Wall clock time and date at job start Tue Mar 31 2020 22:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00478 * 2 1 4 4 H 1.48501 * 109.47485 * 240.00483 * 3 2 1 5 5 H 1.48500 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47408 * 119.99982 * 3 2 1 7 7 C 1.38816 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00187 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47023 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47458 * 304.99640 * 11 10 9 13 13 C 1.52999 * 109.47285 * 64.99959 * 11 10 9 14 14 C 1.53001 * 109.47011 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.46915 * 299.99767 * 14 13 11 16 16 C 1.53001 * 109.47613 * 60.00320 * 15 14 13 17 17 C 1.52999 * 109.46945 * 184.99978 * 11 10 9 18 18 H 1.09006 * 109.47444 * 299.99927 * 17 11 10 19 19 N 1.46494 * 109.47558 * 59.99854 * 17 11 10 20 20 C 1.34777 * 120.00513 * 205.00311 * 19 17 11 21 21 O 1.21280 * 120.00063 * 359.97438 * 20 19 17 22 22 C 1.50702 * 120.00313 * 179.97438 * 20 19 17 23 23 N 1.46897 * 109.47073 * 173.78728 * 22 20 19 24 24 C 1.47187 * 111.00192 * 293.68433 * 23 22 20 25 25 C 1.52990 * 108.72692 * 167.63436 * 24 23 22 26 26 N 1.46011 * 109.94786 * 50.35200 * 25 24 23 27 27 C 1.33560 * 123.04283 * 341.65796 * 26 25 24 28 28 O 1.21285 * 118.67083 * 181.79604 * 27 26 25 29 29 C 1.46908 * 110.99900 * 170.79047 * 23 22 20 30 30 H 0.97002 * 119.99419 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00092 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47386 * 59.99875 * 10 9 7 33 33 H 1.09002 * 109.47097 * 299.99438 * 10 9 7 34 34 H 1.09003 * 109.46743 * 299.99926 * 13 11 10 35 35 H 1.09001 * 109.47133 * 59.99482 * 13 11 10 36 36 H 1.08997 * 109.47227 * 60.00150 * 14 13 11 37 37 H 1.09004 * 109.46907 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.47190 * 180.02562 * 15 14 13 39 39 H 1.09006 * 109.47577 * 299.99650 * 15 14 13 40 40 H 1.08996 * 109.47483 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.46694 * 59.99257 * 16 15 14 42 42 H 0.97006 * 119.99697 * 24.99839 * 19 17 11 43 43 H 1.09005 * 109.46933 * 53.79547 * 22 20 19 44 44 H 1.08994 * 109.47434 * 293.79610 * 22 20 19 45 45 H 1.08999 * 109.59521 * 47.86248 * 24 23 22 46 46 H 1.08996 * 109.72385 * 287.47803 * 24 23 22 47 47 H 1.08995 * 109.37620 * 170.46628 * 25 24 23 48 48 H 1.08997 * 109.37379 * 290.23593 * 25 24 23 49 49 H 0.96994 * 118.53529 * 161.76032 * 26 25 24 50 50 H 1.08995 * 109.38439 * 293.83025 * 29 23 22 51 51 H 1.09005 * 109.38019 * 53.61672 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0635 -4.8197 -0.0012 12 1 0.3791 -4.7131 0.8404 13 6 0.2692 -4.8109 -1.3088 14 6 -0.7246 -5.9741 -1.3097 15 6 0.0366 -7.2953 -1.1843 16 6 0.8310 -7.3043 0.1233 17 6 1.8243 -6.1412 0.1245 18 1 2.5088 -6.2480 -0.7171 19 7 2.5848 -6.1498 1.3765 20 6 3.6844 -6.9206 1.4919 21 8 4.0440 -7.6075 0.5594 22 6 4.4671 -6.9289 2.7797 23 7 5.5211 -7.9494 2.7055 24 6 4.9428 -9.3016 2.6450 25 6 6.0451 -10.2905 2.2608 26 7 7.2090 -10.0980 3.1211 27 6 7.4128 -8.9863 3.8327 28 8 8.4242 -8.8972 4.4961 29 6 6.4395 -7.8417 3.8471 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6846 -3.7146 0.8894 33 1 2.6845 -3.7146 -0.8906 34 1 -0.2727 -3.8693 -1.3983 35 1 0.9537 -4.9175 -2.1504 36 1 -1.4091 -5.8678 -0.4681 37 1 -1.2908 -5.9675 -2.2411 38 1 -0.6714 -8.1241 -1.1854 39 1 0.7211 -7.4016 -2.0260 40 1 1.3729 -8.2457 0.2128 41 1 0.1464 -7.1979 0.9649 42 1 2.2971 -5.6005 2.1226 43 1 3.7984 -7.1569 3.6098 44 1 4.9197 -5.9498 2.9362 45 1 4.1512 -9.3275 1.8962 46 1 4.5337 -9.5706 3.6188 47 1 5.6740 -11.3087 2.3770 48 1 6.3320 -10.1265 1.2222 49 1 7.8658 -10.8094 3.1780 50 1 6.9862 -6.9009 3.7841 51 1 5.8678 -7.8665 4.7749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716516704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:52 Heat of formation + Delta-G solvation = -90.563669 kcal Electronic energy + Delta-G solvation = -30167.671758 eV Core-core repulsion = 26100.386593 eV Total energy + Delta-G solvation = -4067.285164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.58465 -40.94904 -39.47294 -37.96023 -36.39577 -35.60930 -35.10225 -33.66121 -31.19383 -31.10088 -30.77714 -29.28794 -26.93545 -25.64843 -24.70142 -24.38492 -23.02346 -21.95088 -21.34565 -20.66518 -20.26537 -19.24611 -18.52181 -18.20254 -17.37868 -17.29832 -16.72693 -16.67394 -16.33795 -15.84543 -15.65457 -15.48970 -15.45741 -15.18243 -15.03828 -14.84461 -14.59789 -14.38750 -14.33799 -14.00118 -13.59765 -13.42499 -13.29918 -13.03086 -12.86405 -12.70770 -12.65834 -12.53537 -12.39071 -12.18632 -12.07994 -11.90156 -11.83364 -11.47921 -11.29012 -11.17329 -11.08596 -10.91431 -10.61762 -10.13788 -9.89633 -9.49125 -8.96734 -7.94135 -5.21748 1.47970 1.48444 1.49951 1.56104 1.73826 2.05552 2.27508 2.56568 2.83463 3.39373 3.51613 3.59332 3.72439 3.82506 3.89887 3.98198 4.12442 4.13887 4.20862 4.30918 4.36131 4.38108 4.44048 4.50114 4.52488 4.54165 4.56195 4.58350 4.61456 4.77084 4.89471 4.93069 4.98510 5.08691 5.16770 5.21647 5.28282 5.33714 5.35354 5.46910 5.50120 5.56246 5.61049 5.63814 5.70166 5.89908 6.22047 6.28515 6.67308 7.11574 7.35619 7.36549 8.11830 8.35794 9.28891 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010856 B = 0.002685 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.506569 B =10425.033123 C =12700.610433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.740 5.740 10 C 0.160 3.840 11 C -0.085 4.085 12 H 0.079 0.921 13 C -0.106 4.106 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.115 4.115 17 C 0.165 3.835 18 H 0.065 0.935 19 N -0.717 5.717 20 C 0.514 3.486 21 O -0.560 6.560 22 C 0.036 3.964 23 N -0.532 5.532 24 C 0.032 3.968 25 C 0.118 3.882 26 N -0.709 5.709 27 C 0.522 3.478 28 O -0.602 6.602 29 C 0.043 3.957 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.027 0.973 33 H 0.001 0.999 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.411 0.589 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.069 0.931 49 H 0.405 0.595 50 H 0.116 0.884 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -24.074 6.286 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.034 3.966 11 C -0.104 4.104 12 H 0.097 0.903 13 C -0.144 4.144 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.154 4.154 17 C 0.060 3.940 18 H 0.083 0.917 19 N -0.368 5.368 20 C 0.301 3.699 21 O -0.438 6.438 22 C -0.094 4.094 23 N -0.259 5.259 24 C -0.096 4.096 25 C -0.005 4.005 26 N -0.359 5.359 27 C 0.309 3.691 28 O -0.484 6.484 29 C -0.087 4.087 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.247 0.753 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.130 0.870 48 H 0.087 0.913 49 H 0.242 0.758 50 H 0.134 0.866 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.152 -24.174 5.494 25.136 hybrid contribution -0.174 1.297 0.682 1.476 sum 3.978 -22.877 6.176 24.028 Atomic orbital electron populations 1.69788 1.06410 1.26084 1.59418 1.25477 0.96350 1.00798 1.03748 0.85288 0.77281 0.79550 0.78104 1.20855 1.22089 1.20308 1.19536 0.91301 0.85544 1.41301 0.91203 1.42516 1.05612 1.00871 1.89265 1.20776 0.93689 0.84985 0.97189 1.21424 0.96814 0.92789 0.99361 0.90261 1.21439 0.97974 0.98813 0.96222 1.21537 0.97412 0.93768 1.02451 1.21471 0.98913 0.97484 0.97044 1.21792 0.97406 0.97247 0.98917 1.20748 0.92459 0.94151 0.86659 0.91727 1.46047 1.27559 1.46296 1.16945 1.20785 0.80055 0.79029 0.90030 1.90676 1.68708 1.42917 1.41500 1.22070 0.93854 0.98558 0.94957 1.62103 1.18096 1.04132 1.41536 1.22627 0.97442 0.87280 1.02242 1.21619 0.84474 1.00364 0.94089 1.45560 1.26516 1.18274 1.45595 1.20362 0.86493 0.84223 0.78028 1.90764 1.30178 1.81887 1.45571 1.22276 0.94181 0.97996 0.94257 0.93992 0.79142 0.95519 0.98053 0.93349 0.92937 0.91409 0.91320 0.90004 0.92426 0.91752 0.90711 0.75339 0.88392 0.86029 0.88362 0.92236 0.86981 0.91284 0.75826 0.86560 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.87 13.06 21.65 0.28 -57.58 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.24 -13.47 9.99 84.04 0.84 -12.63 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -36.13 5.33 -343.45 -1.83 -37.96 16 10 C 0.16 6.08 5.57 86.38 0.48 6.56 16 11 C -0.08 -2.41 1.80 -10.79 -0.02 -2.43 16 12 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.11 -3.09 5.08 30.59 0.16 -2.94 16 14 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 15 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 16 C -0.12 -2.20 5.49 30.58 0.17 -2.03 16 17 C 0.17 3.92 1.90 44.97 0.09 4.00 16 18 H 0.06 1.87 7.58 -2.38 -0.02 1.85 16 19 N -0.72 -14.35 4.30 -442.62 -1.91 -16.26 16 20 C 0.51 10.71 7.25 87.66 0.64 11.34 16 21 O -0.56 -15.62 14.45 -3.03 -0.04 -15.67 16 22 C 0.04 0.51 5.42 85.56 0.46 0.97 16 23 N -0.53 -8.64 4.42 -905.46 -4.01 -12.65 16 24 C 0.03 0.42 5.21 86.24 0.45 0.86 16 25 C 0.12 1.35 7.40 86.47 0.64 1.99 16 26 N -0.71 -10.55 5.51 -466.29 -2.57 -13.12 16 27 C 0.52 10.63 7.81 87.71 0.69 11.31 16 28 O -0.60 -17.36 17.82 -3.05 -0.05 -17.41 16 29 C 0.04 0.66 5.56 85.42 0.48 1.14 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.38 19.38 6.85 -92.71 -0.64 18.74 16 32 H 0.03 0.98 7.31 -2.39 -0.02 0.96 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.05 1.70 7.18 -2.39 -0.02 1.69 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.41 6.85 8.40 -92.70 -0.78 6.07 16 43 H 0.10 0.80 8.12 -2.38 -0.02 0.79 16 44 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 45 H 0.10 1.54 6.05 -2.39 -0.01 1.53 16 46 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 47 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.41 5.11 8.84 -92.71 -0.82 4.29 16 50 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.10 1.06 8.12 -2.38 -0.02 1.04 16 Total: -1.00 -75.05 400.03 -3.49 -78.54 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -1.28 Total: 34.03 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.89 Total: 10.40 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -10.03 Total: -137.57 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.10 Total: -33.08 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -75.05 -3.49 -78.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.023 kcal (2) G-P(sol) polarization free energy of solvation -75.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds