Wall clock time and date at job start Tue Mar 31 2020 22:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00478 * 2 1 4 4 H 1.48501 * 109.47485 * 240.00483 * 3 2 1 5 5 H 1.48500 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47408 * 119.99982 * 3 2 1 7 7 C 1.38816 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00187 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47023 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47458 * 304.99640 * 11 10 9 13 13 C 1.52999 * 109.47285 * 64.99959 * 11 10 9 14 14 C 1.53001 * 109.47011 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.46915 * 299.99767 * 14 13 11 16 16 C 1.53001 * 109.47613 * 60.00320 * 15 14 13 17 17 C 1.52999 * 109.46945 * 184.99978 * 11 10 9 18 18 H 1.09006 * 109.47444 * 299.99927 * 17 11 10 19 19 N 1.46494 * 109.47558 * 59.99854 * 17 11 10 20 20 C 1.34777 * 120.00513 * 205.00311 * 19 17 11 21 21 O 1.21280 * 120.00063 * 359.97438 * 20 19 17 22 22 C 1.50702 * 120.00313 * 179.97438 * 20 19 17 23 23 N 1.46897 * 109.47073 * 173.78728 * 22 20 19 24 24 C 1.47187 * 111.00192 * 293.68433 * 23 22 20 25 25 C 1.52990 * 108.72692 * 167.63436 * 24 23 22 26 26 N 1.46011 * 109.94786 * 50.35200 * 25 24 23 27 27 C 1.33560 * 123.04283 * 341.65796 * 26 25 24 28 28 O 1.21285 * 118.67083 * 181.79604 * 27 26 25 29 29 C 1.46908 * 110.99900 * 170.79047 * 23 22 20 30 30 H 0.97002 * 119.99419 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00092 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47386 * 59.99875 * 10 9 7 33 33 H 1.09002 * 109.47097 * 299.99438 * 10 9 7 34 34 H 1.09003 * 109.46743 * 299.99926 * 13 11 10 35 35 H 1.09001 * 109.47133 * 59.99482 * 13 11 10 36 36 H 1.08997 * 109.47227 * 60.00150 * 14 13 11 37 37 H 1.09004 * 109.46907 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.47190 * 180.02562 * 15 14 13 39 39 H 1.09006 * 109.47577 * 299.99650 * 15 14 13 40 40 H 1.08996 * 109.47483 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.46694 * 59.99257 * 16 15 14 42 42 H 0.97006 * 119.99697 * 24.99839 * 19 17 11 43 43 H 1.09005 * 109.46933 * 53.79547 * 22 20 19 44 44 H 1.08994 * 109.47434 * 293.79610 * 22 20 19 45 45 H 1.08999 * 109.59521 * 47.86248 * 24 23 22 46 46 H 1.08996 * 109.72385 * 287.47803 * 24 23 22 47 47 H 1.08995 * 109.37620 * 170.46628 * 25 24 23 48 48 H 1.08997 * 109.37379 * 290.23593 * 25 24 23 49 49 H 0.96994 * 118.53529 * 161.76032 * 26 25 24 50 50 H 1.08995 * 109.38439 * 293.83025 * 29 23 22 51 51 H 1.09005 * 109.38019 * 53.61672 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0635 -4.8197 -0.0012 12 1 0.3791 -4.7131 0.8404 13 6 0.2692 -4.8109 -1.3088 14 6 -0.7246 -5.9741 -1.3097 15 6 0.0366 -7.2953 -1.1843 16 6 0.8310 -7.3043 0.1233 17 6 1.8243 -6.1412 0.1245 18 1 2.5088 -6.2480 -0.7171 19 7 2.5848 -6.1498 1.3765 20 6 3.6844 -6.9206 1.4919 21 8 4.0440 -7.6075 0.5594 22 6 4.4671 -6.9289 2.7797 23 7 5.5211 -7.9494 2.7055 24 6 4.9428 -9.3016 2.6450 25 6 6.0451 -10.2905 2.2608 26 7 7.2090 -10.0980 3.1211 27 6 7.4128 -8.9863 3.8327 28 8 8.4242 -8.8972 4.4961 29 6 6.4395 -7.8417 3.8471 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6846 -3.7146 0.8894 33 1 2.6845 -3.7146 -0.8906 34 1 -0.2727 -3.8693 -1.3983 35 1 0.9537 -4.9175 -2.1504 36 1 -1.4091 -5.8678 -0.4681 37 1 -1.2908 -5.9675 -2.2411 38 1 -0.6714 -8.1241 -1.1854 39 1 0.7211 -7.4016 -2.0260 40 1 1.3729 -8.2457 0.2128 41 1 0.1464 -7.1979 0.9649 42 1 2.2971 -5.6005 2.1226 43 1 3.7984 -7.1569 3.6098 44 1 4.9197 -5.9498 2.9362 45 1 4.1512 -9.3275 1.8962 46 1 4.5337 -9.5706 3.6188 47 1 5.6740 -11.3087 2.3770 48 1 6.3320 -10.1265 1.2222 49 1 7.8658 -10.8094 3.1780 50 1 6.9862 -6.9009 3.7841 51 1 5.8678 -7.8665 4.7749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716516704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:53 Heat of formation + Delta-G solvation = -63.805288 kcal Electronic energy + Delta-G solvation = -30166.511427 eV Core-core repulsion = 26100.386593 eV Total energy + Delta-G solvation = -4066.124834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.80801 -40.01422 -38.46499 -37.13080 -34.92489 -34.64391 -34.13524 -31.92409 -30.23035 -30.11831 -29.61270 -28.43592 -25.38680 -24.87863 -23.66108 -23.03254 -21.99141 -20.67882 -20.41248 -19.69121 -19.56074 -17.79452 -17.58389 -17.14014 -16.56541 -16.33433 -15.89179 -15.59662 -15.02129 -14.88625 -14.75497 -14.53079 -14.24416 -14.16400 -13.80873 -13.69253 -13.46769 -13.32868 -13.07698 -12.80751 -12.71619 -12.49672 -12.23417 -11.92900 -11.87859 -11.73854 -11.55312 -11.12338 -10.90526 -10.89962 -10.74417 -10.43464 -10.31842 -10.26567 -10.13983 -9.99387 -9.73152 -9.64104 -9.43794 -8.96310 -8.88995 -8.83455 -6.93994 -5.79001 -3.07273 2.27056 2.59870 2.83686 2.93438 3.42734 3.47512 3.48214 3.52962 4.17285 4.36745 4.51076 4.55721 4.69831 4.76807 4.79453 4.90028 4.93761 4.96577 5.03730 5.06318 5.15273 5.21995 5.32668 5.35221 5.53606 5.54201 5.56904 5.59852 5.64016 5.70378 5.85433 6.07394 6.09780 6.16560 6.20865 6.23504 6.25288 6.28915 6.36513 6.50953 6.53028 6.53682 6.66370 6.76018 6.88565 6.92261 7.52624 7.67992 7.85271 8.22610 8.40268 9.51546 10.09129 10.43792 11.43781 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010856 B = 0.002685 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.506569 B =10425.033123 C =12700.610433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.099 4.099 12 H 0.074 0.926 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.124 4.124 17 C 0.156 3.844 18 H 0.088 0.912 19 N -0.720 5.720 20 C 0.515 3.485 21 O -0.526 6.526 22 C 0.031 3.969 23 N -0.513 5.513 24 C 0.032 3.968 25 C 0.118 3.882 26 N -0.718 5.718 27 C 0.528 3.472 28 O -0.556 6.556 29 C 0.037 3.963 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.402 0.598 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.042 0.958 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.400 0.600 50 H 0.118 0.882 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -22.671 5.271 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.119 4.119 12 H 0.092 0.908 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.051 3.949 18 H 0.106 0.894 19 N -0.372 5.372 20 C 0.300 3.700 21 O -0.401 6.401 22 C -0.100 4.100 23 N -0.238 5.238 24 C -0.096 4.096 25 C -0.007 4.007 26 N -0.370 5.370 27 C 0.314 3.686 28 O -0.433 6.433 29 C -0.093 4.093 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.236 0.764 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.236 0.764 50 H 0.136 0.864 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.486 -22.731 4.486 23.599 hybrid contribution -0.301 0.917 1.071 1.442 sum 4.185 -21.814 5.557 22.896 Atomic orbital electron populations 1.69642 1.05084 1.25755 1.57800 1.24719 0.95510 0.97644 1.03040 0.86281 0.78535 0.83573 0.77881 1.21273 1.21706 1.21296 1.19172 0.90975 0.84208 1.42687 0.91356 1.42354 1.05794 0.99889 1.89483 1.20657 0.92997 0.85321 0.97871 1.21590 0.97702 0.93426 0.99159 0.90764 1.21496 0.97669 0.98833 0.96541 1.21596 0.98081 0.94546 1.01685 1.21483 0.98752 0.97648 0.97403 1.21869 0.97810 0.98363 0.98251 1.20983 0.92609 0.94789 0.86521 0.89411 1.46097 1.27570 1.46154 1.17330 1.20272 0.80378 0.79936 0.89406 1.90686 1.67921 1.41496 1.40037 1.22065 0.93782 0.98182 0.95938 1.62150 1.17436 1.03271 1.40983 1.22619 0.97568 0.87775 1.01682 1.21495 0.85232 0.98777 0.95169 1.45537 1.26108 1.18808 1.46525 1.19971 0.86766 0.83390 0.78429 1.90788 1.28268 1.80903 1.43377 1.22340 0.94495 0.99007 0.93464 0.93484 0.78240 0.96395 0.96434 0.90236 0.92038 0.92058 0.92103 0.92226 0.91891 0.91952 0.92011 0.76383 0.91467 0.86853 0.87324 0.93985 0.90108 0.90145 0.76441 0.86394 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.62 5.33 -59.91 -0.32 -17.94 16 10 C 0.16 3.01 5.57 -4.04 -0.02 2.99 16 11 C -0.10 -1.44 1.80 -90.62 -0.16 -1.60 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.11 -1.55 5.08 -26.73 -0.14 -1.69 16 14 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.11 -1.20 5.92 -26.73 -0.16 -1.35 16 16 C -0.12 -1.33 5.49 -26.76 -0.15 -1.48 16 17 C 0.16 1.93 1.90 -67.96 -0.13 1.80 16 18 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 19 N -0.72 -7.81 4.30 -53.83 -0.23 -8.04 16 20 C 0.52 5.77 7.25 -10.98 -0.08 5.69 16 21 O -0.53 -7.55 14.45 5.56 0.08 -7.47 16 22 C 0.03 0.26 5.42 -4.98 -0.03 0.23 16 23 N -0.51 -4.65 4.42 -237.55 -1.05 -5.70 16 24 C 0.03 0.24 5.21 -3.67 -0.02 0.22 16 25 C 0.12 0.78 7.40 -4.31 -0.03 0.75 16 26 N -0.72 -5.81 5.51 -61.10 -0.34 -6.15 16 27 C 0.53 5.62 7.81 -11.74 -0.09 5.52 16 28 O -0.56 -8.00 17.82 5.55 0.10 -7.90 16 29 C 0.04 0.32 5.56 -5.19 -0.03 0.29 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 32 H 0.02 0.34 7.31 -51.93 -0.38 -0.04 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 1.36 7.18 -51.93 -0.37 0.98 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 3.79 8.40 -40.82 -0.34 3.45 16 43 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.11 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.11 0.95 6.05 -51.93 -0.31 0.64 16 46 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.40 2.73 8.84 -40.82 -0.36 2.37 16 50 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -34.26 400.03 -10.21 -44.47 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.74 Total: 9.81 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.44 Total: 2.64 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -1.21 Total: -64.71 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.18 Total: -15.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.26 -10.21 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.333 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds