Wall clock time and date at job start Tue Mar 31 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00378 * 2 1 4 4 H 1.48505 * 109.47108 * 354.89624 * 3 2 1 5 5 H 1.48505 * 109.47294 * 234.89685 * 3 2 1 6 6 H 1.48502 * 109.47280 * 114.89679 * 3 2 1 7 7 C 1.38819 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99908 * 197.72466 * 7 2 1 9 9 N 1.36935 * 119.99564 * 17.72071 * 7 2 1 10 10 C 1.47423 * 125.65256 * 28.67258 * 9 7 2 11 11 C 1.54906 * 104.83269 * 155.83113 * 10 9 7 12 12 C 1.55155 * 101.58130 * 37.01072 * 11 10 9 13 13 C 1.47019 * 125.64406 * 208.36305 * 9 7 2 14 14 H 1.09006 * 109.88309 * 300.51559 * 13 9 7 15 15 C 1.52997 * 109.88400 * 61.67963 * 13 9 7 16 16 N 1.46495 * 109.47157 * 298.53330 * 15 13 9 17 17 C 1.34782 * 120.00529 * 277.28473 * 16 15 13 18 18 O 1.21275 * 119.99591 * 5.81358 * 17 16 15 19 19 C 1.50699 * 120.00303 * 185.80936 * 17 16 15 20 20 N 1.46511 * 109.47257 * 27.08249 * 19 17 16 21 21 C 1.34775 * 119.99697 * 288.34790 * 20 19 17 22 22 N 1.34780 * 119.99161 * 182.29761 * 21 20 19 23 23 O 1.21584 * 120.00606 * 2.29519 * 21 20 19 24 24 C 1.53003 * 109.47036 * 267.08669 * 19 17 16 25 25 C 1.53003 * 109.47019 * 179.97438 * 24 19 17 26 26 C 1.53004 * 109.46779 * 60.00244 * 25 24 19 27 27 C 1.53008 * 109.46943 * 299.99391 * 26 25 24 28 28 C 1.53000 * 109.47159 * 147.08402 * 19 17 16 29 29 H 0.96993 * 120.00075 * 186.11681 * 1 2 3 30 30 H 1.09001 * 110.36264 * 274.67405 * 10 9 7 31 31 H 1.08999 * 110.36478 * 36.99582 * 10 9 7 32 32 H 1.09002 * 111.00307 * 155.08375 * 11 10 9 33 33 H 1.08999 * 111.01037 * 278.93477 * 11 10 9 34 34 H 1.09007 * 110.72156 * 82.86094 * 12 11 10 35 35 H 1.08996 * 110.72157 * 205.95297 * 12 11 10 36 36 H 1.08994 * 109.47444 * 58.53534 * 15 13 9 37 37 H 1.09003 * 109.47151 * 178.53760 * 15 13 9 38 38 H 0.97009 * 120.00095 * 97.28734 * 16 15 13 39 39 H 0.96998 * 119.99703 * 108.33801 * 20 19 17 40 40 H 0.96993 * 120.00522 * 5.00453 * 22 21 20 41 41 H 0.97003 * 119.99611 * 185.00217 * 22 21 20 42 42 H 1.08992 * 109.46720 * 299.99650 * 24 19 17 43 43 H 1.09003 * 109.47008 * 60.00067 * 24 19 17 44 44 H 1.08992 * 109.47458 * 300.00367 * 25 24 19 45 45 H 1.08992 * 109.47205 * 179.97438 * 25 24 19 46 46 H 1.09001 * 109.47006 * 180.02562 * 26 25 24 47 47 H 1.08992 * 109.47715 * 59.99564 * 26 25 24 48 48 H 1.08992 * 109.47056 * 300.00577 * 27 26 25 49 49 H 1.09003 * 109.46806 * 180.02562 * 27 26 25 50 50 H 1.09000 * 109.46944 * 300.00242 * 28 19 17 51 51 H 1.08992 * 109.46681 * 60.00169 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2901 2.7437 -0.1246 5 1 3.1951 1.6438 -1.1455 6 1 3.0083 1.7516 1.2700 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2246 0.2842 9 7 1.3742 -2.3598 -0.3620 10 6 0.2380 -2.4603 -1.2960 11 6 0.2971 -3.9102 -1.8379 12 6 0.7502 -4.6952 -0.5786 13 6 1.7154 -3.7089 0.1121 14 1 2.7451 -3.9464 -0.1552 15 6 1.5375 -3.7876 1.6297 16 7 2.4431 -2.8357 2.2776 17 6 3.7298 -3.1719 2.4969 18 8 4.1652 -4.2181 2.0649 19 6 4.6274 -2.2477 3.2787 20 7 3.8191 -1.4478 4.2024 21 6 3.0221 -0.4703 3.7273 22 7 2.3140 0.2959 4.5805 23 8 2.9419 -0.2798 2.5292 24 6 5.3680 -1.3193 2.3140 25 6 6.2788 -0.3806 3.1078 26 6 7.2937 -1.2056 3.9019 27 6 6.5530 -2.1339 4.8666 28 6 5.6421 -3.0731 4.0724 29 1 -0.4850 -0.8352 0.0895 30 1 -0.7015 -2.2897 -0.7702 31 1 0.3526 -1.7457 -2.1111 32 1 -0.6855 -4.2425 -2.1728 33 1 1.0315 -3.9986 -2.6385 34 1 -0.1018 -4.9198 0.0631 35 1 1.2703 -5.6104 -0.8610 36 1 0.5073 -3.5424 1.8880 37 1 1.7671 -4.7972 1.9706 38 1 2.1168 -1.9634 2.5489 39 1 3.8576 -1.6218 5.1559 40 1 2.4326 0.1930 5.5377 41 1 1.6857 0.9505 4.2373 42 1 5.9693 -1.9144 1.6268 43 1 4.6450 -0.7313 1.7486 44 1 5.6772 0.2144 3.7949 45 1 6.8068 0.2805 2.4207 46 1 7.9423 -0.5369 4.4678 47 1 7.8953 -1.8007 3.2150 48 1 5.9514 -1.5389 5.5535 49 1 7.2760 -2.7214 5.4326 50 1 5.1145 -3.7345 4.7596 51 1 6.2434 -3.6681 3.3851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691100336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:07 Heat of formation + Delta-G solvation = -36.723214 kcal Electronic energy + Delta-G solvation = -33684.501964 eV Core-core repulsion = 29619.551497 eV Total energy + Delta-G solvation = -4064.950467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.97152 -38.53479 -37.86346 -36.97456 -33.72450 -33.71377 -32.97105 -32.45418 -30.71300 -29.50230 -28.98288 -28.46079 -25.01654 -23.81610 -22.78244 -22.47950 -21.29478 -20.17922 -19.99828 -19.26621 -18.87661 -18.11556 -17.47516 -17.07660 -16.62599 -15.44517 -15.13799 -15.07692 -14.50506 -14.31228 -14.18764 -13.92043 -13.65757 -13.54935 -13.46535 -13.28941 -12.77411 -12.59715 -12.27359 -12.21190 -12.04446 -11.97081 -11.77722 -11.44024 -11.08555 -10.99687 -10.69798 -10.57521 -10.49239 -10.37054 -10.25659 -10.17770 -10.08722 -9.88758 -9.76909 -9.59911 -9.26651 -9.09204 -8.99096 -8.50302 -8.12289 -8.04524 -6.56174 -5.67538 -2.90090 2.94318 3.42420 3.53447 3.72817 3.81208 3.93817 4.01779 4.60040 4.77840 4.80174 4.89339 4.94778 5.21898 5.34136 5.44860 5.48450 5.51814 5.56701 5.59132 5.64625 5.66675 5.78169 5.82444 5.94063 6.02736 6.05030 6.14400 6.16248 6.21505 6.26091 6.29944 6.32912 6.37528 6.42429 6.54653 6.61934 6.66044 6.67156 6.79190 6.98015 7.14393 7.18854 7.23506 7.26021 7.43636 8.18844 8.28071 8.49809 8.89962 8.95808 9.11799 9.35422 10.17535 10.71291 11.60564 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.005995 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.105087 B = 4669.381744 C = 5946.740902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.009 4.009 3 Si 1.065 2.935 4 H -0.301 1.301 5 H -0.308 1.308 6 H -0.272 1.272 7 C -0.293 4.293 8 H 0.063 0.937 9 N -0.592 5.592 10 C 0.142 3.858 11 C -0.137 4.137 12 C -0.125 4.125 13 C 0.143 3.857 14 H 0.040 0.960 15 C 0.112 3.888 16 N -0.679 5.679 17 C 0.507 3.493 18 O -0.568 6.568 19 C 0.191 3.809 20 N -0.741 5.741 21 C 0.679 3.321 22 N -0.870 5.870 23 O -0.517 6.517 24 C -0.137 4.137 25 C -0.108 4.108 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.107 4.107 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.413 0.587 39 H 0.392 0.608 40 H 0.389 0.611 41 H 0.417 0.583 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 -3.166 13.247 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.209 4.209 3 Si 0.897 3.103 4 H -0.228 1.228 5 H -0.237 1.237 6 H -0.198 1.198 7 C -0.421 4.421 8 H 0.081 0.919 9 N -0.318 5.318 10 C 0.017 3.983 11 C -0.176 4.176 12 C -0.163 4.163 13 C 0.035 3.965 14 H 0.058 0.942 15 C -0.015 4.015 16 N -0.335 5.335 17 C 0.291 3.709 18 O -0.449 6.449 19 C 0.101 3.899 20 N -0.401 5.401 21 C 0.377 3.623 22 N -0.439 5.439 23 O -0.389 6.389 24 C -0.175 4.175 25 C -0.146 4.146 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.258 0.742 39 H 0.226 0.774 40 H 0.215 0.785 41 H 0.250 0.750 42 H 0.087 0.913 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.261 -2.063 11.832 14.577 hybrid contribution -0.273 -1.150 1.049 1.580 sum 7.988 -3.213 12.881 15.493 Atomic orbital electron populations 1.70797 1.06675 1.29949 1.51084 1.25529 0.96279 1.00744 0.98365 0.83549 0.74483 0.75823 0.76417 1.22829 1.23684 1.19810 1.19668 0.93871 0.84707 1.43845 0.91921 1.44623 1.37581 1.01604 1.48027 1.21566 0.91865 0.92355 0.92546 1.22805 0.99657 0.98181 0.96937 1.22514 0.98914 0.97543 0.97357 1.21406 0.96649 0.87144 0.91251 0.94224 1.21899 0.92392 0.91722 0.95452 1.46264 1.09303 1.20147 1.57783 1.20652 0.83207 0.86337 0.80723 1.90617 1.74619 1.26020 1.53600 1.20278 0.89669 0.90236 0.89709 1.45287 1.47742 1.37218 1.09848 1.16419 0.79468 0.79961 0.86406 1.43054 1.48121 1.43829 1.08891 1.91242 1.66169 1.70003 1.11533 1.22100 0.99620 0.98189 0.97640 1.21407 0.96837 0.97630 0.98733 1.21581 0.97858 0.98161 0.98200 1.21522 0.98326 0.97586 0.97763 1.21631 0.96606 0.97167 0.99160 0.92500 0.95647 0.93878 0.92405 0.92198 0.92133 0.92267 0.91944 0.92723 0.74243 0.77398 0.78457 0.75047 0.91260 0.86502 0.92105 0.92010 0.92375 0.91933 0.92111 0.91825 0.91532 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.52 13.12 55.49 0.73 -27.79 16 2 C -0.01 -0.25 4.89 -17.43 -0.09 -0.34 16 3 Si 1.07 26.98 28.46 -169.99 -4.84 22.14 16 4 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 5 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.47 6.19 56.52 0.35 -6.12 16 7 C -0.29 -8.14 6.87 -15.06 -0.10 -8.24 16 8 H 0.06 1.84 6.38 -52.49 -0.34 1.50 16 9 N -0.59 -15.25 2.93 -162.58 -0.48 -15.72 16 10 C 0.14 3.45 5.48 -2.53 -0.01 3.44 16 11 C -0.14 -2.68 7.08 -24.59 -0.17 -2.85 16 12 C -0.12 -2.36 6.47 -24.90 -0.16 -2.52 16 13 C 0.14 3.24 3.39 -66.96 -0.23 3.02 16 14 H 0.04 1.01 7.85 -51.93 -0.41 0.60 16 15 C 0.11 2.36 5.43 -4.05 -0.02 2.33 16 16 N -0.68 -14.04 3.49 -60.30 -0.21 -14.25 16 17 C 0.51 9.96 6.49 -10.98 -0.07 9.89 16 18 O -0.57 -12.59 15.69 5.56 0.09 -12.51 16 19 C 0.19 2.90 0.63 -132.96 -0.08 2.81 16 20 N -0.74 -9.33 3.85 -53.50 -0.21 -9.54 16 21 C 0.68 10.31 6.41 -86.92 -0.56 9.75 16 22 N -0.87 -9.83 8.88 27.63 0.25 -9.58 16 23 O -0.52 -10.48 7.18 5.29 0.04 -10.45 16 24 C -0.14 -2.26 4.31 -26.73 -0.12 -2.38 16 25 C -0.11 -1.41 5.75 -26.73 -0.15 -1.57 16 26 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 27 C -0.11 -1.08 5.76 -26.70 -0.15 -1.24 16 28 C -0.11 -1.31 4.39 -26.71 -0.12 -1.43 16 29 H 0.26 8.01 5.60 -40.82 -0.23 7.79 16 30 H 0.03 0.66 6.51 -51.93 -0.34 0.32 16 31 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.06 7.86 -51.93 -0.41 0.66 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.05 1.08 7.74 -51.93 -0.40 0.68 16 38 H 0.41 8.83 3.95 -40.82 -0.16 8.67 16 39 H 0.39 3.61 7.79 -40.82 -0.32 3.29 16 40 H 0.39 2.82 8.85 -40.82 -0.36 2.46 16 41 H 0.42 5.08 8.93 -40.82 -0.36 4.71 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.12 2.40 4.81 -51.93 -0.25 2.15 16 44 H 0.06 0.80 7.18 -51.93 -0.37 0.42 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.09 1.23 7.85 -51.93 -0.41 0.82 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -34.77 371.25 -9.46 -44.23 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -8.22 Total: 18.62 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -2.20 Total: 9.26 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: 0.08 Total: -76.89 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.13 Total: -22.95 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -4.84 Total: 22.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.77 -9.46 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691100336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.506 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds