Wall clock time and date at job start Tue Mar 31 2020 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99606 * 2 1 4 4 O 1.20820 * 120.00093 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99512 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.56008 * 39.62081 * 5 3 2 7 7 C 1.52994 * 117.49552 * 253.93206 * 5 3 2 8 8 C 1.52995 * 117.49559 * 185.31025 * 5 3 2 9 9 H 1.09000 * 117.51812 * 214.96480 * 8 5 3 10 10 C 1.50703 * 117.50251 * 0.02562 * 8 5 3 11 11 O 1.21284 * 119.99810 * 75.34004 * 10 8 5 12 12 N 1.34777 * 119.99738 * 255.34698 * 10 8 5 13 13 C 1.46927 * 120.62643 * 179.97438 * 12 10 8 14 14 C 1.53193 * 108.77564 * 233.63098 * 13 12 10 15 15 C 1.53050 * 109.31014 * 305.36813 * 14 13 12 16 16 C 1.52996 * 109.45778 * 181.38710 * 15 14 13 17 17 C 1.53001 * 109.46819 * 174.99890 * 16 15 14 18 18 N 1.46501 * 109.46919 * 179.97438 * 17 16 15 19 19 C 1.46504 * 120.00167 * 90.00195 * 18 17 16 20 20 C 1.36930 * 120.00225 * 269.99961 * 18 17 16 21 21 H 1.07999 * 120.00270 * 21.43692 * 20 18 17 22 22 C 1.38818 * 120.00307 * 201.43533 * 20 18 17 23 23 N 1.31621 * 119.99741 * 11.08715 * 22 20 18 24 24 Si 1.86798 * 120.00175 * 191.08398 * 22 20 18 25 25 H 1.48501 * 109.46994 * 60.00013 * 24 22 20 26 26 H 1.48498 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47005 * 300.00050 * 24 22 20 28 28 C 1.53035 * 109.53891 * 61.36518 * 15 14 13 29 29 C 1.46926 * 120.63178 * 0.02562 * 12 10 8 30 30 H 1.09006 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47101 * 300.00062 * 1 2 3 32 32 H 1.08994 * 109.47141 * 60.00033 * 1 2 3 33 33 H 1.09001 * 117.49967 * 145.02010 * 7 5 3 34 34 H 1.09001 * 117.52550 * 359.97438 * 7 5 3 35 35 H 1.09005 * 109.58669 * 113.84324 * 13 12 10 36 36 H 1.09004 * 109.70728 * 353.48747 * 13 12 10 37 37 H 1.08994 * 109.50029 * 185.42024 * 14 13 12 38 38 H 1.08994 * 109.52644 * 65.33091 * 14 13 12 39 39 H 1.09003 * 109.45974 * 301.35744 * 15 14 13 40 40 H 1.09002 * 109.47393 * 55.00035 * 16 15 14 41 41 H 1.09002 * 109.47131 * 294.99593 * 16 15 14 42 42 H 1.09003 * 109.47490 * 299.99518 * 17 16 15 43 43 H 1.08993 * 109.47473 * 60.00222 * 17 16 15 44 44 H 1.09000 * 109.47274 * 93.70389 * 19 18 17 45 45 H 1.09001 * 109.47458 * 213.71425 * 19 18 17 46 46 H 1.09007 * 109.46785 * 333.70778 * 19 18 17 47 47 H 0.96996 * 119.99737 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.49672 * 58.58388 * 28 15 14 49 49 H 1.09005 * 109.49815 * 178.68822 * 28 15 14 50 50 H 1.09003 * 109.58805 * 246.15774 * 29 12 10 51 51 H 1.09001 * 109.58455 * 6.58267 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0753 0.5432 -0.6280 7 6 4.2526 1.6867 1.3033 8 6 4.2011 2.6613 0.1250 9 1 5.1279 2.8420 -0.4194 10 6 3.2735 3.8435 0.2405 11 8 2.6966 4.0618 1.2847 12 7 3.0852 4.6579 -0.8167 13 6 2.1836 5.8140 -0.7196 14 6 1.1620 5.7396 -1.8587 15 6 1.9005 5.6287 -3.1946 16 6 0.8839 5.5889 -4.3372 17 6 1.6221 5.6039 -5.6773 18 7 0.6486 5.5652 -6.7715 19 6 0.1210 6.8139 -7.3270 20 6 0.2319 4.3619 -7.2750 21 1 0.3274 3.4655 -6.6803 22 6 -0.3132 4.2943 -8.5498 23 7 -0.2325 5.3316 -9.3560 24 14 -1.1613 2.7311 -9.1213 25 1 -2.3072 2.4335 -8.2248 26 1 -1.6534 2.9143 -10.5103 27 1 -0.1968 1.6024 -9.0831 28 6 2.7374 4.3476 -3.2119 29 6 3.7765 4.4059 -2.0884 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 5.2132 1.2260 1.5338 34 1 3.6159 1.9011 2.1617 35 1 2.7601 6.7352 -0.8055 36 1 1.6645 5.7959 0.2386 37 1 0.5480 6.6401 -1.8562 38 1 0.5260 4.8652 -1.7210 39 1 2.5548 6.4914 -3.3205 40 1 0.2304 6.4590 -4.2727 41 1 0.2872 4.6799 -4.2612 42 1 2.2187 6.5129 -5.7534 43 1 2.2755 4.7339 -5.7420 44 1 0.7186 7.1091 -8.1894 45 1 -0.9139 6.6657 -7.6356 46 1 0.1656 7.5962 -6.5692 47 1 -0.6138 5.2844 -10.2466 48 1 2.0870 3.4860 -3.0612 49 1 3.2449 4.2575 -4.1725 50 1 4.4832 5.2119 -2.2861 51 1 4.3085 3.4561 -2.0331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715441047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:33 Heat of formation + Delta-G solvation = -72.829968 kcal Electronic energy + Delta-G solvation = -30772.003522 eV Core-core repulsion = 26673.194597 eV Total energy + Delta-G solvation = -4098.808925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.17839 -39.95022 -38.19699 -36.85343 -36.04775 -35.67478 -33.74505 -31.41363 -30.97085 -28.74045 -28.41276 -26.03646 -25.69298 -24.82092 -23.97918 -23.18059 -22.08597 -20.98126 -20.33312 -19.86074 -18.98633 -18.25408 -17.24366 -16.63889 -16.57587 -16.38013 -15.54151 -15.47987 -14.97603 -14.84183 -14.41205 -14.15547 -13.90764 -13.71147 -13.48594 -13.41751 -13.20355 -13.13418 -12.64575 -12.58457 -12.39738 -12.21437 -12.18417 -11.80146 -11.26397 -11.20056 -11.10775 -11.04524 -10.97265 -10.91028 -10.80748 -10.66409 -10.61301 -10.45421 -10.30050 -10.13396 -10.03904 -9.78262 -9.74835 -9.61718 -8.58727 -8.45971 -6.67410 -5.66666 -3.11372 1.83007 2.23855 2.59250 2.91475 3.40309 3.45632 3.46560 3.46768 4.14415 4.23936 4.27292 4.52440 4.53626 4.73825 4.82031 4.91666 4.97538 5.00836 5.01556 5.14536 5.19065 5.25511 5.32096 5.35694 5.41814 5.48844 5.56042 5.57840 5.69530 5.80667 5.85684 5.93840 6.04919 6.15560 6.16946 6.26402 6.33458 6.40400 6.55740 6.58244 6.63652 6.83460 6.95260 7.09753 7.42778 7.48312 7.54297 7.77358 7.85928 8.22517 8.46124 9.30677 9.95125 10.43798 11.38604 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.002959 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.867493 B = 9460.636291 C =10884.053887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.479 3.521 4 O -0.475 6.475 5 C -0.143 4.143 6 H 0.147 0.853 7 C -0.116 4.116 8 C -0.160 4.160 9 H 0.140 0.860 10 C 0.558 3.442 11 O -0.537 6.537 12 N -0.601 5.601 13 C 0.119 3.881 14 C -0.127 4.127 15 C -0.082 4.082 16 C -0.132 4.132 17 C 0.153 3.847 18 N -0.607 5.607 19 C 0.165 3.835 20 C -0.249 4.249 21 H 0.066 0.934 22 C -0.002 4.002 23 N -0.912 5.912 24 Si 0.904 3.096 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 C -0.129 4.129 29 C 0.108 3.892 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.045 0.955 46 H -0.006 1.006 47 H 0.252 0.748 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.546 -6.735 20.843 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.360 6.360 5 C -0.162 4.162 6 H 0.164 0.836 7 C -0.153 4.153 8 C -0.181 4.181 9 H 0.157 0.843 10 C 0.346 3.654 11 O -0.414 6.414 12 N -0.334 5.334 13 C -0.004 4.004 14 C -0.165 4.165 15 C -0.102 4.102 16 C -0.172 4.172 17 C 0.026 3.974 18 N -0.330 5.330 19 C 0.021 3.979 20 C -0.379 4.379 21 H 0.084 0.916 22 C -0.199 4.199 23 N -0.558 5.558 24 Si 0.734 3.266 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.210 1.210 28 C -0.167 4.167 29 C -0.015 4.015 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.087 0.913 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.915 -6.270 21.191 24.221 hybrid contribution -0.761 -0.877 -0.713 1.362 sum 9.153 -7.146 20.478 23.541 Atomic orbital electron populations 1.23300 0.75754 1.03742 1.02887 1.86441 1.23722 1.32871 1.84281 1.22479 0.90332 0.81774 0.73390 1.90785 1.66223 1.35734 1.43300 1.21753 0.89302 0.99328 1.05817 0.83567 1.23117 1.02485 0.98397 0.91343 1.22449 1.01229 0.89231 1.05148 0.84275 1.19086 0.80889 0.82051 0.83409 1.90647 1.48916 1.72799 1.29053 1.47847 1.45643 1.28229 1.11687 1.21547 0.91546 0.86923 1.00347 1.21957 0.97742 1.02627 0.94177 1.21112 0.97255 0.97168 0.94627 1.22261 0.97913 1.01642 0.95373 1.20774 0.91041 0.98569 0.87024 1.43915 1.47485 1.03295 1.38262 1.20767 0.98897 0.84701 0.93561 1.19150 1.35614 0.86762 0.96385 0.91621 1.24994 1.01866 0.97366 0.95708 1.70067 1.48733 1.29615 1.07360 0.86349 0.79682 0.83017 0.77577 1.21194 1.21640 1.21018 1.21990 0.97791 0.98952 0.97962 1.21803 0.94923 1.01444 0.83338 0.87983 0.91858 0.91545 0.86147 0.86767 0.91942 0.89442 0.91079 0.91470 0.91530 0.92886 0.92400 0.95008 0.93653 0.95662 0.93634 0.98780 0.93812 0.91672 0.90017 0.91329 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -3.93 10.57 -39.26 -0.41 -4.35 16 3 C 0.48 5.82 7.71 36.01 0.28 6.09 16 4 O -0.48 -7.41 13.28 -25.51 -0.34 -7.75 16 5 C -0.14 -1.21 6.30 -91.77 -0.58 -1.78 16 6 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.12 -0.86 9.75 -26.74 -0.26 -1.12 16 8 C -0.16 -1.41 4.74 -91.77 -0.43 -1.85 16 9 H 0.14 0.80 7.18 -51.93 -0.37 0.43 16 10 C 0.56 7.34 5.12 -10.98 -0.06 7.28 16 11 O -0.54 -8.98 14.80 -14.53 -0.22 -9.19 16 12 N -0.60 -7.41 2.97 -172.79 -0.51 -7.92 16 13 C 0.12 1.50 6.43 -3.71 -0.02 1.47 16 14 C -0.13 -1.69 5.36 -26.61 -0.14 -1.84 16 15 C -0.08 -1.13 2.15 -90.58 -0.19 -1.33 16 16 C -0.13 -2.32 5.01 -26.73 -0.13 -2.45 16 17 C 0.15 3.12 5.41 -4.04 -0.02 3.10 16 18 N -0.61 -15.60 2.93 -181.11 -0.53 -16.13 16 19 C 0.17 4.21 8.96 59.85 0.54 4.75 16 20 C -0.25 -6.98 9.68 -15.06 -0.15 -7.12 16 21 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 22 C 0.00 -0.05 5.13 -17.43 -0.09 -0.14 16 23 N -0.91 -27.09 10.52 55.49 0.58 -26.50 16 24 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C -0.13 -1.63 5.14 -26.64 -0.14 -1.76 16 29 C 0.11 1.10 6.31 -3.73 -0.02 1.07 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 1.08 7.68 -51.93 -0.40 0.68 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.24 7.01 -51.93 -0.36 0.88 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.05 0.91 6.43 -51.93 -0.33 0.58 16 44 H 0.03 0.69 7.47 -51.93 -0.39 0.30 16 45 H 0.04 1.25 7.08 -51.93 -0.37 0.88 16 46 H -0.01 -0.14 8.04 -51.93 -0.42 -0.56 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 1.03 6.50 -51.93 -0.34 0.69 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.65 5.83 -51.93 -0.30 0.35 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -35.54 402.99 -9.49 -45.03 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.74 Total: -2.20 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.36 Total: 5.79 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.46 Total: -50.56 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.97 Total: -21.29 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.54 -9.49 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715441047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.797 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds