Wall clock time and date at job start Tue Mar 31 2020 21:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99814 * 2 1 4 4 O 1.20827 * 120.00208 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00084 * 180.02562 * 3 2 1 6 6 H 1.08995 * 115.54869 * 325.67195 * 5 3 2 7 7 C 1.52994 * 117.49879 * 111.37950 * 5 3 2 8 8 C 1.53004 * 60.00216 * 107.48902 * 7 5 3 9 9 H 1.09001 * 117.52006 * 252.51818 * 8 7 5 10 10 C 1.50696 * 117.49693 * 107.48618 * 8 7 5 11 11 O 1.21279 * 120.00141 * 291.38088 * 10 8 7 12 12 N 1.34781 * 119.99835 * 111.38142 * 10 8 7 13 13 C 1.46931 * 120.62972 * 179.97438 * 12 10 8 14 14 C 1.53187 * 108.77850 * 233.63156 * 13 12 10 15 15 C 1.53044 * 109.31062 * 305.36936 * 14 13 12 16 16 C 1.53001 * 109.45617 * 181.38358 * 15 14 13 17 17 C 1.53006 * 109.47044 * 174.97379 * 16 15 14 18 18 N 1.46499 * 109.47091 * 180.02562 * 17 16 15 19 19 C 1.46496 * 119.99848 * 269.99796 * 18 17 16 20 20 C 1.36939 * 120.00179 * 90.00020 * 18 17 16 21 21 H 1.08005 * 119.99607 * 336.22569 * 20 18 17 22 22 C 1.38810 * 119.99938 * 156.22787 * 20 18 17 23 23 N 1.31612 * 120.00537 * 330.46892 * 22 20 18 24 24 Si 1.86804 * 119.99834 * 150.46780 * 22 20 18 25 25 H 1.48494 * 109.47419 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47242 * 300.00099 * 24 22 20 27 27 H 1.48505 * 109.46855 * 59.99892 * 24 22 20 28 28 C 1.53040 * 109.52682 * 61.37367 * 15 14 13 29 29 C 1.46922 * 120.63102 * 0.02562 * 12 10 8 30 30 H 1.08997 * 109.47339 * 59.99956 * 1 2 3 31 31 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47069 * 299.99584 * 1 2 3 33 33 H 1.09005 * 117.50128 * 0.02562 * 7 5 3 34 34 H 1.09002 * 117.50036 * 214.97454 * 7 5 3 35 35 H 1.09003 * 109.57974 * 113.84494 * 13 12 10 36 36 H 1.08999 * 109.70190 * 353.49408 * 13 12 10 37 37 H 1.08997 * 109.49673 * 185.41583 * 14 13 12 38 38 H 1.09001 * 109.52278 * 65.33612 * 14 13 12 39 39 H 1.08997 * 109.46080 * 301.35147 * 15 14 13 40 40 H 1.08999 * 109.47225 * 54.97403 * 16 15 14 41 41 H 1.08997 * 109.47481 * 294.97373 * 16 15 14 42 42 H 1.08999 * 109.47090 * 59.99941 * 17 16 15 43 43 H 1.09000 * 109.46571 * 299.99656 * 17 16 15 44 44 H 1.09001 * 109.47066 * 272.98697 * 19 18 17 45 45 H 1.09000 * 109.47494 * 32.98892 * 19 18 17 46 46 H 1.08998 * 109.47352 * 152.99245 * 19 18 17 47 47 H 0.97002 * 119.99619 * 354.58600 * 23 22 20 48 48 H 1.09002 * 109.50041 * 58.57681 * 28 15 14 49 49 H 1.09001 * 109.49477 * 178.67486 * 28 15 14 50 50 H 1.09001 * 109.58740 * 246.15452 * 29 12 10 51 51 H 1.09003 * 109.58800 * 6.58299 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0785 0.4885 0.5536 7 6 4.2453 1.8063 -1.2644 8 6 4.2007 2.6673 -0.0005 9 1 3.5295 3.5262 0.0004 10 6 5.4861 2.8461 0.7654 11 8 5.9788 1.9055 1.3513 12 7 6.0883 4.0514 0.7991 13 6 7.3417 4.2415 1.5419 14 6 7.1653 5.4108 2.5157 15 6 6.6988 6.6468 1.7432 16 6 6.5547 7.8261 2.7073 17 6 6.2103 9.0909 1.9182 18 7 6.0729 10.2201 2.8413 19 6 4.7684 10.5288 3.4320 20 6 7.1640 10.9872 3.1520 21 1 8.1582 10.5767 3.0541 22 6 6.9921 12.2922 3.5928 23 7 5.9504 12.9901 3.1929 24 14 8.2394 13.0578 4.7536 25 1 7.8304 14.4494 5.0718 26 1 8.3042 12.2619 6.0056 27 1 9.5756 13.0710 4.1057 28 6 5.3477 6.3587 1.0847 29 6 5.5034 5.2005 0.0948 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.6035 2.0991 -2.0954 34 1 5.2046 1.3693 -1.5421 35 1 8.1492 4.4652 0.8447 36 1 7.5801 3.3352 2.0985 37 1 8.1162 5.6243 3.0039 38 1 6.4209 5.1494 3.2678 39 1 7.4320 6.8932 0.9752 40 1 7.4930 7.9754 3.2416 41 1 5.7592 7.6159 3.4222 42 1 5.2720 8.9416 1.3840 43 1 7.0060 9.3010 1.2035 44 1 4.2121 11.1843 2.7620 45 1 4.2100 9.6049 3.5828 46 1 4.9123 11.0269 4.3908 47 1 5.3454 12.6219 2.5301 48 1 4.6203 6.0879 1.8500 49 1 5.0048 7.2470 0.5542 50 1 6.1607 5.5026 -0.7206 51 1 4.5263 4.9264 -0.3032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715441030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:25 Heat of formation + Delta-G solvation = -100.378466 kcal Electronic energy + Delta-G solvation = -29457.242984 eV Core-core repulsion = 25357.239467 eV Total energy + Delta-G solvation = -4100.003517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00182 -41.19946 -39.36824 -38.08444 -37.69196 -36.82416 -35.32383 -33.17065 -32.19573 -30.28018 -29.23373 -28.02919 -27.07014 -25.78348 -24.96532 -24.29724 -23.54300 -22.10474 -21.61688 -21.08268 -19.96448 -19.38636 -19.20697 -18.22378 -17.49643 -17.44313 -17.07159 -16.49878 -16.34526 -16.10390 -15.45919 -15.42899 -15.30628 -15.21921 -15.05808 -14.57284 -14.47785 -14.32393 -14.19932 -13.70883 -13.65192 -13.43827 -13.14391 -12.97643 -12.93987 -12.78408 -12.70337 -12.46278 -12.26175 -12.05088 -11.96944 -11.90080 -11.87363 -11.79851 -11.73992 -11.60992 -11.53856 -11.42139 -11.15948 -10.87225 -10.40652 -9.72637 -8.95016 -8.25215 -5.35632 0.85003 1.28366 1.51419 1.57465 1.64844 1.83845 1.98159 2.61546 2.66254 3.18763 3.31065 3.35810 3.54330 3.59163 3.74620 3.80350 3.89577 3.94385 4.02464 4.10262 4.26384 4.29598 4.30665 4.34654 4.46153 4.52369 4.56368 4.60233 4.64140 4.68335 4.73969 4.75121 4.81847 4.82809 4.86702 4.91215 4.98374 5.01909 5.06206 5.10824 5.17710 5.24327 5.26200 5.44159 5.54064 5.55998 5.84132 6.30108 6.39500 6.58218 7.01918 7.07709 7.80890 8.20712 8.99414 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.001970 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.698893 B =14213.018369 C =15140.790576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.496 3.504 4 O -0.532 6.532 5 C -0.148 4.148 6 H 0.145 0.855 7 C -0.085 4.085 8 C -0.166 4.166 9 H 0.145 0.855 10 C 0.544 3.456 11 O -0.579 6.579 12 N -0.601 5.601 13 C 0.115 3.885 14 C -0.122 4.122 15 C -0.075 4.075 16 C -0.114 4.114 17 C 0.151 3.849 18 N -0.627 5.627 19 C 0.147 3.853 20 C -0.359 4.359 21 H 0.051 0.949 22 C -0.077 4.077 23 N -0.940 5.940 24 Si 1.109 2.891 25 H -0.292 1.292 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.130 4.130 29 C 0.107 3.893 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.060 0.940 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.037 0.963 44 H -0.004 1.004 45 H 0.044 0.956 46 H 0.021 0.979 47 H 0.255 0.745 48 H 0.055 0.945 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -27.932 -11.699 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.341 3.659 4 O -0.422 6.422 5 C -0.168 4.168 6 H 0.163 0.837 7 C -0.122 4.122 8 C -0.187 4.187 9 H 0.162 0.838 10 C 0.333 3.667 11 O -0.459 6.459 12 N -0.332 5.332 13 C -0.007 4.007 14 C -0.160 4.160 15 C -0.095 4.095 16 C -0.154 4.154 17 C 0.026 3.974 18 N -0.351 5.351 19 C 0.001 3.999 20 C -0.488 4.488 21 H 0.069 0.931 22 C -0.273 4.273 23 N -0.582 5.582 24 Si 0.933 3.067 25 H -0.219 1.219 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.168 4.168 29 C -0.014 4.014 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.014 0.986 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.386 -26.772 -10.509 29.261 hybrid contribution -0.779 -0.790 -0.367 1.168 sum -6.165 -27.562 -10.876 30.264 Atomic orbital electron populations 1.23613 0.74291 1.05950 1.02719 1.86482 1.25244 1.32253 1.83437 1.22698 0.90609 0.81337 0.71306 1.90680 1.67497 1.37222 1.46769 1.21663 0.87820 0.99461 1.07823 0.83688 1.23281 1.03130 0.96418 0.89343 1.22315 0.96897 0.95895 1.03583 0.83753 1.19757 0.84789 0.82222 0.79965 1.90679 1.66938 1.41110 1.47217 1.48115 1.24818 1.09384 1.50896 1.21632 0.85483 0.98766 0.94825 1.21894 1.02038 0.94307 0.97767 1.21041 0.97694 0.93354 0.97368 1.21959 1.00186 0.94974 0.98272 1.20973 0.98858 0.86596 0.91010 1.44234 1.06225 1.33174 1.51491 1.20767 0.86679 0.96809 0.95638 1.20111 0.87624 0.95436 1.45675 0.93083 1.27075 1.03491 0.93396 1.03387 1.70912 1.18346 1.37301 1.31616 0.82945 0.73663 0.74868 0.75185 1.21858 1.20969 1.19976 1.21997 0.97012 0.98744 0.99025 1.22016 1.00564 0.84398 0.94472 0.91398 0.84859 0.92165 0.84791 0.85089 0.89528 0.90158 0.90246 0.93017 0.90244 0.94089 0.93941 0.93044 0.94406 0.98610 0.93712 0.95962 0.93502 0.92601 0.89746 0.88899 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.81 10.57 -51.43 -0.54 -6.35 16 3 C 0.50 9.24 7.74 71.24 0.55 9.79 16 4 O -0.53 -12.52 16.01 21.96 0.35 -12.16 16 5 C -0.15 -2.35 5.81 -11.54 -0.07 -2.42 16 6 H 0.15 2.46 7.67 -2.39 -0.02 2.44 16 7 C -0.08 -0.86 9.94 30.59 0.30 -0.56 16 8 C -0.17 -2.66 4.64 -11.54 -0.05 -2.71 16 9 H 0.14 2.26 6.09 -2.39 -0.01 2.24 16 10 C 0.54 11.60 7.48 87.65 0.66 12.25 16 11 O -0.58 -16.26 15.67 -3.03 -0.05 -16.31 16 12 N -0.60 -11.45 2.97 -818.98 -2.43 -13.89 16 13 C 0.12 2.26 6.43 86.36 0.56 2.81 16 14 C -0.12 -2.67 5.36 30.67 0.16 -2.50 16 15 C -0.08 -1.77 2.15 -10.77 -0.02 -1.79 16 16 C -0.11 -3.74 5.01 30.60 0.15 -3.59 16 17 C 0.15 5.91 5.44 86.38 0.47 6.38 16 18 N -0.63 -31.61 2.80 -726.94 -2.03 -33.65 16 19 C 0.15 7.15 8.99 127.77 1.15 8.29 16 20 C -0.36 -20.23 9.46 84.03 0.80 -19.43 16 21 H 0.05 2.88 7.98 -2.91 -0.02 2.85 16 22 C -0.08 -4.42 4.61 84.86 0.39 -4.03 16 23 N -0.94 -57.98 12.74 21.65 0.28 -57.71 16 24 Si 1.11 51.54 30.01 68.60 2.06 53.60 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 C -0.13 -2.61 5.14 30.66 0.16 -2.45 16 29 C 0.11 1.62 6.34 86.35 0.55 2.17 16 30 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 33 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.79 7.01 -2.39 -0.02 1.77 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.82 6.47 -2.39 -0.02 1.80 16 43 H 0.04 1.52 8.04 -2.39 -0.02 1.51 16 44 H 0.00 -0.21 6.87 -2.39 -0.02 -0.23 16 45 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 46 H 0.02 1.17 7.27 -2.39 -0.02 1.15 16 47 H 0.25 15.97 6.37 -92.71 -0.59 15.38 16 48 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.08 1.70 6.50 -2.39 -0.02 1.68 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.10 1.24 5.51 -2.39 -0.01 1.23 16 Total: -1.00 -75.73 406.88 5.66 -70.07 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.09 Total: 12.70 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.95 Total: 3.69 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -4.19 Total: -105.24 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.24 Total: -34.82 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.06 Total: 53.60 kcal Total: -75.73 5.66 -70.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715441030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.313 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds