Wall clock time and date at job start Tue Mar 31 2020 21:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 119.99894 * 2 1 4 4 H 1.08001 * 119.99696 * 200.36283 * 3 2 1 5 5 C 1.38813 * 119.99948 * 20.36473 * 3 2 1 6 6 N 1.31615 * 119.99905 * 14.99400 * 5 3 2 7 7 Si 1.86798 * 119.99897 * 194.99409 * 5 3 2 8 8 H 1.48507 * 109.46987 * 84.99913 * 7 5 3 9 9 H 1.48495 * 109.47203 * 205.00146 * 7 5 3 10 10 H 1.48499 * 109.47054 * 325.00290 * 7 5 3 11 11 C 1.46500 * 120.00101 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47053 * 270.00134 * 11 2 1 13 13 O 1.42896 * 109.46809 * 65.00139 * 12 11 2 14 14 C 1.42907 * 113.99425 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46838 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46984 * 65.00047 * 15 14 13 17 17 C 1.46499 * 119.99805 * 270.00355 * 16 15 14 18 18 C 1.34774 * 119.99662 * 89.99863 * 16 15 14 19 19 O 1.21276 * 120.00435 * 359.97438 * 18 16 15 20 20 C 1.50706 * 119.99591 * 179.97438 * 18 16 15 21 21 H 1.09000 * 110.81029 * 56.68678 * 20 18 16 22 22 C 1.58910 * 110.16412 * 291.26816 * 20 18 16 23 23 C 1.55822 * 103.76219 * 240.91260 * 22 20 18 24 24 H 1.09007 * 115.93420 * 160.95977 * 23 22 20 25 25 O 1.47962 * 99.54567 * 33.58010 * 23 22 20 26 26 C 1.46530 * 100.62249 * 305.06497 * 25 23 22 27 27 H 1.09006 * 115.68268 * 180.87823 * 26 25 23 28 28 C 1.55827 * 101.24382 * 306.37227 * 26 25 23 29 29 H 1.08998 * 118.71367 * 172.20949 * 28 26 25 30 30 C 1.53000 * 117.23944 * 330.28347 * 28 26 25 31 31 C 1.52997 * 60.75673 * 89.17207 * 30 28 26 32 32 H 1.09005 * 120.22189 * 113.09602 * 31 30 28 33 33 H 1.08994 * 109.47071 * 275.10583 * 1 2 3 34 34 H 1.09003 * 109.47038 * 35.10757 * 1 2 3 35 35 H 1.09007 * 109.46936 * 155.10397 * 1 2 3 36 36 H 0.97000 * 119.99891 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47167 * 150.00196 * 11 2 1 38 38 H 1.08998 * 109.46948 * 30.00553 * 11 2 1 39 39 H 1.09000 * 109.47190 * 304.99919 * 12 11 2 40 40 H 1.09005 * 109.46786 * 185.00381 * 12 11 2 41 41 H 1.08998 * 109.47257 * 60.00065 * 14 13 12 42 42 H 1.08999 * 109.47350 * 299.99736 * 14 13 12 43 43 H 1.09001 * 109.47160 * 305.00218 * 15 14 13 44 44 H 1.08994 * 109.46943 * 184.99705 * 15 14 13 45 45 H 1.09009 * 109.46516 * 269.99470 * 17 16 15 46 46 H 1.08996 * 109.47650 * 29.99587 * 17 16 15 47 47 H 1.09000 * 109.47246 * 150.00419 * 17 16 15 48 48 H 1.08997 * 108.12194 * 123.27143 * 22 20 18 49 49 H 1.09005 * 112.58100 * 0.70152 * 22 20 18 50 50 H 1.08995 * 117.41192 * 341.47506 * 30 28 26 51 51 H 1.09002 * 117.40927 * 196.87669 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1791 1.2152 -0.3255 5 6 1.5206 2.3505 0.4183 6 7 0.3876 2.2836 1.0847 7 14 2.2823 4.0127 0.0355 8 1 1.8679 4.4459 -1.3231 9 1 1.8222 5.0100 1.0350 10 1 3.7622 3.9034 0.0903 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 8 1.2060 -1.9926 2.0822 14 6 1.3324 -2.4160 3.4412 15 6 -0.0567 -2.6888 4.0217 16 7 -0.6663 -3.8202 3.3183 17 6 -1.4804 -3.5869 2.1230 18 6 -0.4779 -5.0756 3.7710 19 8 0.1965 -5.2688 4.7603 20 6 -1.1054 -6.2394 3.0478 21 1 -0.7971 -6.2576 2.0025 22 6 -2.6847 -6.2048 3.2210 23 6 -3.0071 -7.5438 3.9499 24 1 -3.9727 -7.5920 4.4534 25 8 -1.7894 -7.6702 4.7809 26 6 -0.7499 -7.5833 3.7518 27 1 0.2766 -7.6665 4.1089 28 6 -1.2061 -8.6989 2.7641 29 1 -0.6907 -8.7951 1.8085 30 6 -1.9628 -9.8904 3.3546 31 6 -2.7476 -8.6602 2.8944 32 1 -3.4201 -8.7268 2.0391 33 1 -0.3633 0.0915 1.0235 34 1 -0.3633 0.8407 -0.5910 35 1 -0.3633 -0.9322 -0.4326 36 1 -0.0521 3.0974 1.3767 37 1 3.1499 -1.1386 -0.5133 38 1 1.6085 -2.0285 -0.5130 39 1 2.9642 -0.9122 1.9820 40 1 3.0733 -2.6057 1.4449 41 1 1.8211 -1.6334 4.0216 42 1 1.9297 -3.3268 3.4840 43 1 -0.6821 -1.8047 3.8983 44 1 0.0327 -2.9256 5.0818 45 1 -2.5209 -3.4429 2.4146 46 1 -1.1212 -2.6968 1.6067 47 1 -1.4053 -4.4477 1.4585 48 1 -3.1344 -6.1876 2.2283 49 1 -3.0225 -5.3529 3.8112 50 1 -1.8763 -10.0576 4.4281 51 1 -2.0369 -10.7903 2.7440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707232090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:05 Heat of formation + Delta-G solvation = -37.233211 kcal Electronic energy + Delta-G solvation = -30773.524801 eV Core-core repulsion = 26676.259467 eV Total energy + Delta-G solvation = -4097.265333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.71217 -39.49541 -37.46100 -35.63313 -34.94531 -34.53280 -32.40110 -31.43967 -29.97873 -29.57845 -27.97823 -26.42440 -25.73358 -24.67781 -23.32411 -22.94863 -22.03574 -20.73001 -20.33228 -20.23640 -18.95747 -17.45903 -17.06264 -16.74228 -16.47971 -16.10131 -15.64562 -15.29100 -15.17946 -14.65640 -14.56152 -14.15343 -13.90079 -13.48122 -13.29776 -13.04133 -12.94238 -12.84874 -12.71274 -12.37274 -12.26682 -11.98462 -11.91368 -11.82954 -11.57951 -11.44516 -11.38187 -11.32225 -10.93734 -10.83265 -10.74407 -10.54918 -10.49737 -10.24556 -10.08678 -10.02527 -9.91988 -9.79394 -9.63575 -8.91093 -8.55984 -8.48053 -6.70479 -5.66896 -3.10073 2.62238 2.93624 3.24427 3.40041 3.43641 3.46331 3.47137 4.14446 4.16797 4.23655 4.30437 4.41530 4.48123 4.54494 4.65332 4.78401 4.86353 4.99938 5.16698 5.25627 5.30581 5.34849 5.42909 5.43093 5.45255 5.49105 5.51826 5.56749 5.63338 5.66641 5.72726 5.78260 5.83152 5.89063 5.98832 6.01326 6.14216 6.20610 6.21874 6.27457 6.56844 6.59434 6.78236 6.89471 7.44031 7.47548 7.81199 7.88317 7.93375 8.20755 8.44102 9.29578 9.93956 10.43302 11.37515 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.002283 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.950259 B =12260.130822 C =12309.043782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.903 5.903 7 Si 0.901 3.099 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.154 3.846 12 C 0.044 3.956 13 O -0.367 6.367 14 C 0.049 3.951 15 C 0.121 3.879 16 N -0.602 5.602 17 C 0.079 3.921 18 C 0.522 3.478 19 O -0.541 6.541 20 C -0.133 4.133 21 H 0.112 0.888 22 C -0.127 4.127 23 C 0.089 3.911 24 H 0.138 0.862 25 O -0.367 6.367 26 C 0.119 3.881 27 H 0.137 0.863 28 C -0.197 4.197 29 H 0.124 0.876 30 C -0.135 4.135 31 C -0.198 4.198 32 H 0.122 0.878 33 H 0.032 0.968 34 H 0.035 0.965 35 H -0.007 1.007 36 H 0.250 0.750 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.022 0.978 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.100 0.900 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.656 -21.903 2.764 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.548 5.548 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.026 3.974 12 C -0.036 4.036 13 O -0.286 6.286 14 C -0.029 4.029 15 C -0.002 4.002 16 N -0.334 5.334 17 C -0.064 4.064 18 C 0.310 3.690 19 O -0.418 6.418 20 C -0.154 4.154 21 H 0.130 0.870 22 C -0.165 4.165 23 C 0.032 3.968 24 H 0.156 0.844 25 O -0.285 6.285 26 C 0.061 3.939 27 H 0.154 0.846 28 C -0.215 4.215 29 H 0.142 0.858 30 C -0.171 4.171 31 C -0.216 4.216 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.012 0.988 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.119 0.881 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.580 -21.821 3.486 23.362 hybrid contribution 0.672 1.122 -0.388 1.364 sum -6.907 -20.699 3.098 22.040 Atomic orbital electron populations 1.20683 0.82264 0.94630 0.99387 1.43904 1.02124 1.00253 1.85591 1.19204 0.96939 0.85153 1.37153 0.91524 1.24947 0.97958 0.98185 0.98664 1.70102 1.18753 1.26496 1.39462 0.86323 0.78583 0.84324 0.77587 1.21554 1.21852 1.20707 1.20873 0.96345 0.88737 0.91446 1.23452 0.85361 0.96726 0.98017 1.87917 1.30185 1.87269 1.23196 1.22754 0.96776 0.97918 0.85469 1.21549 0.93657 0.88624 0.96356 1.47733 1.50918 1.05894 1.28867 1.21907 0.94177 1.03699 0.86609 1.20283 0.80485 0.83745 0.84518 1.90686 1.40050 1.84751 1.26305 1.23607 0.96568 0.94038 1.01201 0.87023 1.23766 0.92703 0.98325 1.01699 1.24486 0.91000 0.92234 0.89091 0.84444 1.90292 1.15254 1.93967 1.29018 1.23916 0.94232 0.90132 0.85624 0.84572 1.24311 0.95042 0.99990 1.02138 0.85839 1.22813 1.00594 0.91455 1.02278 1.24262 0.95296 0.99547 1.02523 0.86037 0.94927 0.94627 0.98797 0.93940 0.92494 0.93930 0.93504 0.96023 0.92954 0.94180 0.89249 0.89032 0.92999 0.88915 0.91692 0.89905 0.89763 0.88149 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.31 8.62 59.85 0.52 4.82 16 2 N -0.60 -14.96 2.89 -181.12 -0.52 -15.49 16 3 C -0.25 -6.99 9.68 -15.06 -0.15 -7.13 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16 5 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 6 N -0.90 -26.27 10.67 55.49 0.59 -25.67 16 7 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.16 6.11 -4.04 -0.02 3.13 16 12 C 0.04 0.85 6.28 37.16 0.23 1.08 16 13 O -0.37 -6.98 8.72 -35.23 -0.31 -7.29 16 14 C 0.05 0.81 6.28 37.16 0.23 1.04 16 15 C 0.12 1.77 5.81 -4.04 -0.02 1.75 16 16 N -0.60 -8.07 2.84 -181.56 -0.52 -8.59 16 17 C 0.08 0.89 9.28 59.85 0.56 1.45 16 18 C 0.52 7.23 6.94 -10.98 -0.08 7.15 16 19 O -0.54 -9.37 15.50 5.56 0.09 -9.28 16 20 C -0.13 -1.36 2.06 -86.98 -0.18 -1.54 16 21 H 0.11 0.98 7.16 -51.93 -0.37 0.61 16 22 C -0.13 -1.07 5.09 -21.94 -0.11 -1.18 16 23 C 0.09 0.76 5.85 -23.72 -0.14 0.62 16 24 H 0.14 0.91 8.14 -51.92 -0.42 0.49 16 25 O -0.37 -4.51 10.74 -35.23 -0.38 -4.89 16 26 C 0.12 1.28 4.49 -23.72 -0.11 1.18 16 27 H 0.14 1.59 7.80 -51.93 -0.41 1.19 16 28 C -0.20 -1.60 6.62 -88.19 -0.58 -2.18 16 29 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 30 C -0.13 -1.01 9.81 -26.73 -0.26 -1.27 16 31 C -0.20 -1.45 6.55 -88.20 -0.58 -2.02 16 32 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.87 7.40 -51.93 -0.38 0.48 16 34 H 0.03 0.94 7.21 -51.93 -0.37 0.57 16 35 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 38 H 0.04 0.81 7.86 -51.93 -0.41 0.40 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 45 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 46 H 0.09 1.29 7.11 -51.93 -0.37 0.92 16 47 H 0.06 0.61 6.32 -51.93 -0.33 0.28 16 48 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 49 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 50 H 0.10 0.87 7.65 -51.93 -0.40 0.47 16 51 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -33.30 402.05 -9.64 -42.95 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.85 Total: -1.50 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -0.78 Total: 6.83 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.45 Total: -49.75 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.60 Total: -21.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.30 -9.64 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707232090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.713 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds