Wall clock time and date at job start Tue Mar 31 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00029 * 2 1 4 4 H 1.08997 * 109.47102 * 29.99847 * 3 2 1 5 5 C 1.50697 * 109.46951 * 150.00227 * 3 2 1 6 6 O 1.21282 * 120.00369 * 4.99751 * 5 3 2 7 7 N 1.34774 * 119.99835 * 184.99780 * 5 3 2 8 8 C 1.46499 * 120.00028 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.47078 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.82498 * 59.44209 * 9 8 7 11 11 C 1.54482 * 109.82991 * 180.42192 * 9 8 7 12 12 C 1.55511 * 102.38328 * 140.88038 * 11 9 8 13 13 C 1.53882 * 100.75875 * 327.02683 * 12 11 9 14 14 C 1.52378 * 115.68036 * 263.23937 * 13 12 11 15 15 N 1.47279 * 87.70124 * 218.74709 * 14 13 12 16 16 C 1.36939 * 135.93248 * 206.14202 * 15 14 13 17 17 H 1.07996 * 119.99885 * 7.80140 * 16 15 14 18 18 C 1.38809 * 119.99898 * 187.79359 * 16 15 14 19 19 N 1.31620 * 120.00135 * 195.39501 * 18 16 15 20 20 Si 1.86805 * 119.99821 * 15.39783 * 18 16 15 21 21 H 1.48499 * 109.46906 * 269.99597 * 20 18 16 22 22 H 1.48495 * 109.47290 * 29.99769 * 20 18 16 23 23 H 1.48501 * 109.47005 * 149.99956 * 20 18 16 24 24 C 1.47267 * 88.13025 * 26.39877 * 15 14 13 25 25 O 1.42408 * 106.67050 * 34.97891 * 13 12 11 26 26 C 1.53003 * 109.46971 * 270.00349 * 3 2 1 27 27 C 1.53780 * 113.61406 * 159.14014 * 26 3 2 28 28 C 1.53960 * 87.01808 * 220.04587 * 27 26 3 29 29 C 1.53775 * 113.61503 * 61.52827 * 26 3 2 30 30 H 1.09005 * 109.46693 * 299.99618 * 1 2 3 31 31 H 1.08994 * 109.47061 * 60.00030 * 1 2 3 32 32 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00077 * 0.02562 * 7 5 3 34 34 H 1.08996 * 109.47205 * 60.00451 * 8 7 5 35 35 H 1.08998 * 109.47060 * 300.00184 * 8 7 5 36 36 H 1.09002 * 110.82269 * 259.10051 * 11 9 8 37 37 H 1.08997 * 110.82594 * 22.45746 * 11 9 8 38 38 H 1.09007 * 111.15374 * 209.15747 * 12 11 9 39 39 H 1.09000 * 111.16303 * 84.90295 * 12 11 9 40 40 H 1.09001 * 113.51811 * 104.04127 * 14 13 12 41 41 H 1.09004 * 113.57289 * 333.45579 * 14 13 12 42 42 H 0.97000 * 120.00082 * 354.91676 * 19 18 16 43 43 H 1.08996 * 113.51528 * 88.30762 * 24 15 14 44 44 H 1.09004 * 113.51680 * 218.89773 * 24 15 14 45 45 H 1.09009 * 112.84400 * 290.33022 * 26 3 2 46 46 H 1.09005 * 113.61073 * 334.56248 * 27 26 3 47 47 H 1.08994 * 113.61689 * 105.46361 * 27 26 3 48 48 H 1.09004 * 113.53320 * 270.81168 * 28 27 26 49 49 H 1.08994 * 113.74448 * 139.94081 * 28 27 26 50 50 H 1.09000 * 113.61575 * 254.52661 * 29 26 3 51 51 H 1.08996 * 113.61512 * 25.34740 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3387 1.2638 0.7104 6 8 3.7897 0.2045 1.0914 7 7 4.0255 2.4039 0.9223 8 6 5.3166 2.3636 1.6133 9 6 5.8806 3.7816 1.7235 10 1 5.1863 4.4136 2.2770 11 6 7.2478 3.7474 2.4420 12 6 8.0694 4.8007 1.6457 13 6 7.4749 4.6239 0.2374 14 6 8.2606 3.7174 -0.7020 15 7 7.9377 4.6603 -1.7863 16 6 7.8059 4.5870 -3.1473 17 1 7.8306 3.6269 -3.6413 18 6 7.6404 5.7466 -3.8921 19 7 7.2153 5.6750 -5.1357 20 14 8.0210 7.4088 -3.1293 21 1 6.7986 7.9473 -2.4806 22 1 9.0930 7.2535 -2.1136 23 1 8.4739 8.3470 -4.1876 24 6 7.8248 5.7179 -0.7677 25 8 6.0936 4.3243 0.4117 26 6 2.2176 1.7714 -1.4425 27 6 2.3477 3.2971 -1.5844 28 6 1.4919 3.1709 -2.8580 29 6 0.9120 1.8842 -2.2471 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.6646 3.2513 0.6179 34 1 6.0104 1.7390 1.0508 35 1 5.1814 1.9481 2.6119 36 1 7.1447 4.0447 3.4856 37 1 7.7013 2.7592 2.3653 38 1 9.1326 4.5606 1.6569 39 1 7.8911 5.8071 2.0246 40 1 7.8113 2.7331 -0.8335 41 1 9.3248 3.6681 -0.4714 42 1 7.0882 4.8100 -5.5558 43 1 8.7691 6.2186 -0.5542 44 1 7.0087 6.4161 -0.9542 45 1 3.0017 1.2165 -1.9579 46 1 1.8598 3.8532 -0.7839 47 1 3.3672 3.6327 -1.7738 48 1 2.0780 2.9999 -3.7610 49 1 0.7580 3.9682 -2.9744 50 1 0.7743 1.0809 -2.9709 51 1 0.0307 2.0519 -1.6281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700205096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:24 Heat of formation + Delta-G solvation = -36.434921 kcal Electronic energy + Delta-G solvation = -31354.455321 eV Core-core repulsion = 27257.224604 eV Total energy + Delta-G solvation = -4097.230717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.58259 -40.14938 -38.50844 -37.11657 -36.74360 -34.42093 -32.36644 -32.10140 -30.52020 -29.03168 -27.02802 -26.53089 -25.62309 -25.44116 -24.24325 -23.11768 -21.56207 -21.09926 -20.32392 -19.59587 -19.29937 -17.60669 -17.39985 -17.01192 -16.71039 -16.22480 -15.73475 -15.61538 -15.11122 -14.92076 -14.75117 -14.28076 -14.10493 -13.78411 -13.71521 -13.40162 -13.28829 -13.05317 -12.93720 -12.62184 -12.51792 -12.16831 -12.13753 -11.98151 -11.75839 -11.63065 -11.59246 -11.38586 -11.03153 -10.82835 -10.69250 -10.54443 -10.40464 -10.39738 -10.16532 -9.95338 -9.73338 -9.30988 -9.24673 -9.05493 -8.91422 -8.67130 -7.14965 -6.26713 -3.17189 2.60711 2.83611 3.41696 3.46888 3.62317 3.71823 3.91263 4.37353 4.47085 4.54021 4.59854 4.61853 4.64309 4.73204 4.75333 4.84425 4.92206 4.95255 5.00480 5.07709 5.14631 5.20250 5.26055 5.34545 5.43113 5.47160 5.52600 5.56128 5.57492 5.66215 5.69937 5.81055 5.87819 5.90497 5.95062 6.06834 6.07879 6.13130 6.17112 6.26841 6.31707 6.40210 6.41124 6.42930 6.55849 6.86774 7.15347 7.45667 7.52553 8.24588 8.27783 9.01420 9.54777 10.40571 11.23413 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.004006 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.891079 B = 6987.264425 C = 8940.289797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.356 6.356 3 C 0.085 3.915 4 H 0.083 0.917 5 C 0.516 3.484 6 O -0.528 6.528 7 N -0.716 5.716 8 C 0.114 3.886 9 C 0.064 3.936 10 H 0.084 0.916 11 C -0.144 4.144 12 C -0.139 4.139 13 C 0.072 3.928 14 C 0.105 3.895 15 N -0.616 5.616 16 C -0.299 4.299 17 H 0.080 0.920 18 C -0.023 4.023 19 N -0.933 5.933 20 Si 1.062 2.938 21 H -0.293 1.293 22 H -0.283 1.283 23 H -0.296 1.296 24 C 0.108 3.892 25 O -0.331 6.331 26 C -0.128 4.128 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.134 4.134 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.405 0.595 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 -3.906 16.336 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.274 6.274 3 C 0.024 3.976 4 H 0.101 0.899 5 C 0.301 3.699 6 O -0.403 6.403 7 N -0.370 5.370 8 C -0.010 4.010 9 C 0.006 3.994 10 H 0.102 0.898 11 C -0.182 4.182 12 C -0.177 4.177 13 C 0.031 3.969 14 C -0.021 4.021 15 N -0.343 5.343 16 C -0.426 4.426 17 H 0.098 0.902 18 C -0.222 4.222 19 N -0.576 5.576 20 Si 0.894 3.106 21 H -0.221 1.221 22 H -0.210 1.210 23 H -0.223 1.223 24 C -0.018 4.018 25 O -0.249 6.249 26 C -0.147 4.147 27 C -0.179 4.179 28 C -0.174 4.174 29 C -0.172 4.172 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.241 0.759 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.809 -3.235 15.882 19.482 hybrid contribution -0.035 -1.142 0.199 1.160 sum -10.844 -4.377 16.081 19.884 Atomic orbital electron populations 1.23054 0.80973 1.03165 1.00344 1.88028 1.19409 1.25047 1.94877 1.21968 0.93233 0.86593 0.95819 0.89894 1.20342 0.86297 0.84013 0.79285 1.90701 1.69540 1.29747 1.50331 1.45801 1.21501 1.09735 1.59965 1.21799 0.84765 0.97050 0.97383 1.23084 0.97411 0.93283 0.85662 0.89810 1.23065 0.94457 1.00815 0.99839 1.23001 1.00619 0.99413 0.94698 1.23127 0.82030 0.98893 0.92826 1.22729 0.96239 0.95397 0.87768 1.46089 1.81283 1.05225 1.01723 1.20094 1.48383 0.95505 0.78568 0.90227 1.25723 0.98837 1.01668 0.96001 1.70892 1.45906 1.27142 1.13612 0.83782 0.76506 0.75901 0.74448 1.22078 1.20971 1.22326 1.22746 0.98752 0.93178 0.87120 1.88362 1.23920 1.81978 1.30671 1.23048 1.00037 0.97580 0.94037 1.23044 1.02376 0.94073 0.98402 1.22792 0.99271 0.97390 0.97933 1.22988 0.96226 0.98730 0.99214 0.94158 0.92944 0.89374 0.75922 0.90844 0.90713 0.90003 0.90077 0.89584 0.90160 0.93348 0.93892 0.92928 0.92475 0.92285 0.87985 0.90173 0.89487 0.89609 0.91224 0.91100 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.58 101.05 1.07 1.26 16 2 O -0.36 -4.82 9.85 -55.09 -0.54 -5.36 16 3 C 0.09 1.05 2.44 -27.88 -0.07 0.98 16 4 H 0.08 0.80 7.62 -51.93 -0.40 0.40 16 5 C 0.52 7.74 7.18 -10.99 -0.08 7.66 16 6 O -0.53 -10.01 16.51 -14.30 -0.24 -10.25 16 7 N -0.72 -9.41 5.36 -60.30 -0.32 -9.73 16 8 C 0.11 1.45 5.23 -4.04 -0.02 1.43 16 9 C 0.06 0.77 3.62 -25.95 -0.09 0.67 16 10 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.14 -1.45 6.56 -24.62 -0.16 -1.61 16 12 C -0.14 -1.67 6.49 -24.94 -0.16 -1.83 16 13 C 0.07 1.23 1.56 -90.68 -0.14 1.09 16 14 C 0.11 2.11 8.24 -7.87 -0.06 2.04 16 15 N -0.62 -15.31 3.63 -184.82 -0.67 -15.98 16 16 C -0.30 -8.74 11.03 -15.06 -0.17 -8.91 16 17 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 18 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 19 N -0.93 -29.60 13.70 55.49 0.76 -28.83 16 20 Si 1.06 26.59 25.51 -169.99 -4.34 22.25 16 21 H -0.29 -7.05 6.97 56.52 0.39 -6.66 16 22 H -0.28 -6.49 5.64 56.52 0.32 -6.17 16 23 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 24 C 0.11 2.25 5.17 -7.75 -0.04 2.21 16 25 O -0.33 -5.56 10.69 -35.23 -0.38 -5.93 16 26 C -0.13 -1.57 3.32 -89.81 -0.30 -1.87 16 27 C -0.14 -1.69 6.19 -25.82 -0.16 -1.85 16 28 C -0.14 -1.55 8.09 -25.82 -0.21 -1.76 16 29 C -0.13 -1.36 6.14 -25.92 -0.16 -1.52 16 30 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.05 0.40 5.04 -51.93 -0.26 0.14 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.41 4.81 6.98 -40.82 -0.28 4.52 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 38 H 0.09 0.95 7.93 -51.93 -0.41 0.53 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.79 7.99 -51.93 -0.41 0.38 16 42 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 43 H 0.06 1.13 6.96 -51.93 -0.36 0.77 16 44 H 0.06 1.30 6.31 -51.93 -0.33 0.97 16 45 H 0.10 1.50 8.14 -51.92 -0.42 1.07 16 46 H 0.08 0.78 7.98 -51.93 -0.41 0.36 16 47 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.08 0.67 6.48 -51.93 -0.34 0.33 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -36.39 396.01 -9.38 -45.78 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.77 Total: 4.88 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.85 Total: -2.78 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.23 Total: -54.55 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.16 Total: -21.54 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.34 Total: 22.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.39 -9.38 -45.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700205096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds