Wall clock time and date at job start Tue Mar 31 2020 21:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99812 * 2 1 4 4 O 1.20820 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99687 * 180.27495 * 3 2 1 6 6 H 1.09006 * 115.55140 * 38.37964 * 5 3 2 7 7 C 1.53003 * 117.49684 * 184.04587 * 5 3 2 8 8 C 1.52997 * 117.49657 * 252.70505 * 5 3 2 9 9 H 1.09004 * 117.49558 * 145.02754 * 8 5 3 10 10 C 1.50700 * 117.50077 * 0.02562 * 8 5 3 11 11 O 1.21280 * 119.99978 * 10.62626 * 10 8 5 12 12 N 1.34777 * 120.00048 * 190.62619 * 10 8 5 13 13 C 1.46926 * 120.62907 * 359.72095 * 12 10 8 14 14 C 1.52766 * 109.00885 * 233.58411 * 13 12 10 15 15 C 1.53048 * 109.38075 * 305.58941 * 14 13 12 16 16 C 1.53001 * 109.44687 * 181.25295 * 15 14 13 17 17 C 1.53000 * 109.47199 * 64.93565 * 16 15 14 18 18 N 1.46500 * 109.46949 * 179.97438 * 17 16 15 19 19 C 1.46498 * 119.99754 * 90.00595 * 18 17 16 20 20 C 1.36935 * 120.00107 * 270.00420 * 18 17 16 21 21 H 1.08004 * 120.00205 * 22.43634 * 20 18 17 22 22 C 1.38814 * 119.99709 * 202.44059 * 20 18 17 23 23 N 1.31615 * 120.00356 * 10.53695 * 22 20 18 24 24 Si 1.86801 * 119.99594 * 190.53584 * 22 20 18 25 25 H 1.48507 * 109.47116 * 90.00151 * 24 22 20 26 26 H 1.48504 * 109.47189 * 209.99874 * 24 22 20 27 27 H 1.48494 * 109.47375 * 330.00109 * 24 22 20 28 28 C 1.53045 * 109.53773 * 61.23968 * 15 14 13 29 29 C 1.46919 * 120.63079 * 179.97438 * 12 10 8 30 30 H 1.08998 * 109.47248 * 300.00285 * 1 2 3 31 31 H 1.08990 * 109.46977 * 60.00428 * 1 2 3 32 32 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 33 33 H 1.08999 * 117.50096 * 214.97804 * 7 5 3 34 34 H 1.08998 * 117.49594 * 359.97438 * 7 5 3 35 35 H 1.09000 * 109.59008 * 353.41964 * 13 12 10 36 36 H 1.08996 * 109.58740 * 113.84689 * 13 12 10 37 37 H 1.08995 * 109.56719 * 185.55554 * 14 13 12 38 38 H 1.08997 * 109.38585 * 65.51098 * 14 13 12 39 39 H 1.08994 * 109.45670 * 301.21930 * 15 14 13 40 40 H 1.09002 * 109.46581 * 184.94129 * 16 15 14 41 41 H 1.09007 * 109.46839 * 304.93582 * 16 15 14 42 42 H 1.08989 * 109.47467 * 300.00363 * 17 16 15 43 43 H 1.09005 * 109.46731 * 60.00047 * 17 16 15 44 44 H 1.08999 * 109.47266 * 94.15312 * 19 18 17 45 45 H 1.09004 * 109.46941 * 214.15588 * 19 18 17 46 46 H 1.09000 * 109.47031 * 334.15544 * 19 18 17 47 47 H 0.96993 * 120.00133 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.49478 * 178.68392 * 28 15 14 49 49 H 1.08999 * 109.52537 * 58.59940 * 28 15 14 50 50 H 1.08999 * 109.58956 * 246.15568 * 29 12 10 51 51 H 1.08999 * 109.58689 * 6.44050 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0063 6 1 4.0735 0.5310 -0.6207 7 6 4.2013 2.6636 0.0898 8 6 4.2561 1.7120 1.2875 9 1 5.2175 1.2558 1.5241 10 6 3.3788 2.0301 2.4708 11 8 2.1981 1.7543 2.4418 12 7 3.9062 2.6211 3.5612 13 6 5.3358 2.9557 3.6136 14 6 5.9437 2.3458 4.8754 15 6 5.1450 2.8055 6.0973 16 6 5.7713 2.2206 7.3649 17 6 7.1743 2.8005 7.5548 18 7 7.7738 2.2410 8.7688 19 6 8.5601 1.0071 8.6956 20 6 7.5992 2.8713 9.9718 21 1 6.7626 3.5393 10.1151 22 6 8.4974 2.6519 11.0071 23 7 9.6230 2.0097 10.7769 24 14 8.1087 3.2681 12.7272 25 1 7.3726 2.2172 13.4749 26 1 9.3738 3.5863 13.4367 27 1 7.2706 4.4907 12.6374 28 6 3.6979 2.3226 5.9741 29 6 3.0635 2.9379 4.7223 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 5.1265 2.8332 -0.4610 34 1 3.5306 3.5201 0.1571 35 1 5.8384 2.5509 2.7352 36 1 5.4569 4.0386 3.6398 37 1 6.9796 2.6699 4.9750 38 1 5.9077 1.2586 4.8053 39 1 5.1611 3.8939 6.1532 40 1 5.1533 2.4748 8.2260 41 1 5.8358 1.1365 7.2713 42 1 7.7922 2.5464 6.6936 43 1 7.1097 3.8847 7.6483 44 1 9.6158 1.2549 8.5856 45 1 8.4156 0.4296 9.6088 46 1 8.2337 0.4186 7.8381 47 1 10.2507 1.8567 11.5002 48 1 3.1355 2.6303 6.8556 49 1 3.6821 1.2357 5.8935 50 1 2.9958 4.0194 4.8405 51 1 2.0663 2.5235 4.5740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715441046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:29 Heat of formation + Delta-G solvation = -95.570411 kcal Electronic energy + Delta-G solvation = -29904.908688 eV Core-core repulsion = 25805.113664 eV Total energy + Delta-G solvation = -4099.795024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.99366 -40.93854 -39.24206 -37.88210 -37.41463 -36.77810 -35.17389 -33.15577 -32.17132 -30.23157 -29.13251 -27.91418 -27.12214 -25.70938 -24.98357 -24.21404 -23.52941 -21.99372 -21.49160 -21.07045 -20.04012 -19.08629 -18.65927 -18.06510 -17.54532 -17.27926 -16.88738 -16.55019 -16.36301 -15.84213 -15.54221 -15.43705 -15.17741 -15.00542 -14.92286 -14.41974 -14.28134 -14.19228 -14.09423 -13.90376 -13.56577 -13.21267 -13.10948 -12.90946 -12.89475 -12.79069 -12.58476 -12.40779 -12.19181 -12.14139 -11.99812 -11.79168 -11.76211 -11.73260 -11.67427 -11.55993 -11.46078 -11.34806 -11.09714 -10.81342 -10.60397 -9.68593 -8.71826 -7.80262 -5.28234 1.11304 1.45949 1.46147 1.47254 1.55793 1.69924 2.00659 2.51926 2.73511 3.32530 3.36549 3.53043 3.62085 3.67310 3.81632 3.89832 3.95392 4.04155 4.15453 4.19827 4.27337 4.30648 4.35509 4.42526 4.51965 4.61382 4.63149 4.68474 4.74810 4.80125 4.83385 4.85365 4.85984 4.95347 4.99906 5.02858 5.09649 5.11251 5.26296 5.28080 5.36467 5.48229 5.52426 5.60013 5.63861 5.67037 5.74783 6.35633 6.36448 6.82543 7.07403 7.18884 7.93122 8.35341 9.22887 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.001945 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.663643 B =14389.851212 C =14693.597956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.495 3.505 4 O -0.540 6.540 5 C -0.151 4.151 6 H 0.181 0.819 7 C -0.098 4.098 8 C -0.161 4.161 9 H 0.181 0.819 10 C 0.526 3.474 11 O -0.581 6.581 12 N -0.600 5.600 13 C 0.107 3.893 14 C -0.128 4.128 15 C -0.077 4.077 16 C -0.116 4.116 17 C 0.151 3.849 18 N -0.626 5.626 19 C 0.180 3.820 20 C -0.256 4.256 21 H 0.069 0.931 22 C -0.059 4.059 23 N -0.942 5.942 24 Si 0.967 3.033 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.268 1.268 28 C -0.119 4.119 29 C 0.115 3.885 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.003 0.997 45 H 0.013 0.987 46 H 0.028 0.972 47 H 0.247 0.753 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.078 0.922 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -1.207 -25.961 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.340 3.660 4 O -0.430 6.430 5 C -0.170 4.170 6 H 0.198 0.802 7 C -0.135 4.135 8 C -0.182 4.182 9 H 0.198 0.802 10 C 0.315 3.685 11 O -0.462 6.462 12 N -0.332 5.332 13 C -0.014 4.014 14 C -0.166 4.166 15 C -0.096 4.096 16 C -0.156 4.156 17 C 0.025 3.975 18 N -0.349 5.349 19 C 0.035 3.965 20 C -0.386 4.386 21 H 0.086 0.914 22 C -0.254 4.254 23 N -0.589 5.589 24 Si 0.796 3.204 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.193 1.193 28 C -0.157 4.157 29 C -0.007 4.007 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.186 0.814 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.031 0.969 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.266 -1.081 -25.853 28.221 hybrid contribution -0.551 0.078 1.741 1.828 sum -11.817 -1.003 -24.111 26.870 Atomic orbital electron populations 1.23371 0.75443 1.05146 1.01705 1.86403 1.24457 1.33308 1.84048 1.22892 0.91625 0.80986 0.70480 1.90597 1.67805 1.37526 1.47072 1.22051 0.87163 1.04695 1.03091 0.80211 1.23345 1.03669 0.90738 0.95727 1.22566 1.01818 1.07082 0.86725 0.80212 1.20288 0.87482 0.76495 0.84233 1.90696 1.18580 1.55084 1.81840 1.48098 1.11043 1.59029 1.14997 1.21975 0.78093 1.01545 0.99767 1.21937 1.00253 1.01012 0.93433 1.21048 0.93740 1.00495 0.94293 1.22016 0.97556 0.99526 0.96527 1.20980 0.92669 0.96073 0.87738 1.44220 1.60667 1.25639 1.04421 1.20495 0.93348 0.86530 0.96171 1.19513 1.05811 1.22909 0.90370 0.91359 1.25796 0.95489 1.01532 1.02549 1.70225 1.09807 1.47393 1.31521 0.85262 0.76638 0.78229 0.80315 1.21583 1.22118 1.19281 1.21877 0.96450 1.00273 0.97144 1.21553 0.94300 1.00404 0.84470 0.93836 0.91691 0.85255 0.81449 0.89275 0.86492 0.89662 0.89160 0.91997 0.90516 0.94334 0.93792 0.92547 0.94183 0.97908 0.96860 0.95308 0.94398 0.90738 0.92814 0.90357 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.56 113.37 1.20 1.88 16 2 O -0.37 -8.54 10.57 -51.47 -0.54 -9.08 16 3 C 0.50 12.06 5.40 71.24 0.38 12.44 16 4 O -0.54 -16.81 15.14 28.39 0.43 -16.38 16 5 C -0.15 -2.11 6.30 -11.54 -0.07 -2.18 16 6 H 0.18 1.12 8.14 -2.38 -0.02 1.10 16 7 C -0.10 -0.96 9.75 30.62 0.30 -0.66 16 8 C -0.16 -2.07 4.79 -11.52 -0.06 -2.12 16 9 H 0.18 0.93 7.10 -2.38 -0.02 0.92 16 10 C 0.53 11.91 7.42 87.66 0.65 12.56 16 11 O -0.58 -18.67 13.03 15.97 0.21 -18.46 16 12 N -0.60 -11.74 2.98 -819.66 -2.44 -14.18 16 13 C 0.11 1.41 6.32 86.22 0.54 1.96 16 14 C -0.13 -2.26 5.13 30.53 0.16 -2.10 16 15 C -0.08 -1.73 2.15 -10.76 -0.02 -1.75 16 16 C -0.12 -3.67 5.01 30.59 0.15 -3.51 16 17 C 0.15 5.65 5.40 86.38 0.47 6.12 16 18 N -0.63 -31.07 2.93 -726.94 -2.13 -33.20 16 19 C 0.18 8.88 8.96 127.77 1.14 10.03 16 20 C -0.26 -14.03 9.67 84.03 0.81 -13.22 16 21 H 0.07 3.65 7.85 -2.91 -0.02 3.62 16 22 C -0.06 -3.35 5.15 84.86 0.44 -2.91 16 23 N -0.94 -56.14 10.55 21.65 0.23 -55.91 16 24 Si 0.97 45.40 29.57 68.60 2.03 47.43 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C -0.12 -2.67 5.36 30.69 0.16 -2.50 16 29 C 0.12 2.51 6.44 86.38 0.56 3.07 16 30 H 0.04 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.17 0.13 8.14 -2.39 -0.02 0.12 16 34 H 0.09 1.40 7.68 -2.39 -0.02 1.38 16 35 H 0.12 0.81 5.75 -2.39 -0.01 0.79 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.53 6.50 -2.39 -0.02 1.52 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.06 1.88 6.46 -2.39 -0.02 1.86 16 43 H 0.04 1.52 8.04 -2.38 -0.02 1.50 16 44 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 45 H 0.01 0.70 7.17 -2.38 -0.02 0.68 16 46 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 50 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.07 1.80 7.00 -2.39 -0.02 1.78 16 Total: -1.00 -80.69 403.03 5.50 -75.19 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.90 Total: 7.49 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.82 Total: 17.09 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.34 Total: -103.29 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: 0.09 Total: -43.92 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -80.69 5.50 -75.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715441046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.382 kcal (2) G-P(sol) polarization free energy of solvation -80.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds