Wall clock time and date at job start Tue Mar 31 2020 21:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99682 * 2 1 4 4 H 1.09002 * 109.46855 * 29.99971 * 3 2 1 5 5 C 1.50699 * 109.47004 * 270.00145 * 3 2 1 6 6 O 1.21273 * 120.00067 * 355.00132 * 5 3 2 7 7 N 1.34779 * 119.99764 * 174.99657 * 5 3 2 8 8 C 1.46497 * 119.99883 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47085 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.51766 * 307.79390 * 9 8 7 11 11 C 1.55059 * 110.58197 * 184.99868 * 9 8 7 12 12 C 1.55030 * 102.12935 * 204.93083 * 11 9 8 13 13 C 1.53322 * 103.78366 * 20.86698 * 12 11 9 14 14 C 1.52652 * 115.56243 * 133.64213 * 13 12 11 15 15 N 1.47222 * 87.77949 * 90.04529 * 14 13 12 16 16 C 1.36932 * 135.96431 * 206.41651 * 15 14 13 17 17 H 1.08004 * 120.00066 * 6.79093 * 16 15 14 18 18 C 1.38808 * 119.99884 * 186.79269 * 16 15 14 19 19 N 1.31629 * 119.99858 * 172.34298 * 18 16 15 20 20 Si 1.86797 * 120.00274 * 352.34104 * 18 16 15 21 21 H 1.48502 * 109.47471 * 175.35206 * 20 18 16 22 22 H 1.48504 * 109.47042 * 55.35242 * 20 18 16 23 23 H 1.48501 * 109.47081 * 295.35483 * 20 18 16 24 24 C 1.47219 * 88.06699 * 26.66772 * 15 14 13 25 25 O 1.42842 * 108.32807 * 1.60437 * 13 12 11 26 26 C 1.52999 * 109.47144 * 150.00049 * 3 2 1 27 27 C 1.53788 * 113.61218 * 39.13668 * 26 3 2 28 28 C 1.53957 * 87.01920 * 220.04981 * 27 26 3 29 29 C 1.53780 * 113.61224 * 301.53030 * 26 3 2 30 30 H 1.09003 * 109.47033 * 299.99859 * 1 2 3 31 31 H 1.08994 * 109.47614 * 59.99890 * 1 2 3 32 32 H 1.09004 * 109.46566 * 180.02562 * 1 2 3 33 33 H 0.96994 * 119.99774 * 0.02562 * 7 5 3 34 34 H 1.09002 * 109.47350 * 60.00170 * 8 7 5 35 35 H 1.09006 * 109.47215 * 300.00587 * 8 7 5 36 36 H 1.09008 * 110.87007 * 86.77543 * 11 9 8 37 37 H 1.08998 * 111.05506 * 323.17713 * 11 9 8 38 38 H 1.08993 * 110.56812 * 262.29252 * 12 11 9 39 39 H 1.08997 * 110.68568 * 139.49791 * 12 11 9 40 40 H 1.09002 * 113.50148 * 335.31600 * 14 13 12 41 41 H 1.09005 * 113.56183 * 204.78256 * 14 13 12 42 42 H 0.96991 * 120.00047 * 4.89162 * 19 18 16 43 43 H 1.09004 * 113.49685 * 88.06070 * 24 15 14 44 44 H 1.08993 * 113.49991 * 218.60291 * 24 15 14 45 45 H 1.08994 * 112.84847 * 170.33409 * 26 3 2 46 46 H 1.09000 * 113.61313 * 334.56481 * 27 26 3 47 47 H 1.09002 * 113.61092 * 105.47229 * 27 26 3 48 48 H 1.09000 * 113.53294 * 270.81785 * 28 27 26 49 49 H 1.08996 * 113.74515 * 139.94421 * 28 27 26 50 50 H 1.08995 * 113.61528 * 254.52515 * 29 26 3 51 51 H 1.09003 * 113.61959 * 25.35194 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 8 1.9791 1.0107 -2.3412 7 7 2.6586 3.0126 -1.6685 8 6 2.8577 3.4586 -3.0497 9 6 3.3634 4.9026 -3.0515 10 1 2.7116 5.5365 -2.4503 11 6 3.4637 5.4433 -4.5014 12 6 4.5386 6.5517 -4.3620 13 6 5.2869 6.1756 -3.0777 14 6 6.8102 6.2200 -3.1659 15 7 6.7368 7.6271 -2.7392 16 6 7.5104 8.7457 -2.8984 17 1 8.3694 8.7196 -3.5525 18 6 7.1905 9.9131 -2.2191 19 7 8.0134 10.9400 -2.2515 20 14 5.5922 10.0271 -1.2589 21 1 5.5394 11.3241 -0.5375 22 1 5.5226 8.9129 -0.2796 23 1 4.4441 9.9349 -2.1962 24 6 5.4707 7.3035 -2.0611 25 8 4.7250 4.9651 -2.5686 26 6 3.3589 1.2635 0.7212 27 6 4.1773 -0.0041 0.4235 28 6 4.5679 -0.0045 1.9127 29 6 3.2650 0.7695 2.1745 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 2.8472 3.6153 -0.9323 34 1 1.9122 3.4037 -3.5892 35 1 3.5916 2.8163 -3.5367 36 1 2.5119 5.8640 -4.8256 37 1 3.7958 4.6643 -5.1877 38 1 4.0689 7.5298 -4.2590 39 1 5.2154 6.5413 -5.2164 40 1 7.1909 6.0923 -4.1792 41 1 7.3075 5.5722 -2.4439 42 1 8.8081 10.9073 -2.8066 43 1 5.6035 6.9496 -1.0387 44 1 4.7209 8.0903 -2.1420 45 1 3.9275 2.1866 0.6097 46 1 3.5674 -0.8591 0.1319 47 1 5.0177 0.1669 -0.2492 48 1 5.4683 0.5713 2.1267 49 1 4.5837 -0.9974 2.3620 50 1 3.3701 1.5640 2.9133 51 1 2.4046 0.1274 2.3629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700205084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:14 Heat of formation + Delta-G solvation = -40.821014 kcal Electronic energy + Delta-G solvation = -30473.698202 eV Core-core repulsion = 26376.277289 eV Total energy + Delta-G solvation = -4097.420912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.68848 -40.20079 -38.63578 -37.27040 -36.84823 -34.66439 -32.38401 -32.09803 -30.64438 -29.04209 -27.17837 -26.47762 -25.79731 -25.57314 -24.38253 -23.25775 -21.58605 -21.31283 -20.54674 -19.60585 -19.19370 -17.80528 -17.51800 -17.07393 -16.80324 -16.39378 -15.82020 -15.63744 -15.47484 -15.09295 -14.82197 -14.62599 -14.35120 -13.91103 -13.75868 -13.53316 -13.20805 -13.12836 -12.96634 -12.66022 -12.51047 -12.29912 -12.15322 -12.09865 -11.78261 -11.61668 -11.48004 -11.25615 -11.11346 -10.86558 -10.84236 -10.73682 -10.60824 -10.45405 -10.44236 -10.38552 -9.90888 -9.43294 -9.27790 -9.23883 -8.91788 -8.86024 -7.21024 -6.37684 -3.28584 2.40046 2.83077 3.34014 3.38669 3.44378 3.59664 3.77248 4.18671 4.39860 4.40930 4.53602 4.54593 4.60117 4.63689 4.65566 4.80444 4.84077 4.85042 4.93193 4.94559 5.06351 5.09017 5.15787 5.34914 5.36630 5.37683 5.41343 5.46154 5.53413 5.53652 5.63829 5.68809 5.75827 5.83786 5.86257 5.96760 6.10253 6.16008 6.17974 6.23107 6.26293 6.28243 6.29537 6.33503 6.51262 6.67397 7.01959 7.26125 7.30408 8.03265 8.18327 8.92143 9.43982 10.29503 11.15283 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.002674 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.983795 B =10468.072250 C =11259.510021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.084 3.916 4 H 0.087 0.913 5 C 0.492 3.508 6 O -0.529 6.529 7 N -0.723 5.723 8 C 0.129 3.871 9 C 0.062 3.938 10 H 0.076 0.924 11 C -0.146 4.146 12 C -0.114 4.114 13 C 0.060 3.940 14 C 0.133 3.867 15 N -0.620 5.620 16 C -0.302 4.302 17 H 0.084 0.916 18 C -0.024 4.024 19 N -0.932 5.932 20 Si 1.071 2.929 21 H -0.294 1.294 22 H -0.286 1.286 23 H -0.294 1.294 24 C 0.090 3.910 25 O -0.355 6.355 26 C -0.112 4.112 27 C -0.128 4.128 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 -20.464 4.995 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.022 3.978 4 H 0.104 0.896 5 C 0.278 3.722 6 O -0.405 6.405 7 N -0.377 5.377 8 C 0.005 3.995 9 C 0.003 3.997 10 H 0.094 0.906 11 C -0.184 4.184 12 C -0.151 4.151 13 C 0.019 3.981 14 C 0.007 3.993 15 N -0.350 5.350 16 C -0.428 4.428 17 H 0.102 0.898 18 C -0.223 4.223 19 N -0.575 5.575 20 Si 0.903 3.097 21 H -0.222 1.222 22 H -0.213 1.213 23 H -0.223 1.223 24 C -0.036 4.036 25 O -0.273 6.273 26 C -0.130 4.130 27 C -0.165 4.165 28 C -0.179 4.179 29 C -0.166 4.166 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.239 0.761 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.858 -20.154 5.415 26.827 hybrid contribution 0.781 -0.187 -0.826 1.152 sum -16.077 -20.340 4.589 26.330 Atomic orbital electron populations 1.22863 0.80791 1.03175 0.99965 1.87972 1.19776 1.24829 1.94333 1.21869 0.97118 0.86718 0.92081 0.89556 1.21326 0.77132 0.81568 0.92212 1.90701 1.50155 1.53547 1.46096 1.46001 1.67781 1.14645 1.09261 1.21424 1.01110 0.93713 0.83211 1.23366 0.85995 0.95155 0.95144 0.90615 1.23143 1.00105 0.98986 0.96161 1.22385 0.96886 0.98737 0.97115 1.23698 0.95667 0.84689 0.94003 1.22363 0.91004 0.87264 0.98689 1.45708 1.23719 1.04324 1.61256 1.20092 1.08488 0.87060 1.27170 0.89784 1.25740 1.04302 0.92315 0.99955 1.70922 1.13818 1.32774 1.39957 0.83692 0.74767 0.75052 0.76156 1.22155 1.21296 1.22274 1.23192 0.90044 0.94308 0.96033 1.88775 1.24017 1.41217 1.73270 1.22754 0.93371 1.00446 0.96479 1.22858 0.99295 0.97839 0.96504 1.22822 0.97565 1.00700 0.96851 1.22887 0.98808 1.00013 0.94917 0.93974 0.93744 0.89259 0.76134 0.90246 0.90447 0.90098 0.90191 0.90146 0.89907 0.93179 0.93654 0.92843 0.93114 0.93090 0.87423 0.88759 0.91575 0.90148 0.91380 0.91322 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.81 101.05 1.09 1.31 16 2 O -0.35 -3.62 7.99 -55.09 -0.44 -4.06 16 3 C 0.08 0.77 2.53 -27.88 -0.07 0.70 16 4 H 0.09 0.59 7.79 -51.93 -0.40 0.19 16 5 C 0.49 5.76 7.11 -10.98 -0.08 5.68 16 6 O -0.53 -8.25 16.51 -14.30 -0.24 -8.48 16 7 N -0.72 -7.42 5.49 -60.29 -0.33 -7.75 16 8 C 0.13 1.40 5.41 -4.04 -0.02 1.38 16 9 C 0.06 0.72 3.38 -25.64 -0.09 0.63 16 10 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.15 -1.63 6.60 -24.57 -0.16 -1.79 16 12 C -0.11 -1.69 6.46 -25.49 -0.16 -1.86 16 13 C 0.06 1.05 1.66 -90.66 -0.15 0.90 16 14 C 0.13 2.68 8.20 -8.03 -0.07 2.61 16 15 N -0.62 -15.13 3.66 -184.61 -0.68 -15.81 16 16 C -0.30 -8.62 11.08 -15.06 -0.17 -8.79 16 17 H 0.08 2.52 8.05 -52.48 -0.42 2.10 16 18 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 19 N -0.93 -29.19 13.70 55.49 0.76 -28.43 16 20 Si 1.07 26.40 25.13 -169.99 -4.27 22.12 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -6.60 6.11 56.52 0.35 -6.25 16 23 H -0.29 -6.77 6.63 56.52 0.37 -6.40 16 24 C 0.09 1.89 5.22 -7.88 -0.04 1.85 16 25 O -0.35 -5.41 11.02 -35.23 -0.39 -5.80 16 26 C -0.11 -0.96 3.54 -89.81 -0.32 -1.27 16 27 C -0.13 -1.22 7.48 -25.82 -0.19 -1.42 16 28 C -0.14 -1.12 8.09 -25.82 -0.21 -1.33 16 29 C -0.13 -0.95 7.54 -25.92 -0.20 -1.15 16 30 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.40 3.47 8.34 -40.82 -0.34 3.13 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.08 1.26 7.82 -51.93 -0.41 0.85 16 39 H 0.08 1.24 7.81 -51.93 -0.41 0.83 16 40 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 43 H 0.05 1.08 7.69 -51.93 -0.40 0.68 16 44 H 0.05 1.09 4.50 -51.93 -0.23 0.85 16 45 H 0.11 0.88 7.97 -51.93 -0.41 0.47 16 46 H 0.09 1.01 7.03 -51.93 -0.36 0.65 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.09 0.64 7.72 -51.93 -0.40 0.24 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -34.49 401.01 -9.39 -43.89 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.93 Total: 1.63 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.93 Total: -3.36 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.25 Total: -51.98 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.06 Total: -18.34 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.27 Total: 22.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.49 -9.39 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700205084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.065 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds