Wall clock time and date at job start Tue Mar 31 2020 21:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00099 * 2 1 4 4 C 1.52995 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.53011 * 115.54981 * 294.68311 * 4 3 2 6 6 C 1.50709 * 109.46651 * 295.78048 * 5 4 3 7 7 O 1.21279 * 120.00233 * 353.96887 * 6 5 4 8 8 N 1.34773 * 119.99457 * 173.96353 * 6 5 4 9 9 C 1.46500 * 119.99665 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46985 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.82255 * 59.43668 * 10 9 8 12 12 C 1.54475 * 109.90743 * 180.37696 * 10 9 8 13 13 C 1.55499 * 102.38657 * 140.92071 * 12 10 9 14 14 C 1.53879 * 100.76210 * 327.02552 * 13 12 10 15 15 C 1.52382 * 115.68361 * 263.23855 * 14 13 12 16 16 N 1.47273 * 87.70059 * 218.74238 * 15 14 13 17 17 C 1.36936 * 135.93085 * 206.16899 * 16 15 14 18 18 H 1.07998 * 120.00167 * 357.35159 * 17 16 15 19 19 C 1.38813 * 119.99674 * 177.34297 * 17 16 15 20 20 N 1.31618 * 119.99924 * 175.59361 * 19 17 16 21 21 Si 1.86798 * 120.00162 * 355.59173 * 19 17 16 22 22 H 1.48501 * 109.47247 * 176.07286 * 21 19 17 23 23 H 1.48501 * 109.47223 * 56.06920 * 21 19 17 24 24 H 1.48507 * 109.47121 * 296.07111 * 21 19 17 25 25 C 1.47273 * 88.13084 * 26.43311 * 16 15 14 26 26 O 1.42408 * 106.66735 * 34.97902 * 14 13 12 27 27 C 1.53000 * 117.50041 * 80.34621 * 4 3 2 28 28 C 1.52998 * 117.50154 * 149.00822 * 4 3 2 29 29 H 1.09007 * 109.46572 * 60.00061 * 1 2 3 30 30 H 1.08995 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47385 * 300.00170 * 1 2 3 32 32 H 1.08998 * 109.47167 * 60.00108 * 3 2 1 33 33 H 1.08999 * 109.47170 * 300.00131 * 3 2 1 34 34 H 1.08995 * 109.47030 * 175.78662 * 5 4 3 35 35 H 1.08989 * 109.47067 * 55.78229 * 5 4 3 36 36 H 0.96996 * 120.00240 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.47003 * 59.99966 * 9 8 6 38 38 H 1.09002 * 109.47112 * 299.99495 * 9 8 6 39 39 H 1.09005 * 110.82299 * 259.14663 * 12 10 9 40 40 H 1.09006 * 110.82355 * 22.49767 * 12 10 9 41 41 H 1.09001 * 111.15741 * 209.15337 * 13 12 10 42 42 H 1.08995 * 111.16063 * 84.90434 * 13 12 10 43 43 H 1.09002 * 113.51111 * 104.03672 * 15 14 13 44 44 H 1.09002 * 113.56935 * 333.46366 * 15 14 13 45 45 H 0.96998 * 120.00070 * 5.11921 * 20 19 17 46 46 H 1.09001 * 113.51737 * 88.27330 * 25 16 15 47 47 H 1.08999 * 113.51270 * 218.85919 * 25 16 15 48 48 H 1.09000 * 117.49941 * 215.00130 * 27 4 3 49 49 H 1.09004 * 117.49893 * 0.02760 * 27 4 3 50 50 H 1.08998 * 117.49348 * 359.97438 * 28 4 3 51 51 H 1.09003 * 117.49818 * 144.99752 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1473 0.5580 1.2554 6 6 3.8750 1.4445 2.4433 7 8 3.3500 2.5263 2.2851 8 7 4.2148 1.0351 3.6815 9 6 3.9497 1.8965 4.8364 10 6 4.4287 1.2009 6.1122 11 1 5.4970 0.9963 6.0428 12 6 4.1452 2.0971 7.3381 13 6 3.6950 1.0640 8.4095 14 6 2.9886 0.0218 7.5248 15 6 1.4738 0.1561 7.4273 16 7 1.4005 -1.3143 7.4635 17 6 0.5254 -2.2672 7.0147 18 1 -0.3911 -1.9713 6.5259 19 6 0.8163 -3.6134 7.1879 20 7 -0.0628 -4.5273 6.8355 21 14 2.4556 -4.1279 7.9211 22 1 2.4820 -5.6032 8.0879 23 1 2.6323 -3.4768 9.2440 24 1 3.5557 -3.7125 7.0141 25 6 2.6763 -1.3117 8.1992 26 8 3.7086 -0.0271 6.2971 27 6 4.2223 0.9017 -1.3369 28 6 4.3319 2.2884 -0.6980 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 5.2236 0.4518 1.1205 35 1 3.7037 -0.4230 1.4248 36 1 4.6350 0.1700 3.8081 37 1 2.8793 2.0897 4.9074 38 1 4.4820 2.8400 4.7158 39 1 5.0495 2.6161 7.6561 40 1 3.3479 2.8083 7.1221 41 1 3.0007 1.5118 9.1206 42 1 4.5531 0.6287 8.9215 43 1 1.1351 0.5853 6.4844 44 1 1.0220 0.6356 8.2957 45 1 -0.8819 -4.2649 6.3871 46 1 2.5552 -1.2348 9.2797 47 1 3.3493 -2.1174 7.9055 48 1 5.1100 0.2694 -1.3230 49 1 3.5876 0.8021 -2.2175 50 1 3.7692 3.1004 -1.1585 51 1 5.2917 2.5683 -0.2638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717223096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:01 Heat of formation + Delta-G solvation = -32.929785 kcal Electronic energy + Delta-G solvation = -30649.102730 eV Core-core repulsion = 26552.024007 eV Total energy + Delta-G solvation = -4097.078723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.43666 -39.90683 -38.30691 -36.93460 -36.58456 -34.40215 -32.35892 -32.09561 -30.46867 -29.01778 -27.96746 -26.79202 -25.54908 -25.46489 -23.82609 -22.57040 -21.56259 -21.19531 -20.64359 -19.31924 -19.22592 -17.42078 -17.11574 -16.72858 -16.38000 -16.11523 -15.93865 -15.83804 -15.61158 -14.97991 -14.58881 -14.46953 -14.16531 -13.82571 -13.69336 -13.56736 -13.16165 -13.06279 -13.02790 -12.68632 -12.37915 -12.30087 -11.94980 -11.74836 -11.70489 -11.62050 -11.60129 -11.39492 -11.10275 -10.84995 -10.58803 -10.53946 -10.51163 -10.35398 -10.20923 -9.77865 -9.48032 -9.43681 -9.08702 -8.99091 -8.92960 -8.78564 -7.12161 -6.25382 -3.16611 2.71514 3.09800 3.42381 3.46065 3.50125 3.69023 3.84429 3.97723 4.45529 4.49313 4.58307 4.63974 4.64192 4.74227 4.76855 4.84846 4.90406 4.98292 5.09413 5.16217 5.21651 5.31890 5.35511 5.37719 5.46943 5.48265 5.48906 5.54097 5.57526 5.66669 5.70228 5.71425 5.72207 5.84396 5.88713 5.93657 5.94738 5.95909 6.06813 6.15808 6.20071 6.31324 6.39622 6.45805 6.53126 7.11658 7.14275 7.45384 7.56925 8.28139 8.29473 9.02776 9.55316 10.39380 11.26958 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003480 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.376930 B = 8043.936879 C = 9749.913279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.096 3.904 4 C -0.102 4.102 5 C -0.104 4.104 6 C 0.517 3.483 7 O -0.544 6.544 8 N -0.722 5.722 9 C 0.115 3.885 10 C 0.063 3.937 11 H 0.084 0.916 12 C -0.144 4.144 13 C -0.139 4.139 14 C 0.070 3.930 15 C 0.111 3.889 16 N -0.621 5.621 17 C -0.298 4.298 18 H 0.081 0.919 19 C -0.025 4.025 20 N -0.937 5.937 21 Si 1.074 2.926 22 H -0.297 1.297 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.106 3.894 26 O -0.332 6.332 27 C -0.167 4.167 28 C -0.155 4.155 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.406 0.594 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.259 0.741 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 15.863 -9.209 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C 0.019 3.981 4 C -0.102 4.102 5 C -0.143 4.143 6 C 0.303 3.697 7 O -0.422 6.422 8 N -0.374 5.374 9 C -0.009 4.009 10 C 0.005 3.995 11 H 0.102 0.898 12 C -0.182 4.182 13 C -0.177 4.177 14 C 0.029 3.971 15 C -0.016 4.016 16 N -0.349 5.349 17 C -0.424 4.424 18 H 0.099 0.901 19 C -0.224 4.224 20 N -0.580 5.580 21 Si 0.907 3.093 22 H -0.224 1.224 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.019 4.019 26 O -0.250 6.250 27 C -0.204 4.204 28 C -0.192 4.192 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.240 0.760 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.113 0.887 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.730 14.791 -9.060 21.515 hybrid contribution -1.068 1.348 -0.250 1.737 sum 11.663 16.139 -9.310 21.981 Atomic orbital electron populations 1.22730 0.80928 1.02941 0.99771 1.87861 1.19627 1.27815 1.95422 1.22024 0.90480 0.84688 1.00879 1.20839 0.92804 1.03949 0.92642 1.21158 1.02028 0.99997 0.91156 1.20595 0.77813 0.87134 0.84134 1.90647 1.42867 1.22850 1.85802 1.45891 1.63157 1.22214 1.06097 1.21743 1.01810 0.93126 0.84258 1.23093 0.96535 0.85876 0.93989 0.89823 1.23063 1.02494 0.98237 0.94372 1.22998 1.01039 0.95824 0.97861 1.23163 0.92887 0.96739 0.84276 1.22684 0.92113 0.87566 0.99274 1.45914 1.24000 1.01048 1.63895 1.20132 1.00102 0.86276 1.35919 0.90110 1.25678 1.04709 0.90694 1.01271 1.70922 1.10464 1.34086 1.42555 0.83660 0.74990 0.74733 0.75896 1.22416 1.21800 1.21857 1.22833 0.89323 0.94258 0.95532 1.88373 1.62909 1.34283 1.39444 1.23077 1.02584 0.99017 0.95745 1.22948 1.01344 0.92103 1.02809 0.94439 0.89424 0.93963 0.91452 0.93624 0.88781 0.87657 0.75952 0.91085 0.90874 0.90008 0.90125 0.89543 0.90143 0.93344 0.93594 0.93046 0.92562 0.92532 0.88533 0.88547 0.88712 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.39 -5.55 10.64 -35.23 -0.37 -5.92 16 3 C 0.10 1.24 5.54 37.16 0.21 1.44 16 4 C -0.10 -1.17 1.28 -154.51 -0.20 -1.37 16 5 C -0.10 -1.18 5.53 -27.87 -0.15 -1.34 16 6 C 0.52 7.11 7.59 -10.98 -0.08 7.03 16 7 O -0.54 -8.91 14.54 5.56 0.08 -8.83 16 8 N -0.72 -9.35 5.47 -60.29 -0.33 -9.68 16 9 C 0.11 1.45 5.24 -4.04 -0.02 1.43 16 10 C 0.06 0.78 3.61 -25.95 -0.09 0.69 16 11 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.14 -1.47 6.56 -24.63 -0.16 -1.63 16 13 C -0.14 -1.70 6.49 -24.95 -0.16 -1.86 16 14 C 0.07 1.24 1.56 -90.66 -0.14 1.09 16 15 C 0.11 2.24 8.24 -7.87 -0.06 2.17 16 16 N -0.62 -15.81 3.69 -184.79 -0.68 -16.49 16 17 C -0.30 -8.91 11.09 -15.06 -0.17 -9.08 16 18 H 0.08 2.55 8.05 -52.49 -0.42 2.13 16 19 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 20 N -0.94 -30.33 13.70 55.49 0.76 -29.57 16 21 Si 1.07 27.60 25.01 -169.99 -4.25 23.35 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 23 H -0.29 -6.85 6.33 56.52 0.36 -6.49 16 24 H -0.29 -7.19 6.70 56.52 0.38 -6.81 16 25 C 0.11 2.28 5.43 -7.73 -0.04 2.23 16 26 O -0.33 -5.82 10.69 -35.23 -0.38 -6.19 16 27 C -0.17 -1.54 9.95 -26.69 -0.27 -1.81 16 28 C -0.15 -1.49 9.88 -26.69 -0.26 -1.76 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 33 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.11 1.29 8.13 -51.94 -0.42 0.86 16 36 H 0.41 4.85 8.40 -40.82 -0.34 4.51 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.09 0.96 7.93 -51.93 -0.41 0.54 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.85 7.99 -51.93 -0.41 0.43 16 45 H 0.26 8.30 8.73 -40.82 -0.36 7.95 16 46 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 47 H 0.06 1.29 4.13 -51.93 -0.21 1.08 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -36.53 406.19 -8.60 -45.13 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.95 Total: 4.20 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.59 Total: -2.12 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.25 Total: -55.73 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.67 Total: -20.95 kcal Atomic # 14 Polarization: 27.60 SS G_CDS: -4.25 Total: 23.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.53 -8.60 -45.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717223096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.198 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds