Wall clock time and date at job start Tue Mar 31 2020 21:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99812 * 2 1 4 4 O 1.20820 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99687 * 180.27495 * 3 2 1 6 6 H 1.09006 * 115.55140 * 38.37964 * 5 3 2 7 7 C 1.53003 * 117.49684 * 184.04587 * 5 3 2 8 8 C 1.52997 * 117.49657 * 252.70505 * 5 3 2 9 9 H 1.09004 * 117.49558 * 145.02754 * 8 5 3 10 10 C 1.50700 * 117.50077 * 0.02562 * 8 5 3 11 11 O 1.21280 * 119.99978 * 10.62626 * 10 8 5 12 12 N 1.34777 * 120.00048 * 190.62619 * 10 8 5 13 13 C 1.46926 * 120.62907 * 359.72095 * 12 10 8 14 14 C 1.52766 * 109.00885 * 233.58411 * 13 12 10 15 15 C 1.53048 * 109.38075 * 305.58941 * 14 13 12 16 16 C 1.53001 * 109.44687 * 181.25295 * 15 14 13 17 17 C 1.53000 * 109.47199 * 64.93565 * 16 15 14 18 18 N 1.46500 * 109.46949 * 179.97438 * 17 16 15 19 19 C 1.46498 * 119.99754 * 90.00595 * 18 17 16 20 20 C 1.36935 * 120.00107 * 270.00420 * 18 17 16 21 21 H 1.08004 * 120.00205 * 22.43634 * 20 18 17 22 22 C 1.38814 * 119.99709 * 202.44059 * 20 18 17 23 23 N 1.31615 * 120.00356 * 10.53695 * 22 20 18 24 24 Si 1.86801 * 119.99594 * 190.53584 * 22 20 18 25 25 H 1.48507 * 109.47116 * 90.00151 * 24 22 20 26 26 H 1.48504 * 109.47189 * 209.99874 * 24 22 20 27 27 H 1.48494 * 109.47375 * 330.00109 * 24 22 20 28 28 C 1.53045 * 109.53773 * 61.23968 * 15 14 13 29 29 C 1.46919 * 120.63079 * 179.97438 * 12 10 8 30 30 H 1.08998 * 109.47248 * 300.00285 * 1 2 3 31 31 H 1.08990 * 109.46977 * 60.00428 * 1 2 3 32 32 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 33 33 H 1.08999 * 117.50096 * 214.97804 * 7 5 3 34 34 H 1.08998 * 117.49594 * 359.97438 * 7 5 3 35 35 H 1.09000 * 109.59008 * 353.41964 * 13 12 10 36 36 H 1.08996 * 109.58740 * 113.84689 * 13 12 10 37 37 H 1.08995 * 109.56719 * 185.55554 * 14 13 12 38 38 H 1.08997 * 109.38585 * 65.51098 * 14 13 12 39 39 H 1.08994 * 109.45670 * 301.21930 * 15 14 13 40 40 H 1.09002 * 109.46581 * 184.94129 * 16 15 14 41 41 H 1.09007 * 109.46839 * 304.93582 * 16 15 14 42 42 H 1.08989 * 109.47467 * 300.00363 * 17 16 15 43 43 H 1.09005 * 109.46731 * 60.00047 * 17 16 15 44 44 H 1.08999 * 109.47266 * 94.15312 * 19 18 17 45 45 H 1.09004 * 109.46941 * 214.15588 * 19 18 17 46 46 H 1.09000 * 109.47031 * 334.15544 * 19 18 17 47 47 H 0.96993 * 120.00133 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.49478 * 178.68392 * 28 15 14 49 49 H 1.08999 * 109.52537 * 58.59940 * 28 15 14 50 50 H 1.08999 * 109.58956 * 246.15568 * 29 12 10 51 51 H 1.08999 * 109.58689 * 6.44050 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0063 6 1 4.0735 0.5310 -0.6207 7 6 4.2013 2.6636 0.0898 8 6 4.2561 1.7120 1.2875 9 1 5.2175 1.2558 1.5241 10 6 3.3788 2.0301 2.4708 11 8 2.1981 1.7543 2.4418 12 7 3.9062 2.6211 3.5612 13 6 5.3358 2.9557 3.6136 14 6 5.9437 2.3458 4.8754 15 6 5.1450 2.8055 6.0973 16 6 5.7713 2.2206 7.3649 17 6 7.1743 2.8005 7.5548 18 7 7.7738 2.2410 8.7688 19 6 8.5601 1.0071 8.6956 20 6 7.5992 2.8713 9.9718 21 1 6.7626 3.5393 10.1151 22 6 8.4974 2.6519 11.0071 23 7 9.6230 2.0097 10.7769 24 14 8.1087 3.2681 12.7272 25 1 7.3726 2.2172 13.4749 26 1 9.3738 3.5863 13.4367 27 1 7.2706 4.4907 12.6374 28 6 3.6979 2.3226 5.9741 29 6 3.0635 2.9379 4.7223 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 5.1265 2.8332 -0.4610 34 1 3.5306 3.5201 0.1571 35 1 5.8384 2.5509 2.7352 36 1 5.4569 4.0386 3.6398 37 1 6.9796 2.6699 4.9750 38 1 5.9077 1.2586 4.8053 39 1 5.1611 3.8939 6.1532 40 1 5.1533 2.4748 8.2260 41 1 5.8358 1.1365 7.2713 42 1 7.7922 2.5464 6.6936 43 1 7.1097 3.8847 7.6483 44 1 9.6158 1.2549 8.5856 45 1 8.4156 0.4296 9.6088 46 1 8.2337 0.4186 7.8381 47 1 10.2507 1.8567 11.5002 48 1 3.1355 2.6303 6.8556 49 1 3.6821 1.2357 5.8935 50 1 2.9958 4.0194 4.8405 51 1 2.0663 2.5235 4.5740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715441046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:30 Heat of formation + Delta-G solvation = -75.532726 kcal Electronic energy + Delta-G solvation = -29904.039789 eV Core-core repulsion = 25805.113664 eV Total energy + Delta-G solvation = -4098.926125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.17908 -40.04670 -38.28224 -36.97114 -35.95826 -35.78026 -33.87834 -31.53135 -31.08086 -28.86274 -28.34500 -26.14676 -25.76766 -24.73749 -24.10123 -23.34531 -22.21295 -20.92014 -20.38361 -19.90467 -19.22042 -18.27632 -17.18676 -16.70765 -16.62903 -16.41005 -15.77343 -15.59106 -14.95451 -14.84861 -14.46791 -14.25825 -14.02603 -13.81722 -13.63953 -13.35339 -13.24645 -13.12319 -12.90309 -12.57155 -12.51082 -12.24197 -12.20737 -11.90526 -11.38405 -11.25503 -11.17782 -11.10558 -11.05886 -10.88850 -10.86411 -10.64488 -10.59388 -10.58514 -10.34566 -10.27647 -10.02319 -9.95078 -9.80847 -9.67527 -8.81131 -8.50539 -6.69629 -5.69117 -3.15223 1.91359 2.29671 2.41287 2.77648 3.36344 3.38986 3.45129 3.46370 4.02987 4.15188 4.19646 4.51191 4.52907 4.66837 4.73926 4.85897 4.87341 4.94289 4.99301 5.05929 5.15894 5.17660 5.20357 5.29759 5.38435 5.43575 5.47827 5.50577 5.62616 5.67169 5.74295 5.80529 5.89666 6.07463 6.09072 6.24628 6.28839 6.30719 6.37144 6.52400 6.54493 6.78939 6.88055 7.04096 7.17015 7.44117 7.69241 7.75348 7.83569 7.92109 8.43891 9.28126 9.92087 10.40727 11.35931 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.001945 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.663643 B =14389.851212 C =14693.597956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.356 6.356 3 C 0.506 3.494 4 O -0.500 6.500 5 C -0.139 4.139 6 H 0.144 0.856 7 C -0.118 4.118 8 C -0.162 4.162 9 H 0.143 0.857 10 C 0.539 3.461 11 O -0.533 6.533 12 N -0.600 5.600 13 C 0.106 3.894 14 C -0.132 4.132 15 C -0.085 4.085 16 C -0.132 4.132 17 C 0.153 3.847 18 N -0.607 5.607 19 C 0.166 3.834 20 C -0.250 4.250 21 H 0.067 0.933 22 C -0.002 4.002 23 N -0.911 5.911 24 Si 0.904 3.096 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C -0.128 4.128 29 C 0.112 3.888 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.043 0.957 44 H 0.027 0.973 45 H 0.043 0.957 46 H -0.006 1.006 47 H 0.251 0.749 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.460 -1.535 -24.070 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.273 6.273 3 C 0.349 3.651 4 O -0.387 6.387 5 C -0.159 4.159 6 H 0.162 0.838 7 C -0.155 4.155 8 C -0.183 4.183 9 H 0.161 0.839 10 C 0.326 3.674 11 O -0.410 6.410 12 N -0.333 5.333 13 C -0.016 4.016 14 C -0.170 4.170 15 C -0.104 4.104 16 C -0.173 4.173 17 C 0.026 3.974 18 N -0.329 5.329 19 C 0.021 3.979 20 C -0.380 4.380 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.557 5.557 24 Si 0.735 3.265 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.166 4.166 29 C -0.010 4.010 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.170 -1.420 -23.938 26.891 hybrid contribution -0.178 0.183 1.176 1.203 sum -12.347 -1.237 -22.762 25.924 Atomic orbital electron populations 1.23196 0.76236 1.03304 1.02499 1.86403 1.23404 1.33166 1.84309 1.21957 0.89785 0.81533 0.71824 1.90628 1.66501 1.36413 1.45146 1.21742 0.89762 1.02286 1.02087 0.83784 1.23189 1.02844 0.92568 0.96900 1.22443 1.01490 1.05983 0.88351 0.83909 1.19497 0.87500 0.77260 0.83096 1.90709 1.16260 1.53180 1.80855 1.47971 1.10131 1.59644 1.15558 1.21796 0.79658 1.00655 0.99526 1.21978 1.00291 1.01131 0.93616 1.21141 0.93552 1.00380 0.95315 1.22275 0.99660 1.00159 0.95159 1.20773 0.91236 0.96306 0.89128 1.43916 1.60357 1.25377 1.03298 1.20761 0.94483 0.86364 0.96306 1.19197 1.06171 1.23494 0.89102 0.91520 1.25034 0.95358 1.00593 0.98977 1.70063 1.08929 1.45823 1.30891 0.86251 0.77063 0.78490 0.84719 1.21581 1.21765 1.20541 1.21993 0.96715 1.01044 0.96853 1.21676 0.94966 1.00025 0.84283 0.91645 0.92283 0.88386 0.85951 0.86736 0.89806 0.90969 0.89744 0.91584 0.91197 0.92166 0.92943 0.94717 0.93885 0.95516 0.93831 0.98778 0.93836 0.90603 0.91686 0.91417 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.18 10.57 -39.27 -0.41 -4.59 16 3 C 0.51 6.23 5.40 36.00 0.19 6.42 16 4 O -0.50 -7.54 15.14 -25.45 -0.39 -7.92 16 5 C -0.14 -1.16 6.30 -91.77 -0.58 -1.74 16 6 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.12 -0.78 9.75 -26.69 -0.26 -1.04 16 8 C -0.16 -1.31 4.79 -91.73 -0.44 -1.75 16 9 H 0.14 0.77 7.10 -51.93 -0.37 0.40 16 10 C 0.54 6.47 7.42 -10.98 -0.08 6.39 16 11 O -0.53 -8.39 13.03 -14.31 -0.19 -8.57 16 12 N -0.60 -6.46 2.98 -173.01 -0.52 -6.97 16 13 C 0.11 0.90 6.32 -3.93 -0.02 0.88 16 14 C -0.13 -1.38 5.13 -26.83 -0.14 -1.51 16 15 C -0.08 -1.04 2.15 -90.57 -0.19 -1.23 16 16 C -0.13 -2.16 5.01 -26.73 -0.13 -2.30 16 17 C 0.15 2.98 5.40 -4.04 -0.02 2.96 16 18 N -0.61 -15.18 2.93 -181.12 -0.53 -15.71 16 19 C 0.17 4.10 8.96 59.85 0.54 4.63 16 20 C -0.25 -6.87 9.67 -15.06 -0.15 -7.02 16 21 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 22 C 0.00 -0.06 5.15 -17.43 -0.09 -0.14 16 23 N -0.91 -26.75 10.55 55.49 0.59 -26.16 16 24 Si 0.90 21.96 29.57 -169.99 -5.03 16.94 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.13 -1.48 5.36 -26.58 -0.14 -1.63 16 29 C 0.11 1.26 6.44 -3.69 -0.02 1.24 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 0.99 7.68 -51.93 -0.40 0.59 16 35 H 0.08 0.52 5.75 -51.93 -0.30 0.22 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.88 6.50 -51.93 -0.34 0.55 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.03 0.62 6.46 -51.93 -0.34 0.29 16 43 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 44 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 45 H 0.04 1.17 7.17 -51.93 -0.37 0.79 16 46 H -0.01 -0.14 8.04 -51.93 -0.42 -0.55 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.09 1.12 7.00 -51.93 -0.36 0.75 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -35.32 403.03 -9.61 -44.93 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -8.74 Total: -3.61 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.48 Total: 5.60 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.46 Total: -48.85 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.99 Total: -21.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.32 -9.61 -44.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715441046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.603 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds