Wall clock time and date at job start Tue Mar 31 2020 21:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99814 * 2 1 4 4 O 1.20827 * 120.00208 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00084 * 180.02562 * 3 2 1 6 6 H 1.08995 * 115.54869 * 325.67195 * 5 3 2 7 7 C 1.52994 * 117.49879 * 111.37950 * 5 3 2 8 8 C 1.53004 * 60.00216 * 107.48902 * 7 5 3 9 9 H 1.09001 * 117.52006 * 252.51818 * 8 7 5 10 10 C 1.50696 * 117.49693 * 107.48618 * 8 7 5 11 11 O 1.21279 * 120.00141 * 291.38088 * 10 8 7 12 12 N 1.34781 * 119.99835 * 111.38142 * 10 8 7 13 13 C 1.46931 * 120.62972 * 179.97438 * 12 10 8 14 14 C 1.53187 * 108.77850 * 233.63156 * 13 12 10 15 15 C 1.53044 * 109.31062 * 305.36936 * 14 13 12 16 16 C 1.53001 * 109.45617 * 181.38358 * 15 14 13 17 17 C 1.53006 * 109.47044 * 174.97379 * 16 15 14 18 18 N 1.46499 * 109.47091 * 180.02562 * 17 16 15 19 19 C 1.46496 * 119.99848 * 269.99796 * 18 17 16 20 20 C 1.36939 * 120.00179 * 90.00020 * 18 17 16 21 21 H 1.08005 * 119.99607 * 336.22569 * 20 18 17 22 22 C 1.38810 * 119.99938 * 156.22787 * 20 18 17 23 23 N 1.31612 * 120.00537 * 330.46892 * 22 20 18 24 24 Si 1.86804 * 119.99834 * 150.46780 * 22 20 18 25 25 H 1.48494 * 109.47419 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47242 * 300.00099 * 24 22 20 27 27 H 1.48505 * 109.46855 * 59.99892 * 24 22 20 28 28 C 1.53040 * 109.52682 * 61.37367 * 15 14 13 29 29 C 1.46922 * 120.63102 * 0.02562 * 12 10 8 30 30 H 1.08997 * 109.47339 * 59.99956 * 1 2 3 31 31 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47069 * 299.99584 * 1 2 3 33 33 H 1.09005 * 117.50128 * 0.02562 * 7 5 3 34 34 H 1.09002 * 117.50036 * 214.97454 * 7 5 3 35 35 H 1.09003 * 109.57974 * 113.84494 * 13 12 10 36 36 H 1.08999 * 109.70190 * 353.49408 * 13 12 10 37 37 H 1.08997 * 109.49673 * 185.41583 * 14 13 12 38 38 H 1.09001 * 109.52278 * 65.33612 * 14 13 12 39 39 H 1.08997 * 109.46080 * 301.35147 * 15 14 13 40 40 H 1.08999 * 109.47225 * 54.97403 * 16 15 14 41 41 H 1.08997 * 109.47481 * 294.97373 * 16 15 14 42 42 H 1.08999 * 109.47090 * 59.99941 * 17 16 15 43 43 H 1.09000 * 109.46571 * 299.99656 * 17 16 15 44 44 H 1.09001 * 109.47066 * 272.98697 * 19 18 17 45 45 H 1.09000 * 109.47494 * 32.98892 * 19 18 17 46 46 H 1.08998 * 109.47352 * 152.99245 * 19 18 17 47 47 H 0.97002 * 119.99619 * 354.58600 * 23 22 20 48 48 H 1.09002 * 109.50041 * 58.57681 * 28 15 14 49 49 H 1.09001 * 109.49477 * 178.67486 * 28 15 14 50 50 H 1.09001 * 109.58740 * 246.15452 * 29 12 10 51 51 H 1.09003 * 109.58800 * 6.58299 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0785 0.4885 0.5536 7 6 4.2453 1.8063 -1.2644 8 6 4.2007 2.6673 -0.0005 9 1 3.5295 3.5262 0.0004 10 6 5.4861 2.8461 0.7654 11 8 5.9788 1.9055 1.3513 12 7 6.0883 4.0514 0.7991 13 6 7.3417 4.2415 1.5419 14 6 7.1653 5.4108 2.5157 15 6 6.6988 6.6468 1.7432 16 6 6.5547 7.8261 2.7073 17 6 6.2103 9.0909 1.9182 18 7 6.0729 10.2201 2.8413 19 6 4.7684 10.5288 3.4320 20 6 7.1640 10.9872 3.1520 21 1 8.1582 10.5767 3.0541 22 6 6.9921 12.2922 3.5928 23 7 5.9504 12.9901 3.1929 24 14 8.2394 13.0578 4.7536 25 1 7.8304 14.4494 5.0718 26 1 8.3042 12.2619 6.0056 27 1 9.5756 13.0710 4.1057 28 6 5.3477 6.3587 1.0847 29 6 5.5034 5.2005 0.0948 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.6035 2.0991 -2.0954 34 1 5.2046 1.3693 -1.5421 35 1 8.1492 4.4652 0.8447 36 1 7.5801 3.3352 2.0985 37 1 8.1162 5.6243 3.0039 38 1 6.4209 5.1494 3.2678 39 1 7.4320 6.8932 0.9752 40 1 7.4930 7.9754 3.2416 41 1 5.7592 7.6159 3.4222 42 1 5.2720 8.9416 1.3840 43 1 7.0060 9.3010 1.2035 44 1 4.2121 11.1843 2.7620 45 1 4.2100 9.6049 3.5828 46 1 4.9123 11.0269 4.3908 47 1 5.3454 12.6219 2.5301 48 1 4.6203 6.0879 1.8500 49 1 5.0048 7.2470 0.5542 50 1 6.1607 5.5026 -0.7206 51 1 4.5263 4.9264 -0.3032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715441030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:26 Heat of formation + Delta-G solvation = -81.052196 kcal Electronic energy + Delta-G solvation = -29456.404934 eV Core-core repulsion = 25357.239467 eV Total energy + Delta-G solvation = -4099.165467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.26216 -40.38086 -38.40256 -37.25131 -36.18274 -35.92409 -34.03460 -31.58041 -31.06552 -28.91920 -28.59739 -26.33485 -25.74829 -24.81474 -24.05879 -23.38186 -22.19574 -21.10072 -20.40872 -19.92420 -19.17089 -18.50895 -17.49003 -17.24491 -16.79815 -16.74110 -16.23901 -15.56322 -14.81566 -14.61569 -14.51043 -14.36856 -14.10353 -13.93154 -13.71928 -13.59550 -13.41724 -13.18179 -12.97779 -12.91697 -12.70243 -12.44042 -12.30601 -11.99121 -11.46723 -11.34769 -11.27853 -11.25919 -11.13834 -11.10881 -10.92584 -10.76451 -10.72606 -10.60057 -10.42104 -10.28497 -10.02303 -9.99266 -9.89806 -9.40549 -8.86163 -8.28046 -6.87390 -6.04117 -3.15811 1.56169 2.00335 2.22435 2.74407 3.28036 3.51051 3.55380 3.73032 3.98864 4.04921 4.17511 4.45162 4.56615 4.61863 4.66691 4.71068 4.75306 4.82131 4.84300 4.96044 5.03317 5.09575 5.15441 5.25126 5.35393 5.36666 5.40585 5.42107 5.56744 5.61158 5.69766 5.76218 5.85547 5.89191 6.03086 6.06444 6.16835 6.22798 6.31769 6.45371 6.49009 6.53771 6.81739 6.84752 7.07647 7.12377 7.12559 7.27995 7.86344 8.03138 8.60980 9.16975 9.90613 10.30852 11.23459 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.001970 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.698893 B =14213.018369 C =15140.790576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.493 3.507 4 O -0.503 6.503 5 C -0.138 4.138 6 H 0.150 0.850 7 C -0.113 4.113 8 C -0.158 4.158 9 H 0.142 0.858 10 C 0.546 3.454 11 O -0.543 6.543 12 N -0.600 5.600 13 C 0.112 3.888 14 C -0.128 4.128 15 C -0.084 4.084 16 C -0.130 4.130 17 C 0.153 3.847 18 N -0.607 5.607 19 C 0.136 3.864 20 C -0.356 4.356 21 H 0.056 0.944 22 C -0.023 4.023 23 N -0.912 5.912 24 Si 1.059 2.941 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.293 1.293 28 C -0.132 4.132 29 C 0.104 3.896 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.044 0.956 44 H 0.008 0.992 45 H 0.012 0.988 46 H 0.049 0.951 47 H 0.269 0.731 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -26.370 -10.337 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.336 3.664 4 O -0.390 6.390 5 C -0.158 4.158 6 H 0.168 0.832 7 C -0.151 4.151 8 C -0.179 4.179 9 H 0.160 0.840 10 C 0.334 3.666 11 O -0.421 6.421 12 N -0.333 5.333 13 C -0.010 4.010 14 C -0.167 4.167 15 C -0.104 4.104 16 C -0.170 4.170 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.009 4.009 20 C -0.485 4.485 21 H 0.074 0.926 22 C -0.226 4.226 23 N -0.552 5.552 24 Si 0.889 3.111 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.220 1.220 28 C -0.170 4.170 29 C -0.019 4.019 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.031 0.969 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.722 -25.167 -9.121 27.373 hybrid contribution -0.625 -1.191 -0.777 1.553 sum -6.347 -26.357 -9.898 28.861 Atomic orbital electron populations 1.23334 0.75774 1.03966 1.02809 1.86485 1.23712 1.32820 1.83881 1.22500 0.90224 0.81461 0.72180 1.90697 1.66817 1.36367 1.45161 1.21656 0.88444 0.99772 1.05903 0.83208 1.23103 1.02767 0.99097 0.90128 1.22387 0.98040 0.95557 1.01893 0.83999 1.19378 0.84350 0.82540 0.80375 1.90696 1.65809 1.39944 1.45644 1.48021 1.24995 1.09104 1.51163 1.21684 0.84726 0.99889 0.94706 1.21987 1.02366 0.94401 0.97914 1.21138 0.96293 0.94837 0.98100 1.22209 1.01798 0.94819 0.98198 1.20780 0.98071 0.87134 0.91399 1.43942 1.06649 1.32266 1.50229 1.20923 0.86669 0.95903 0.97425 1.19885 0.86863 0.95275 1.46487 0.92599 1.25743 1.02261 0.92403 1.02166 1.70787 1.17156 1.36704 1.30538 0.83620 0.74913 0.75997 0.76605 1.21180 1.22164 1.22024 1.22044 0.98469 0.97679 0.98841 1.21922 0.99050 0.85929 0.94975 0.91703 0.87809 0.91642 0.86764 0.86342 0.91296 0.89121 0.90509 0.91656 0.91173 0.92029 0.93025 0.94965 0.93718 0.97368 0.96895 0.93203 0.92004 0.91538 0.89884 0.90828 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.05 10.57 -39.26 -0.41 -3.47 16 3 C 0.49 4.83 7.74 36.01 0.28 5.11 16 4 O -0.50 -6.12 16.01 -18.75 -0.30 -6.42 16 5 C -0.14 -1.19 5.81 -91.77 -0.53 -1.72 16 6 H 0.15 1.31 7.67 -51.93 -0.40 0.91 16 7 C -0.11 -0.73 9.94 -26.73 -0.27 -1.00 16 8 C -0.16 -1.41 4.64 -91.77 -0.43 -1.83 16 9 H 0.14 1.25 6.09 -51.93 -0.32 0.93 16 10 C 0.55 6.21 7.48 -10.99 -0.08 6.12 16 11 O -0.54 -7.78 15.67 5.56 0.09 -7.69 16 12 N -0.60 -6.32 2.97 -172.79 -0.51 -6.83 16 13 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 14 C -0.13 -1.48 5.36 -26.61 -0.14 -1.63 16 15 C -0.08 -1.06 2.15 -90.58 -0.19 -1.26 16 16 C -0.13 -2.18 5.01 -26.73 -0.13 -2.32 16 17 C 0.15 3.06 5.44 -4.04 -0.02 3.04 16 18 N -0.61 -15.29 2.80 -181.12 -0.51 -15.80 16 19 C 0.14 3.30 8.99 59.84 0.54 3.84 16 20 C -0.36 -10.00 9.46 -15.06 -0.14 -10.14 16 21 H 0.06 1.57 7.98 -52.48 -0.42 1.15 16 22 C -0.02 -0.66 4.61 -17.43 -0.08 -0.74 16 23 N -0.91 -27.67 12.74 55.49 0.71 -26.96 16 24 Si 1.06 25.49 30.01 -169.99 -5.10 20.39 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 28 C -0.13 -1.47 5.14 -26.63 -0.14 -1.60 16 29 C 0.10 0.93 6.34 -3.73 -0.02 0.91 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.04 7.01 -51.93 -0.36 0.68 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.59 6.47 -51.93 -0.34 0.26 16 43 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 44 H 0.01 0.21 6.87 -51.93 -0.36 -0.15 16 45 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 46 H 0.05 1.30 7.27 -51.93 -0.38 0.93 16 47 H 0.27 8.21 6.37 -40.82 -0.26 7.95 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.09 0.64 5.51 -51.93 -0.29 0.36 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -34.58 406.88 -8.82 -43.40 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.58 Total: -1.97 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.32 Total: -0.78 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.31 Total: -49.59 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.63 Total: -17.58 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.10 Total: 20.39 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.58 -8.82 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715441030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.656 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds