Wall clock time and date at job start Tue Mar 31 2020 21:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99943 * 2 1 4 4 C 1.53000 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46978 * 185.09331 * 4 3 2 6 6 C 1.50703 * 112.85001 * 303.25223 * 5 4 3 7 7 O 1.21279 * 119.99424 * 113.79981 * 6 5 4 8 8 N 1.34777 * 120.00133 * 293.80164 * 6 5 4 9 9 C 1.47135 * 121.06155 * 354.84325 * 8 6 5 10 10 C 1.53220 * 108.72368 * 127.72897 * 9 8 6 11 11 O 1.43117 * 109.35821 * 54.19692 * 10 9 8 12 12 C 1.42359 * 113.98837 * 300.22178 * 11 10 9 13 13 C 1.52917 * 114.29578 * 285.04501 * 12 11 10 14 14 N 1.47159 * 87.84991 * 271.72460 * 13 12 11 15 15 C 1.36931 * 136.00382 * 153.32664 * 14 13 12 16 16 H 1.08003 * 119.99974 * 4.90583 * 15 14 13 17 17 C 1.38814 * 120.00265 * 184.91088 * 15 14 13 18 18 N 1.31627 * 120.00045 * 5.11546 * 17 15 14 19 19 Si 1.86795 * 120.00127 * 185.11828 * 17 15 14 20 20 H 1.48494 * 109.47323 * 265.00172 * 19 17 15 21 21 H 1.48503 * 109.47097 * 25.00500 * 19 17 15 22 22 H 1.48500 * 109.47246 * 144.99997 * 19 17 15 23 23 C 1.47183 * 87.99949 * 333.58094 * 14 13 12 24 24 C 1.47356 * 121.05728 * 174.87335 * 8 6 5 25 25 C 1.53775 * 113.61741 * 74.45474 * 5 4 3 26 26 C 1.53957 * 87.02173 * 89.22623 * 25 5 4 27 27 C 1.53786 * 87.11009 * 25.36380 * 26 25 5 28 28 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47302 * 299.99997 * 1 2 3 30 30 H 1.09003 * 109.47654 * 59.99739 * 1 2 3 31 31 H 1.08997 * 109.47315 * 59.99628 * 3 2 1 32 32 H 1.09006 * 109.47312 * 299.99821 * 3 2 1 33 33 H 1.09004 * 109.47403 * 65.09270 * 4 3 2 34 34 H 1.08998 * 109.47055 * 305.09040 * 4 3 2 35 35 H 1.08995 * 109.59200 * 247.50117 * 9 8 6 36 36 H 1.09001 * 109.59166 * 7.80554 * 9 8 6 37 37 H 1.09005 * 109.49100 * 174.16097 * 10 9 8 38 38 H 1.09006 * 109.49277 * 294.22855 * 10 9 8 39 39 H 1.09001 * 113.49222 * 156.97916 * 13 12 11 40 40 H 1.08995 * 113.54632 * 26.47976 * 13 12 11 41 41 H 0.96991 * 119.99929 * 180.02562 * 18 17 15 42 42 H 1.09000 * 113.49251 * 141.16985 * 23 14 13 43 43 H 1.09000 * 113.49337 * 271.67771 * 23 14 13 44 44 H 1.08994 * 109.75139 * 108.59294 * 24 8 6 45 45 H 1.08999 * 109.75088 * 347.85560 * 24 8 6 46 46 H 1.08999 * 113.61710 * 203.74730 * 25 5 4 47 47 H 1.09003 * 113.61470 * 334.64902 * 25 5 4 48 48 H 1.09002 * 113.53827 * 270.81440 * 26 25 5 49 49 H 1.08998 * 113.74397 * 139.94500 * 26 25 5 50 50 H 1.08993 * 113.61166 * 220.08860 * 27 26 25 51 51 H 1.08996 * 113.61002 * 89.18991 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5768 0.1274 6 6 3.7070 3.5209 -0.9575 7 8 3.0284 4.4864 -0.6779 8 7 4.0585 3.2923 -2.2384 9 6 4.9723 2.1942 -2.5905 10 6 4.3199 1.3432 -3.6849 11 8 3.9487 2.1842 -4.7818 12 6 3.0273 3.2129 -4.4363 13 6 1.5926 2.7276 -4.2253 14 7 1.3721 2.9269 -5.6666 15 6 0.5465 2.3933 -6.6198 16 1 -0.2147 1.6810 -6.3376 17 6 0.6880 2.7677 -7.9490 18 7 1.6782 3.5568 -8.3087 19 14 -0.5268 2.1516 -9.2273 20 1 0.0173 0.9344 -9.8811 21 1 -1.8164 1.8248 -8.5675 22 1 -0.7470 3.2060 -10.2495 23 6 2.4326 3.9469 -5.6353 24 6 3.5402 4.1345 -3.3308 25 6 4.0537 3.1700 1.5424 26 6 5.3998 2.4850 1.8411 27 6 5.6814 2.5542 0.3308 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8631 0.7247 -0.9330 34 1 3.8513 0.5669 0.8400 35 1 5.9125 2.6048 -2.9584 36 1 5.1613 1.5796 -1.7103 37 1 5.0272 0.5882 -4.0287 38 1 3.4317 0.8543 -3.2846 39 1 0.9970 3.3916 -3.5988 40 1 1.5268 1.6846 -3.9159 41 1 1.7768 3.8187 -9.2373 42 1 3.0761 3.9318 -6.5150 43 1 2.0679 4.9458 -5.3960 44 1 4.3388 4.7665 -3.7193 45 1 2.7244 4.7560 -2.9615 46 1 4.1034 4.2586 1.5642 47 1 3.2217 2.7716 2.1230 48 1 5.2962 1.4682 2.2198 49 1 6.0780 3.0927 2.4400 50 1 6.1616 1.6594 -0.0651 51 1 6.1770 3.4741 0.0209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700201166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:43 Heat of formation + Delta-G solvation = -26.719323 kcal Electronic energy + Delta-G solvation = -32214.464516 eV Core-core repulsion = 28117.655099 eV Total energy + Delta-G solvation = -4096.809417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28414 -39.64425 -37.97078 -37.51386 -36.36394 -34.47994 -32.30426 -31.77980 -30.10291 -28.22304 -27.23519 -26.42435 -25.88948 -25.01606 -24.86886 -23.30508 -22.87308 -21.99918 -20.17555 -18.85658 -18.55800 -17.09962 -16.86479 -16.64199 -16.45674 -16.09516 -15.71349 -15.44966 -15.10677 -15.00044 -14.78153 -14.41940 -14.39057 -14.01928 -13.67315 -13.46100 -13.38177 -12.92112 -12.71176 -12.61187 -12.48228 -12.30302 -11.96348 -11.72858 -11.58753 -11.42165 -11.32175 -11.28949 -11.08198 -10.86066 -10.82533 -10.75052 -10.73741 -10.53389 -10.13403 -9.99354 -9.77574 -9.64037 -9.42525 -9.11547 -8.83467 -8.29763 -6.86007 -5.73617 -3.07328 2.59622 2.92980 3.41059 3.45538 3.47709 3.47913 4.06804 4.10063 4.26322 4.37425 4.45656 4.50762 4.62103 4.87815 4.89649 5.00297 5.01633 5.09318 5.12198 5.22255 5.24752 5.27511 5.29809 5.36480 5.39639 5.44031 5.48548 5.55540 5.57418 5.58736 5.60858 5.71115 5.75672 5.78409 5.82756 5.88014 5.94757 6.05731 6.11555 6.30290 6.37716 6.48234 6.58121 6.92840 6.99561 7.19696 7.41729 7.51518 7.84488 8.01030 8.17260 9.04103 9.71914 10.62785 11.42757 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.003532 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.987196 B = 7924.772528 C = 8875.985724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.094 4.094 5 C -0.104 4.104 6 C 0.530 3.470 7 O -0.540 6.540 8 N -0.606 5.606 9 C 0.066 3.934 10 C 0.043 3.957 11 O -0.329 6.329 12 C 0.049 3.951 13 C 0.102 3.898 14 N -0.598 5.598 15 C -0.216 4.216 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.166 3.834 24 C 0.102 3.898 25 C -0.112 4.112 26 C -0.140 4.140 27 C -0.124 4.124 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 -4.382 20.694 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.131 4.131 5 C -0.108 4.108 6 C 0.318 3.682 7 O -0.417 6.417 8 N -0.339 5.339 9 C -0.057 4.057 10 C -0.035 4.035 11 O -0.247 6.247 12 C 0.007 3.993 13 C -0.025 4.025 14 N -0.323 5.323 15 C -0.343 4.343 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.562 5.562 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.216 1.216 23 C 0.040 3.960 24 C -0.021 4.021 25 C -0.150 4.150 26 C -0.178 4.178 27 C -0.161 4.161 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.097 0.903 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.527 -4.104 20.284 22.383 hybrid contribution -0.991 -0.039 -0.559 1.139 sum 7.535 -4.143 19.724 21.517 Atomic orbital electron populations 1.22746 0.80694 1.02737 1.00290 1.87808 1.20007 1.27725 1.95512 1.22481 0.93392 0.84805 1.00908 1.21367 0.93781 0.93731 1.04231 1.22068 0.97980 0.95378 0.95341 1.20328 0.79511 0.85684 0.82685 1.90683 1.39042 1.30071 1.81878 1.48181 1.47259 1.32231 1.06252 1.22664 0.93339 0.89668 1.00016 1.22902 0.99348 0.92965 0.88266 1.88053 1.61796 1.43386 1.31442 1.23266 0.88999 0.89946 0.97098 1.22860 0.92402 0.98376 0.88836 1.45263 1.42992 1.42121 1.01973 1.18863 1.09348 1.20249 0.85865 0.90244 1.24774 0.98617 1.00190 0.96671 1.69817 1.30983 1.38994 1.16439 0.86093 0.80385 0.77842 0.81380 1.21530 1.20669 1.21594 1.22045 0.89132 0.90834 0.94013 1.22186 1.00181 0.93463 0.86257 1.22881 0.97836 1.01271 0.92999 1.22881 0.97544 1.01361 0.95975 1.23029 0.92962 1.03055 0.97084 0.89560 0.94180 0.93655 0.92958 0.93042 0.89944 0.89611 0.90511 0.88531 0.88087 0.92801 0.94427 0.94256 0.93641 0.89156 0.94213 0.90833 0.88224 0.88949 0.90822 0.89726 0.90929 0.90269 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.39 -4.93 10.70 -35.23 -0.38 -5.31 16 3 C 0.06 0.73 5.54 37.16 0.21 0.93 16 4 C -0.09 -0.92 4.62 -26.73 -0.12 -1.04 16 5 C -0.10 -1.05 0.29 -154.85 -0.05 -1.10 16 6 C 0.53 7.37 5.62 -10.98 -0.06 7.31 16 7 O -0.54 -9.36 15.69 5.56 0.09 -9.28 16 8 N -0.61 -8.45 3.03 -172.48 -0.52 -8.97 16 9 C 0.07 0.75 5.43 -3.58 -0.02 0.73 16 10 C 0.04 0.61 6.85 37.27 0.26 0.86 16 11 O -0.33 -6.47 10.53 -35.23 -0.37 -6.84 16 12 C 0.05 0.96 1.27 -90.95 -0.12 0.85 16 13 C 0.10 2.22 7.91 -8.22 -0.06 2.15 16 14 N -0.60 -15.87 3.78 -184.96 -0.70 -16.57 16 15 C -0.22 -6.23 10.74 -15.06 -0.16 -6.39 16 16 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -27.50 11.43 55.49 0.63 -26.86 16 19 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 C 0.17 3.99 6.98 -8.34 -0.06 3.93 16 24 C 0.10 1.68 5.82 -3.68 -0.02 1.66 16 25 C -0.11 -1.04 6.74 -25.83 -0.17 -1.21 16 26 C -0.14 -0.96 7.74 -25.82 -0.20 -1.16 16 27 C -0.12 -0.95 5.82 -25.91 -0.15 -1.10 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.60 7.25 -51.93 -0.38 0.22 16 32 H 0.05 0.74 7.51 -51.93 -0.39 0.34 16 33 H 0.08 0.81 5.87 -51.93 -0.30 0.51 16 34 H 0.09 0.71 7.31 -51.93 -0.38 0.33 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.85 3.16 -51.93 -0.16 0.68 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.80 7.28 -51.93 -0.38 0.42 16 39 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 40 H 0.04 0.85 7.36 -51.93 -0.38 0.47 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 2.44 6.88 -51.93 -0.36 2.08 16 43 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.10 1.74 6.94 -51.93 -0.36 1.38 16 46 H 0.09 0.97 7.72 -51.93 -0.40 0.57 16 47 H 0.07 0.65 7.33 -51.93 -0.38 0.27 16 48 H 0.08 0.50 7.60 -51.93 -0.39 0.10 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.49 7.19 -51.93 -0.37 0.11 16 51 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -34.35 390.59 -8.51 -42.85 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.40 Total: 0.03 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 0.28 Total: 7.63 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.59 Total: -52.41 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.66 Total: -21.43 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.35 -8.51 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700201166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.133 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds