13 12 36 36 H 1.09004 * 113.79110 * 336.90398 * 14 13 12 37 37 H 1.09001 * 109.46790 * 300.00866 * 18 16 15 38 38 H 1.09003 * 109.46657 * 59.99901 * 18 16 15 39 39 H 1.09002 * 109.46771 * 299.99552 * 19 18 16 40 40 H 1.08988 * 109.47097 * 60.00082 * 19 18 16 41 41 H 1.08996 * 109.47211 * 300.00074 * 20 19 18 42 42 H 1.09003 * 109.46808 * 59.99598 * 20 19 18 43 43 H 1.08996 * 109.47477 * 300.00405 * 21 20 19 44 44 H 1.09003 * 109.46620 * 60.00379 * 21 20 19 45 45 H 0.97002 * 120.00214 * 0.02562 * 22 21 20 46 46 H 0.96994 * 120.00190 * 0.02562 * 24 23 22 47 47 H 0.97007 * 119.99635 * 180.02562 * 24 23 22 48 48 H 1.08999 * 113.79739 * 221.44348 * 26 15 14 49 49 H 1.09009 * 113.79264 * 89.97488 * 26 15 14 50 50 H 1.08998 * 109.63294 * 248.34323 * 27 9 7 51 51 H 1.08999 * 109.63466 * 8.95018 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0545 -1.2227 0.2754 9 7 1.3709 -2.3620 -0.3473 10 6 1.8300 -3.6565 0.1737 11 6 2.1129 -4.5971 -1.0014 12 6 0.8540 -4.7234 -1.8649 13 6 0.4498 -3.3430 -2.3755 14 6 1.3554 -2.8094 -3.4935 15 7 0.4050 -3.4483 -4.4259 16 6 0.4889 -3.9119 -5.6886 17 8 -0.4844 -4.4031 -6.2201 18 6 1.7918 -3.8198 -6.4402 19 6 1.6160 -4.4119 -7.8400 20 6 2.9390 -4.3189 -8.6029 21 6 2.7635 -4.9116 -10.0024 22 7 4.0301 -4.8221 -10.7330 23 6 4.1138 -5.2852 -11.9960 24 7 5.2792 -5.2032 -12.6679 25 8 3.1380 -5.7769 -12.5291 26 6 -0.6738 -3.3764 -3.4200 27 6 0.2097 -2.3375 -1.2503 28 1 -0.4851 0.8401 -0.0004 29 1 1.0567 -4.0888 0.8086 30 1 2.7413 -3.5145 0.7545 31 1 2.9273 -4.1932 -1.6026 32 1 2.3934 -5.5795 -0.6215 33 1 1.0581 -5.3788 -2.7116 34 1 0.0439 -5.1419 -1.2678 35 1 1.3748 -1.7218 -3.5622 36 1 2.3498 -3.2558 -3.5047 37 1 2.0904 -2.7748 -6.5229 38 1 2.5606 -4.3760 -5.9039 39 1 1.3173 -5.4569 -7.7576 40 1 0.8473 -3.8554 -8.3760 41 1 3.2383 -3.2741 -8.6853 42 1 3.7075 -4.8758 -8.0666 43 1 2.4644 -5.9564 -9.9197 44 1 1.9950 -4.3550 -10.5388 45 1 4.8086 -4.4295 -10.3079 46 1 6.0578 -4.8114 -12.2425 47 1 5.3393 -5.5363 -13.5770 48 1 -1.2916 -4.2731 -3.3729 49 1 -1.2581 -2.4573 -3.4668 50 1 -0.6891 -2.6129 -0.6986 51 1 0.0935 -1.3385 -1.6705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675665629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:53 Heat of formation + Delta-G solvation = -30.483412 kcal Electronic energy + Delta-G solvation = -29396.153941 eV Core-core repulsion = 25331.474052 eV Total energy + Delta-G solvation = -4064.679889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.45792 -40.11075 -38.40835 -36.31865 -35.74993 -34.21625 -33.43918 -32.90810 -30.66924 -30.06829 -29.13212 -26.09746 -25.92156 -25.41823 -23.92644 -22.31833 -21.70175 -21.32580 -20.60652 -18.94568 -18.53377 -17.82269 -17.61742 -16.84303 -16.63065 -16.42338 -15.74714 -15.51766 -15.14211 -15.10897 -14.63322 -14.48859 -14.11428 -14.03965 -13.67318 -13.42844 -13.02742 -12.94495 -12.69048 -12.55209 -12.43921 -11.92467 -11.90299 -11.73152 -11.60352 -11.43563 -11.20129 -11.04459 -10.87398 -10.81302 -10.64679 -10.52037 -10.33857 -10.22310 -10.09184 -9.98188 -9.78241 -9.54457 -9.36325 -9.34825 -8.56486 -8.37012 -6.76083 -5.87385 -3.28304 2.53998 2.83526 2.87960 3.11199 3.30475 3.39577 3.40765 4.10162 4.40598 4.43415 4.55645 4.65740 4.77909 5.02525 5.08814 5.15101 5.22455 5.32492 5.37196 5.42482 5.49297 5.52256 5.55570 5.65458 5.69175 5.75916 5.83409 5.90940 5.94064 5.99211 6.04939 6.08896 6.11547 6.15994 6.22149 6.32679 6.33674 6.47461 6.52338 6.57585 6.69811 6.79183 6.92570 7.19049 7.50142 7.57655 7.72252 8.01499 8.26825 8.34606 8.37471 9.12340 9.75871 10.32775 11.21392 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002026 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.183939 B =13818.764013 C =14556.312051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.133 4.133 12 C -0.083 4.083 13 C -0.111 4.111 14 C 0.122 3.878 15 N -0.642 5.642 16 C 0.529 3.471 17 O -0.556 6.556 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.131 4.131 21 C 0.136 3.864 22 N -0.745 5.745 23 C 0.703 3.297 24 N -0.869 5.869 25 O -0.595 6.595 26 C 0.115 3.885 27 C 0.190 3.810 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.397 0.603 46 H 0.396 0.604 47 H 0.414 0.586 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.025 0.975 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -8.109 -15.494 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.121 4.121 13 C -0.114 4.114 14 C 0.000 4.000 15 N -0.376 5.376 16 C 0.319 3.681 17 O -0.435 6.435 18 C -0.173 4.173 19 C -0.138 4.138 20 C -0.169 4.169 21 C 0.012 3.988 22 N -0.402 5.402 23 C 0.401 3.599 24 N -0.438 5.438 25 O -0.473 6.473 26 C -0.008 4.008 27 C 0.063 3.937 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.230 0.770 46 H 0.224 0.776 47 H 0.246 0.754 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.043 0.957 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.985 -8.682 -16.251 20.499 hybrid contribution 1.267 1.271 0.079 1.797 sum 10.252 -7.410 -16.173 20.532 Atomic orbital electron populations 1.70025 1.05183 1.25473 1.54058 1.25013 0.95275 0.98336 1.01042 0.86274 0.79370 0.84099 0.77347 1.20273 1.21580 1.21753 1.19210 0.92673 0.84644 1.41398 0.91526 1.44047 1.34436 1.01391 1.51393 1.20889 0.97511 0.86939 0.92890 1.22016 0.97164 0.99098 0.98938 1.21093 0.98180 0.94359 0.98418 1.22806 0.94256 0.98296 0.96015 1.23257 0.94042 0.98259 0.84433 1.50301 1.15934 1.59354 1.12053 1.20322 0.90318 0.77824 0.79666 1.90677 1.39339 1.46441 1.67008 1.21577 0.96018 1.03441 0.96309 1.21212 0.96380 1.02634 0.93575 1.21816 0.98941 1.01666 0.94460 1.21261 0.84646 1.01784 0.91141 1.45141 1.14840 1.66449 1.13733 1.16002 0.83622 0.78937 0.81370 1.43002 1.11943 1.69405 1.19410 1.90989 1.36347 1.51137 1.68787 1.23215 0.92078 1.01811 0.83658 1.20696 0.89032 0.96515 0.87444 0.93603 0.96415 0.92842 0.92414 0.93034 0.93364 0.92126 0.89315 0.90693 0.89083 0.89138 0.90800 0.90797 0.91101 0.91117 0.91321 0.91327 0.76982 0.77604 0.75402 0.90770 0.89654 0.95700 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 11.16 55.49 0.62 -23.91 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 20.40 29.59 -169.99 -5.03 15.37 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.28 9.60 -15.06 -0.14 -6.43 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.32 3.01 -172.46 -0.52 -13.83 16 10 C 0.14 2.75 6.46 -3.75 -0.02 2.72 16 11 C -0.13 -2.06 6.01 -26.56 -0.16 -2.22 16 12 C -0.08 -1.28 5.02 -26.82 -0.13 -1.41 16 13 C -0.11 -1.85 0.87 -154.43 -0.13 -1.99 16 14 C 0.12 1.87 7.59 -3.17 -0.02 1.84 16 15 N -0.64 -9.87 3.45 -180.44 -0.62 -10.49 16 16 C 0.53 8.07 8.06 -10.99 -0.09 7.98 16 17 O -0.56 -10.40 16.71 5.55 0.09 -10.30 16 18 C -0.13 -1.42 5.45 -27.88 -0.15 -1.57 16 19 C -0.10 -0.96 4.50 -26.73 -0.12 -1.08 16 20 C -0.13 -0.89 5.33 -26.73 -0.14 -1.03 16 21 C 0.14 1.13 5.67 -4.05 -0.02 1.11 16 22 N -0.75 -5.25 5.56 -65.23 -0.36 -5.62 16 23 C 0.70 6.63 8.84 -86.92 -0.77 5.86 16 24 N -0.87 -4.22 8.88 27.63 0.25 -3.98 16 25 O -0.59 -8.68 17.18 5.29 0.09 -8.59 16 26 C 0.12 1.84 7.97 -3.18 -0.03 1.81 16 27 C 0.19 4.01 4.43 -3.81 -0.02 3.99 16 28 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 31 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.44 7.97 -51.93 -0.41 1.03 16 36 H 0.07 1.05 7.38 -51.93 -0.38 0.67 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.07 0.80 8.10 -51.94 -0.42 0.38 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.40 1.55 8.49 -40.82 -0.35 1.20 16 46 H 0.40 0.64 8.84 -40.82 -0.36 0.28 16 47 H 0.41 1.71 8.93 -40.82 -0.36 1.34 16 48 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 49 H 0.09 1.37 8.09 -51.92 -0.42 0.95 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.09 2.17 5.95 -51.93 -0.31 1.86 16 LS Contribution 408.44 15.07 6.16 6.16 Total: -1.00 -33.70 408.44 -10.22 -43.92 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.85 Total: 1.74 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -2.04 Total: 9.55 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.64 Total: -57.83 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.70 -10.22 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675665629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.433 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds