Wall clock time and date at job start Tue Mar 31 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42904 * 113.99723 * 2 1 4 4 H 1.09000 * 109.47316 * 29.99941 * 3 2 1 5 5 C 1.50701 * 109.46981 * 150.00394 * 3 2 1 6 6 O 1.21280 * 119.99781 * 4.99580 * 5 3 2 7 7 N 1.34771 * 119.99622 * 185.00256 * 5 3 2 8 8 C 1.46505 * 119.99622 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.29334 * 305.70265 * 9 8 7 11 11 C 1.54546 * 110.33028 * 183.55898 * 9 8 7 12 12 C 1.54744 * 104.07183 * 217.47230 * 11 9 8 13 13 C 1.53460 * 103.72406 * 0.76878 * 12 11 9 14 14 C 1.52891 * 115.57841 * 252.69563 * 13 12 11 15 15 N 1.47784 * 85.78232 * 219.73041 * 14 13 12 16 16 C 1.36939 * 134.40288 * 203.85214 * 15 14 13 17 17 H 1.08004 * 119.99835 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00082 * 0.03061 * 16 15 14 19 19 N 1.31620 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99993 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47128 * 89.99913 * 20 18 16 22 22 H 1.48501 * 109.47113 * 209.99621 * 20 18 16 23 23 H 1.48497 * 109.47435 * 330.00023 * 20 18 16 24 24 C 1.47786 * 91.19540 * 23.87207 * 15 14 13 25 25 O 1.43343 * 106.32989 * 22.63481 * 13 12 11 26 26 C 1.53003 * 109.46997 * 270.00090 * 3 2 1 27 27 C 1.53786 * 113.61272 * 157.49865 * 26 3 2 28 28 C 1.53788 * 87.08000 * 220.02124 * 27 26 3 29 29 C 1.53783 * 113.61158 * 60.00330 * 26 3 2 30 30 H 1.08998 * 109.46731 * 299.99428 * 1 2 3 31 31 H 1.08997 * 109.47015 * 60.00031 * 1 2 3 32 32 H 1.08999 * 109.46858 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00772 * 359.97438 * 7 5 3 34 34 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 35 35 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 36 36 H 1.08999 * 110.51226 * 336.11954 * 11 9 8 37 37 H 1.09002 * 110.50911 * 98.69080 * 11 9 8 38 38 H 1.09002 * 110.57174 * 119.32707 * 12 11 9 39 39 H 1.09005 * 110.57338 * 242.05886 * 12 11 9 40 40 H 1.08998 * 113.81920 * 333.94486 * 14 13 12 41 41 H 1.08998 * 113.82069 * 105.51837 * 14 13 12 42 42 H 0.96999 * 119.99593 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.82160 * 221.91151 * 24 15 14 44 44 H 1.09000 * 113.93522 * 90.35491 * 24 15 14 45 45 H 1.08991 * 112.84983 * 288.80432 * 26 3 2 46 46 H 1.09001 * 113.61370 * 334.56903 * 27 26 3 47 47 H 1.08994 * 113.61275 * 105.47251 * 27 26 3 48 48 H 1.09001 * 113.61111 * 270.88616 * 28 27 26 49 49 H 1.08994 * 113.68849 * 139.99382 * 28 27 26 50 50 H 1.08996 * 113.61460 * 254.52363 * 29 26 3 51 51 H 1.08994 * 113.61841 * 25.43363 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3387 1.2640 0.7103 6 8 3.7897 0.2045 1.0913 7 7 4.0254 2.4041 0.9223 8 6 5.3166 2.3637 1.6134 9 6 5.8811 3.7816 1.7226 10 1 5.9274 4.2469 0.7380 11 6 7.2845 3.7524 2.3691 12 6 7.3153 5.0181 3.2589 13 6 5.9271 5.6399 3.0554 14 6 5.8918 6.9135 2.2103 15 7 4.8887 7.3993 3.1808 16 6 3.8838 8.3284 3.1362 17 1 3.2714 8.5038 4.0084 18 6 3.6520 9.0447 1.9700 19 7 4.3986 8.8311 0.9072 20 14 2.2807 10.3116 1.9089 21 1 2.8113 11.6357 2.3221 22 1 1.7506 10.4009 0.5246 23 1 1.1902 9.9056 2.8314 24 6 5.4037 6.4821 4.2190 25 8 5.0700 4.5779 2.6170 26 6 2.2176 1.7714 -1.4425 27 6 2.3077 3.2996 -1.5894 28 6 1.4684 3.1472 -2.8690 29 6 0.9161 1.8485 -2.2581 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.6648 3.2513 0.6174 34 1 5.1814 1.9482 2.6120 35 1 6.0105 1.7391 1.0508 36 1 7.4066 2.8556 2.9765 37 1 8.0588 3.8023 1.6036 38 1 7.4645 4.7479 4.3043 39 1 8.0963 5.7016 2.9257 40 1 6.8251 7.4763 2.2229 41 1 5.4960 6.7644 1.2057 42 1 4.2364 9.3314 0.0922 43 1 4.6226 5.9924 4.8005 44 1 6.1898 6.9129 4.8392 45 1 3.0195 1.2348 -1.9495 46 1 1.7979 3.8453 -0.7953 47 1 3.3194 3.6619 -1.7713 48 1 2.0660 2.9879 -3.7666 49 1 0.7156 3.9255 -2.9943 50 1 0.8046 1.0395 -2.9799 51 1 0.0261 1.9976 -1.6469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700205094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:20 Heat of formation + Delta-G solvation = -66.179579 kcal Electronic energy + Delta-G solvation = -30901.448460 eV Core-core repulsion = 26802.927918 eV Total energy + Delta-G solvation = -4098.520542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.60946 -41.19997 -39.58688 -38.08542 -37.75883 -35.63524 -34.08463 -33.07770 -31.55637 -30.13630 -28.51436 -27.38050 -26.78681 -26.49644 -25.54415 -24.32083 -23.18374 -22.21122 -21.34909 -20.58226 -20.49523 -18.74437 -18.57594 -18.04459 -17.41184 -17.24289 -17.01156 -16.62618 -16.22404 -16.04176 -15.94207 -15.77840 -15.38169 -15.14432 -14.76100 -14.64001 -14.29686 -14.21813 -14.10812 -13.58313 -13.49975 -13.14771 -13.01076 -12.93299 -12.90003 -12.83874 -12.62132 -12.55560 -12.47354 -12.27789 -12.19577 -11.89676 -11.64901 -11.48240 -11.31467 -11.30373 -11.23006 -10.95652 -10.89630 -10.42847 -10.30800 -10.16636 -8.90166 -7.88397 -5.20772 1.45293 1.46731 1.48008 1.55312 1.83169 2.47599 2.74075 2.92230 3.30283 3.40073 3.43744 3.61098 3.62633 3.71017 3.75540 3.86862 3.88033 3.92244 4.02744 4.05768 4.17506 4.29156 4.43102 4.49778 4.51359 4.54141 4.57884 4.74143 4.74481 4.78358 4.80599 4.83860 4.90087 4.91883 4.98940 5.04883 5.05354 5.07366 5.10481 5.17076 5.21110 5.22415 5.33948 5.42234 5.49151 5.52647 5.94200 6.00861 6.17854 6.43407 6.93991 7.10634 7.61811 8.56908 9.28196 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003670 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.236382 B = 7626.714027 C = 9673.929906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.384 6.384 3 C 0.085 3.915 4 H 0.098 0.902 5 C 0.513 3.487 6 O -0.570 6.570 7 N -0.714 5.714 8 C 0.134 3.866 9 C 0.059 3.941 10 H 0.070 0.930 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.075 3.925 14 C 0.152 3.848 15 N -0.638 5.638 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.061 4.061 19 N -0.950 5.950 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.272 1.272 24 C 0.125 3.875 25 O -0.360 6.360 26 C -0.125 4.125 27 C -0.146 4.146 28 C -0.134 4.134 29 C -0.126 4.126 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.248 0.752 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -14.919 -4.745 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.302 6.302 3 C 0.024 3.976 4 H 0.116 0.884 5 C 0.299 3.701 6 O -0.449 6.449 7 N -0.367 5.367 8 C 0.010 3.990 9 C 0.001 3.999 10 H 0.088 0.912 11 C -0.172 4.172 12 C -0.171 4.171 13 C 0.035 3.965 14 C 0.027 3.973 15 N -0.364 5.364 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.254 4.254 19 N -0.599 5.599 20 Si 0.803 3.197 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.197 1.197 24 C 0.000 4.000 25 O -0.279 6.279 26 C -0.144 4.144 27 C -0.183 4.183 28 C -0.172 4.172 29 C -0.163 4.163 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.246 0.754 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.260 -15.660 -4.528 16.350 hybrid contribution -0.808 1.732 -0.209 1.923 sum -2.069 -13.928 -4.737 14.856 Atomic orbital electron populations 1.23305 0.78938 1.04428 1.01605 1.87970 1.21701 1.25494 1.95077 1.22016 0.92250 0.86948 0.96396 0.88418 1.20847 0.86921 0.83454 0.78832 1.90664 1.70603 1.31190 1.52489 1.45962 1.22014 1.09661 1.59046 1.21486 0.84511 0.95204 0.97771 1.23373 0.91586 0.90396 0.94494 0.91204 1.22899 0.95304 0.99023 0.99995 1.22700 0.95317 0.97084 1.01967 1.23354 0.89837 0.87619 0.95736 1.22527 0.90394 0.89629 0.94783 1.46269 1.34194 1.44859 1.11117 1.19369 1.06778 1.12523 0.97681 0.90413 1.25515 1.01989 1.02222 0.95720 1.69991 1.42493 1.44942 1.02443 0.85145 0.78974 0.78914 0.76698 1.21383 1.21764 1.19662 1.22730 0.96534 0.88452 0.92253 1.88992 1.36405 1.39119 1.63407 1.22997 1.01058 0.97021 0.93296 1.23064 1.01558 0.94066 0.99659 1.22778 0.99524 0.97962 0.96918 1.22989 0.95949 0.98442 0.98897 0.93463 0.91232 0.88112 0.75425 0.91476 0.88692 0.88721 0.88147 0.88871 0.89376 0.95247 0.93944 0.94294 0.93313 0.91196 0.88964 0.89796 0.91243 0.89392 0.90585 0.90156 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 10.57 113.37 1.20 1.41 16 2 O -0.38 -9.95 9.84 -129.99 -1.28 -11.23 16 3 C 0.09 2.05 2.46 29.85 0.07 2.12 16 4 H 0.10 2.10 7.59 -2.39 -0.02 2.08 16 5 C 0.51 15.35 7.18 87.66 0.63 15.98 16 6 O -0.57 -21.37 16.51 15.96 0.26 -21.11 16 7 N -0.71 -19.53 5.46 -463.06 -2.53 -22.06 16 8 C 0.13 3.46 5.27 86.38 0.46 3.92 16 9 C 0.06 1.62 3.33 31.12 0.10 1.72 16 10 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 11 C -0.13 -2.84 6.65 31.72 0.21 -2.63 16 12 C -0.13 -3.35 6.49 31.34 0.20 -3.15 16 13 C 0.08 2.74 1.28 -10.66 -0.01 2.73 16 14 C 0.15 7.07 6.99 86.10 0.60 7.67 16 15 N -0.64 -33.03 3.71 -740.98 -2.75 -35.78 16 16 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 19 N -0.95 -56.42 11.40 21.65 0.25 -56.17 16 20 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.13 5.07 8.47 86.09 0.73 5.80 16 25 O -0.36 -13.20 11.13 -148.98 -1.66 -14.86 16 26 C -0.12 -2.50 3.33 -10.26 -0.03 -2.53 16 27 C -0.15 -2.90 6.28 31.12 0.20 -2.70 16 28 C -0.13 -2.21 8.08 31.12 0.25 -1.96 16 29 C -0.13 -1.96 6.18 31.12 0.19 -1.76 16 30 H 0.05 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.07 0.91 4.95 -2.39 -0.01 0.90 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 11.00 7.14 -92.71 -0.66 10.34 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 1.68 7.87 -2.39 -0.02 1.66 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 39 H 0.09 2.09 7.84 -2.38 -0.02 2.08 16 40 H 0.03 1.38 7.96 -2.39 -0.02 1.36 16 41 H 0.04 2.23 7.20 -2.39 -0.02 2.22 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 1.75 7.96 -2.39 -0.02 1.73 16 47 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.09 1.28 6.33 -2.39 -0.02 1.27 16 Total: -1.00 -75.32 402.55 0.74 -74.58 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.26 Total: 27.95 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.16 Total: 11.13 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.03 Total: -114.01 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.67 Total: -47.20 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.32 0.74 -74.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700205094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.397 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds