Wall clock time and date at job start Tue Mar 31 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00099 * 2 1 4 4 C 1.52995 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.53011 * 115.54981 * 294.68311 * 4 3 2 6 6 C 1.50709 * 109.46651 * 295.78048 * 5 4 3 7 7 O 1.21279 * 120.00233 * 353.96887 * 6 5 4 8 8 N 1.34773 * 119.99457 * 173.96353 * 6 5 4 9 9 C 1.46500 * 119.99665 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46985 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.82255 * 59.43668 * 10 9 8 12 12 C 1.54475 * 109.90743 * 180.37696 * 10 9 8 13 13 C 1.55499 * 102.38657 * 140.92071 * 12 10 9 14 14 C 1.53879 * 100.76210 * 327.02552 * 13 12 10 15 15 C 1.52382 * 115.68361 * 263.23855 * 14 13 12 16 16 N 1.47273 * 87.70059 * 218.74238 * 15 14 13 17 17 C 1.36936 * 135.93085 * 206.16899 * 16 15 14 18 18 H 1.07998 * 120.00167 * 357.35159 * 17 16 15 19 19 C 1.38813 * 119.99674 * 177.34297 * 17 16 15 20 20 N 1.31618 * 119.99924 * 175.59361 * 19 17 16 21 21 Si 1.86798 * 120.00162 * 355.59173 * 19 17 16 22 22 H 1.48501 * 109.47247 * 176.07286 * 21 19 17 23 23 H 1.48501 * 109.47223 * 56.06920 * 21 19 17 24 24 H 1.48507 * 109.47121 * 296.07111 * 21 19 17 25 25 C 1.47273 * 88.13084 * 26.43311 * 16 15 14 26 26 O 1.42408 * 106.66735 * 34.97902 * 14 13 12 27 27 C 1.53000 * 117.50041 * 80.34621 * 4 3 2 28 28 C 1.52998 * 117.50154 * 149.00822 * 4 3 2 29 29 H 1.09007 * 109.46572 * 60.00061 * 1 2 3 30 30 H 1.08995 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47385 * 300.00170 * 1 2 3 32 32 H 1.08998 * 109.47167 * 60.00108 * 3 2 1 33 33 H 1.08999 * 109.47170 * 300.00131 * 3 2 1 34 34 H 1.08995 * 109.47030 * 175.78662 * 5 4 3 35 35 H 1.08989 * 109.47067 * 55.78229 * 5 4 3 36 36 H 0.96996 * 120.00240 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.47003 * 59.99966 * 9 8 6 38 38 H 1.09002 * 109.47112 * 299.99495 * 9 8 6 39 39 H 1.09005 * 110.82299 * 259.14663 * 12 10 9 40 40 H 1.09006 * 110.82355 * 22.49767 * 12 10 9 41 41 H 1.09001 * 111.15741 * 209.15337 * 13 12 10 42 42 H 1.08995 * 111.16063 * 84.90434 * 13 12 10 43 43 H 1.09002 * 113.51111 * 104.03672 * 15 14 13 44 44 H 1.09002 * 113.56935 * 333.46366 * 15 14 13 45 45 H 0.96998 * 120.00070 * 5.11921 * 20 19 17 46 46 H 1.09001 * 113.51737 * 88.27330 * 25 16 15 47 47 H 1.08999 * 113.51270 * 218.85919 * 25 16 15 48 48 H 1.09000 * 117.49941 * 215.00130 * 27 4 3 49 49 H 1.09004 * 117.49893 * 0.02760 * 27 4 3 50 50 H 1.08998 * 117.49348 * 359.97438 * 28 4 3 51 51 H 1.09003 * 117.49818 * 144.99752 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1473 0.5580 1.2554 6 6 3.8750 1.4445 2.4433 7 8 3.3500 2.5263 2.2851 8 7 4.2148 1.0351 3.6815 9 6 3.9497 1.8965 4.8364 10 6 4.4287 1.2009 6.1122 11 1 5.4970 0.9963 6.0428 12 6 4.1452 2.0971 7.3381 13 6 3.6950 1.0640 8.4095 14 6 2.9886 0.0218 7.5248 15 6 1.4738 0.1561 7.4273 16 7 1.4005 -1.3143 7.4635 17 6 0.5254 -2.2672 7.0147 18 1 -0.3911 -1.9713 6.5259 19 6 0.8163 -3.6134 7.1879 20 7 -0.0628 -4.5273 6.8355 21 14 2.4556 -4.1279 7.9211 22 1 2.4820 -5.6032 8.0879 23 1 2.6323 -3.4768 9.2440 24 1 3.5557 -3.7125 7.0141 25 6 2.6763 -1.3117 8.1992 26 8 3.7086 -0.0271 6.2971 27 6 4.2223 0.9017 -1.3369 28 6 4.3319 2.2884 -0.6980 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 5.2236 0.4518 1.1205 35 1 3.7037 -0.4230 1.4248 36 1 4.6350 0.1700 3.8081 37 1 2.8793 2.0897 4.9074 38 1 4.4820 2.8400 4.7158 39 1 5.0495 2.6161 7.6561 40 1 3.3479 2.8083 7.1221 41 1 3.0007 1.5118 9.1206 42 1 4.5531 0.6287 8.9215 43 1 1.1351 0.5853 6.4844 44 1 1.0220 0.6356 8.2957 45 1 -0.8819 -4.2649 6.3871 46 1 2.5552 -1.2348 9.2797 47 1 3.3493 -2.1174 7.9055 48 1 5.1100 0.2694 -1.3230 49 1 3.5876 0.8021 -2.2175 50 1 3.7692 3.1004 -1.1585 51 1 5.2917 2.5683 -0.2638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717223096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:00 Heat of formation + Delta-G solvation = -60.996242 kcal Electronic energy + Delta-G solvation = -30650.319783 eV Core-core repulsion = 26552.024007 eV Total energy + Delta-G solvation = -4098.295776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.69571 -40.98530 -39.33744 -38.33884 -37.57136 -35.59068 -34.49074 -33.19836 -31.58827 -30.27681 -29.07769 -28.27994 -27.19427 -26.48637 -25.10606 -23.30789 -22.90644 -22.54295 -21.70421 -20.77761 -20.17673 -19.56401 -18.13424 -17.80805 -17.54086 -17.38697 -17.13618 -16.92373 -16.60810 -16.14989 -16.08592 -15.57120 -15.53389 -15.32055 -15.09948 -14.83269 -14.55973 -14.39374 -14.20290 -13.79933 -13.47015 -13.34408 -13.33226 -12.98517 -12.66640 -12.62791 -12.57041 -12.50616 -12.38676 -12.29401 -12.13282 -12.02038 -11.54932 -11.38479 -11.27352 -11.10939 -11.07722 -10.98732 -10.80675 -10.47038 -10.32287 -10.06354 -9.23327 -8.67124 -5.48341 1.35522 1.48631 1.64594 1.68110 2.14348 2.52586 2.53467 2.67890 2.98603 3.11002 3.20996 3.41557 3.64691 3.67166 3.71782 3.75837 3.84718 3.94072 3.95010 4.18608 4.19549 4.29278 4.37216 4.40328 4.43566 4.46980 4.53690 4.53967 4.56763 4.59586 4.70233 4.71126 4.74468 4.79417 4.81585 4.86006 4.89823 4.94467 5.01884 5.04210 5.08031 5.11630 5.19202 5.24689 5.32575 5.44129 5.91477 6.12840 6.23816 6.53909 6.67159 7.24722 7.30375 8.23932 8.87884 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003480 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.376930 B = 8043.936879 C = 9749.913279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.097 3.903 4 C -0.130 4.130 5 C -0.098 4.098 6 C 0.511 3.489 7 O -0.574 6.574 8 N -0.721 5.721 9 C 0.116 3.884 10 C 0.061 3.939 11 H 0.112 0.888 12 C -0.134 4.134 13 C -0.128 4.128 14 C 0.088 3.912 15 C 0.105 3.895 16 N -0.658 5.658 17 C -0.290 4.290 18 H 0.041 0.959 19 C -0.086 4.086 20 N -0.972 5.972 21 Si 1.116 2.884 22 H -0.304 1.304 23 H -0.253 1.253 24 H -0.278 1.278 25 C 0.095 3.905 26 O -0.365 6.365 27 C -0.150 4.150 28 C -0.148 4.148 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.411 0.589 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.243 0.757 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.113 0.887 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.149 17.798 -8.267 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C 0.020 3.980 4 C -0.131 4.131 5 C -0.138 4.138 6 C 0.298 3.702 7 O -0.455 6.455 8 N -0.373 5.373 9 C -0.008 4.008 10 C 0.003 3.997 11 H 0.129 0.871 12 C -0.172 4.172 13 C -0.166 4.166 14 C 0.047 3.953 15 C -0.021 4.021 16 N -0.387 5.387 17 C -0.417 4.417 18 H 0.059 0.941 19 C -0.277 4.277 20 N -0.618 5.618 21 Si 0.942 3.058 22 H -0.232 1.232 23 H -0.178 1.178 24 H -0.206 1.206 25 C -0.029 4.029 26 O -0.284 6.284 27 C -0.187 4.187 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.246 0.754 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.132 0.868 49 H 0.118 0.882 50 H 0.115 0.885 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.570 16.792 -8.097 24.941 hybrid contribution -2.358 0.868 -0.627 2.590 sum 14.211 17.660 -8.725 24.289 Atomic orbital electron populations 1.22847 0.80197 1.03495 1.00308 1.87829 1.20671 1.28821 1.95486 1.22030 0.91885 0.83975 1.00068 1.20914 0.91894 1.06364 0.93918 1.21161 1.03816 0.98551 0.90240 1.21066 0.77144 0.87025 0.84917 1.90625 1.44206 1.24332 1.86288 1.45969 1.62733 1.22450 1.06132 1.21764 1.00208 0.94100 0.84713 1.23387 0.97178 0.84637 0.94449 0.87059 1.23107 1.04357 0.97464 0.92258 1.23011 1.01538 0.94376 0.97658 1.22849 0.91347 0.95810 0.85343 1.22981 0.95279 0.84650 0.99173 1.46041 1.24866 1.02743 1.65049 1.19979 0.99406 0.87859 1.34461 0.94150 1.27123 1.07488 0.91017 1.02073 1.71030 1.10855 1.34968 1.44933 0.83182 0.71222 0.74142 0.77235 1.23228 1.17838 1.20562 1.23135 0.86809 0.96296 0.96646 1.88344 1.63212 1.37149 1.39734 1.23158 1.02542 0.98750 0.94243 1.23014 1.01192 0.92214 1.02040 0.92130 0.88929 0.95180 0.94364 0.92249 0.85710 0.88960 0.75396 0.94185 0.88957 0.86132 0.90013 0.87820 0.87870 0.95358 0.91059 0.94785 0.90167 0.93586 0.86840 0.88169 0.88498 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -12.05 10.64 -148.98 -1.58 -13.64 16 3 C 0.10 2.57 5.54 71.98 0.40 2.97 16 4 C -0.13 -2.91 1.28 -52.18 -0.07 -2.97 16 5 C -0.10 -2.18 5.53 29.85 0.17 -2.02 16 6 C 0.51 14.03 7.59 87.66 0.67 14.69 16 7 O -0.57 -19.11 14.54 -3.03 -0.04 -19.16 16 8 N -0.72 -18.19 5.47 -463.05 -2.53 -20.73 16 9 C 0.12 2.78 5.24 86.38 0.45 3.24 16 10 C 0.06 1.30 3.61 31.10 0.11 1.41 16 11 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 12 C -0.13 -2.10 6.56 31.96 0.21 -1.89 16 13 C -0.13 -2.49 6.49 31.75 0.21 -2.29 16 14 C 0.09 2.85 1.56 -10.81 -0.02 2.84 16 15 C 0.10 4.18 8.24 83.48 0.69 4.87 16 16 N -0.66 -33.66 3.69 -739.97 -2.73 -36.39 16 17 C -0.29 -18.01 11.09 84.03 0.93 -17.07 16 18 H 0.04 2.74 8.05 -2.91 -0.02 2.72 16 19 C -0.09 -5.41 5.50 84.86 0.47 -4.95 16 20 N -0.97 -65.65 13.70 21.65 0.30 -65.35 16 21 Si 1.12 55.80 25.01 68.60 1.72 57.52 16 22 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 23 H -0.25 -11.01 6.33 99.48 0.63 -10.38 16 24 H -0.28 -13.20 6.70 99.48 0.67 -12.54 16 25 C 0.10 3.87 5.43 83.57 0.45 4.32 16 26 O -0.37 -12.11 10.69 -148.98 -1.59 -13.70 16 27 C -0.15 -2.46 9.95 30.62 0.30 -2.16 16 28 C -0.15 -2.60 9.88 30.62 0.30 -2.30 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 1.22 6.54 -2.39 -0.02 1.20 16 33 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.12 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.09 2.29 8.13 -2.39 -0.02 2.27 16 36 H 0.41 9.43 8.40 -92.71 -0.78 8.65 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 1.30 7.85 -2.38 -0.02 1.28 16 41 H 0.10 1.73 7.93 -2.39 -0.02 1.71 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 2.49 7.99 -2.39 -0.02 2.47 16 45 H 0.24 16.57 8.73 -92.71 -0.81 15.76 16 46 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 47 H 0.05 1.98 4.13 -2.39 -0.01 1.97 16 48 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -85.27 406.19 0.03 -85.24 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.02 Total: 25.59 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 6.52 Total: 0.62 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -4.97 Total: -122.47 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -3.22 Total: -46.50 kcal Atomic # 14 Polarization: 55.80 SS G_CDS: 1.72 Total: 57.52 kcal Total: -85.27 0.03 -85.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717223096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.241 kcal (2) G-P(sol) polarization free energy of solvation -85.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds