Wall clock time and date at job start Tue Mar 31 2020 21:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00095 * 2 1 4 4 H 1.07997 * 120.00344 * 171.60953 * 3 2 1 5 5 C 1.38820 * 119.99804 * 351.61506 * 3 2 1 6 6 N 1.31612 * 119.99870 * 323.43340 * 5 3 2 7 7 Si 1.86803 * 119.99861 * 143.43171 * 5 3 2 8 8 H 1.48501 * 109.46864 * 179.97438 * 7 5 3 9 9 H 1.48500 * 109.47054 * 300.00076 * 7 5 3 10 10 H 1.48505 * 109.46949 * 60.00045 * 7 5 3 11 11 C 1.46497 * 119.99834 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47608 * 267.28584 * 11 2 1 13 13 H 1.08995 * 109.87537 * 53.80641 * 12 11 2 14 14 C 1.54326 * 109.88089 * 292.63526 * 12 11 2 15 15 C 1.55157 * 102.94240 * 218.39160 * 14 12 11 16 16 C 1.54913 * 101.58225 * 35.49791 * 15 14 12 17 17 N 1.47023 * 109.88432 * 174.82523 * 12 11 2 18 18 C 1.34772 * 125.64778 * 298.39587 * 17 12 11 19 19 O 1.21287 * 120.00053 * 4.46096 * 18 17 12 20 20 C 1.50699 * 120.00028 * 184.46781 * 18 17 12 21 21 H 1.08997 * 109.85709 * 304.29607 * 20 18 17 22 22 O 1.43352 * 109.86779 * 183.32154 * 20 18 17 23 23 C 1.44253 * 109.82592 * 240.57725 * 22 20 18 24 24 C 1.53993 * 104.54474 * 336.26796 * 23 22 20 25 25 H 1.09003 * 109.50242 * 281.43271 * 24 23 22 26 26 C 1.50956 * 112.60224 * 159.09917 * 24 23 22 27 27 O 1.42689 * 111.78717 * 293.71880 * 26 24 23 28 28 C 1.43262 * 112.51915 * 299.92249 * 27 26 24 29 29 C 1.52712 * 108.26685 * 65.60499 * 28 27 26 30 30 C 1.53112 * 110.62404 * 299.81272 * 29 28 27 31 31 H 1.09001 * 112.80534 * 283.33635 * 30 29 28 32 32 H 1.08991 * 109.47255 * 89.97048 * 1 2 3 33 33 H 1.09000 * 109.47322 * 209.97582 * 1 2 3 34 34 H 1.09001 * 109.46937 * 329.97159 * 1 2 3 35 35 H 0.97001 * 120.00287 * 0.02562 * 6 5 3 36 36 H 1.09000 * 109.47158 * 27.28805 * 11 2 1 37 37 H 1.09004 * 109.46815 * 147.27991 * 11 2 1 38 38 H 1.09001 * 110.71943 * 336.74735 * 14 12 11 39 39 H 1.08996 * 110.72401 * 100.02728 * 14 12 11 40 40 H 1.09009 * 111.00142 * 277.42578 * 15 14 12 41 41 H 1.08995 * 111.00882 * 153.57633 * 15 14 12 42 42 H 1.09001 * 110.36209 * 204.15453 * 16 15 14 43 43 H 1.08993 * 110.36743 * 81.83527 * 16 15 14 44 44 H 1.08995 * 110.35599 * 217.52831 * 23 22 20 45 45 H 1.09005 * 110.58486 * 95.11198 * 23 22 20 46 46 H 1.08997 * 109.02072 * 54.30964 * 26 24 23 47 47 H 1.08996 * 109.01616 * 173.20102 * 26 24 23 48 48 H 1.09003 * 109.70651 * 185.30409 * 28 27 26 49 49 H 1.09001 * 109.70277 * 305.87732 * 28 27 26 50 50 H 1.09003 * 109.25121 * 179.51221 * 29 28 27 51 51 H 1.09002 * 109.24287 * 60.10669 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2210 1.1909 0.1365 5 6 1.4667 2.3817 -0.1753 6 7 0.4402 2.4388 -0.9970 7 14 2.0047 3.9096 0.7550 8 1 1.1195 5.0460 0.3943 9 1 1.9161 3.6566 2.2156 10 1 3.4066 4.2409 0.3941 11 6 2.1975 -1.2687 0.0006 12 6 2.5117 -1.6757 1.4415 13 1 1.5951 -1.6883 2.0313 14 6 3.5226 -0.6858 2.0579 15 6 4.4376 -1.6073 2.9070 16 6 4.4900 -2.8849 2.0325 17 7 3.1367 -3.0063 1.4604 18 6 2.5672 -4.1479 1.0258 19 8 1.4761 -4.1181 0.4969 20 6 3.2859 -5.4613 1.1971 21 1 4.2725 -5.4062 0.7370 22 8 2.5249 -6.5155 0.5933 23 6 2.1647 -7.4925 1.5916 24 6 3.2217 -7.3223 2.6985 25 1 4.1464 -7.8147 2.3974 26 6 2.7629 -7.8703 4.0281 27 8 1.6675 -7.1255 4.5583 28 6 1.9943 -5.7474 4.7744 29 6 2.2595 -5.0999 3.4170 30 6 3.4259 -5.7930 2.7075 31 1 4.3968 -5.5054 3.1109 32 1 -0.3633 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 0.1606 1.6453 -1.4797 36 1 1.5882 -2.0402 -0.4702 37 1 3.1279 -1.1513 -0.5550 38 1 4.0965 -0.1852 1.2781 39 1 3.0136 0.0412 2.6907 40 1 3.9884 -1.8165 3.8779 41 1 5.4303 -1.1724 3.0232 42 1 4.7219 -3.7553 2.6462 43 1 5.2285 -2.7714 1.2390 44 1 2.2112 -8.4976 1.1726 45 1 1.1678 -7.2904 1.9835 46 1 2.4567 -8.9083 3.8979 47 1 3.5926 -7.8309 4.7339 48 1 1.1609 -5.2446 5.2650 49 1 2.8858 -5.6745 5.3973 50 1 2.5016 -4.0471 3.5622 51 1 1.3646 -5.1802 2.7997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717369393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:30 Heat of formation + Delta-G solvation = -83.997477 kcal Electronic energy + Delta-G solvation = -32262.341424 eV Core-core repulsion = 28163.048240 eV Total energy + Delta-G solvation = -4099.293184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.51581 -39.55531 -38.02570 -36.93760 -35.58794 -33.63438 -32.34891 -31.56684 -31.28039 -29.38466 -28.52954 -26.02172 -25.82382 -25.21820 -24.06075 -23.71903 -22.11715 -21.13988 -20.32859 -19.86004 -18.67331 -17.64143 -17.43941 -16.85378 -16.56659 -16.24034 -16.01235 -15.59823 -15.28327 -14.74440 -14.25624 -14.13191 -14.01787 -13.94971 -13.53085 -13.39250 -13.27570 -12.99248 -12.90552 -12.63260 -12.44988 -12.37256 -12.26594 -12.07733 -11.79437 -11.31320 -11.20351 -11.08904 -10.98858 -10.90851 -10.63807 -10.55919 -10.53939 -10.34603 -10.28608 -10.03041 -9.98162 -9.87403 -9.54358 -9.16078 -8.53120 -8.10036 -6.89881 -6.11797 -2.98488 2.70314 2.94714 3.50369 3.52229 3.55412 3.62099 3.73070 3.80991 4.19325 4.29569 4.54311 4.58277 4.62803 4.66259 4.70327 4.80030 4.93196 4.96788 5.02284 5.10957 5.13890 5.17067 5.21964 5.28478 5.29600 5.42086 5.43984 5.51597 5.58143 5.61479 5.64224 5.71295 5.75611 5.89923 5.97948 5.99644 6.26271 6.31610 6.50397 6.58526 6.62568 6.66351 6.74639 6.79833 6.90751 7.08833 7.20642 7.73436 7.98916 8.38172 8.60375 9.15083 9.95514 10.34581 11.23530 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.003146 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.994303 B = 8899.464645 C = 9292.274611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.602 5.602 3 C -0.365 4.365 4 H 0.067 0.933 5 C -0.022 4.022 6 N -0.908 5.908 7 Si 1.053 2.947 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.294 1.294 11 C 0.149 3.851 12 C 0.121 3.879 13 H 0.066 0.934 14 C -0.107 4.107 15 C -0.138 4.138 16 C 0.094 3.906 17 N -0.611 5.611 18 C 0.519 3.481 19 O -0.517 6.517 20 C 0.070 3.930 21 H 0.100 0.900 22 O -0.350 6.350 23 C 0.057 3.943 24 C -0.156 4.156 25 H 0.095 0.905 26 C 0.073 3.927 27 O -0.374 6.374 28 C 0.062 3.938 29 C -0.165 4.165 30 C -0.103 4.103 31 H 0.106 0.894 32 H 0.007 0.993 33 H 0.017 0.983 34 H 0.056 0.944 35 H 0.272 0.728 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.055 0.945 48 H 0.098 0.902 49 H 0.054 0.946 50 H 0.086 0.914 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -20.270 13.409 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.326 5.326 3 C -0.493 4.493 4 H 0.085 0.915 5 C -0.225 4.225 6 N -0.549 5.549 7 Si 0.883 3.117 8 H -0.213 1.213 9 H -0.223 1.223 10 H -0.221 1.221 11 C 0.020 3.980 12 C 0.016 3.984 13 H 0.084 0.916 14 C -0.145 4.145 15 C -0.176 4.176 16 C -0.029 4.029 17 N -0.348 5.348 18 C 0.306 3.694 19 O -0.392 6.392 20 C 0.008 3.992 21 H 0.118 0.882 22 O -0.267 6.267 23 C -0.019 4.019 24 C -0.175 4.175 25 H 0.114 0.886 26 C -0.004 4.004 27 O -0.292 6.292 28 C -0.015 4.015 29 C -0.202 4.202 30 C -0.121 4.121 31 H 0.125 0.875 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.116 0.884 49 H 0.073 0.927 50 H 0.105 0.895 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.668 -18.789 13.103 24.863 hybrid contribution 0.883 -1.402 -0.200 1.669 sum 10.552 -20.190 12.904 26.182 Atomic orbital electron populations 1.21036 0.83816 0.98609 0.97725 1.43904 1.00996 1.01268 1.86400 1.19915 0.93141 0.84681 1.51586 0.91473 1.25565 0.98462 0.99941 0.98488 1.70824 1.31737 1.31180 1.21167 0.83668 0.75236 0.76251 0.76511 1.21325 1.22264 1.22145 1.20949 0.96173 0.88509 0.92329 1.22551 0.95548 0.79225 1.01101 0.91585 1.22596 0.96289 0.96513 0.99111 1.22845 1.01001 0.95380 0.98343 1.22427 0.84871 0.98807 0.96826 1.48703 1.16362 1.07693 1.62072 1.20280 0.86403 0.84244 0.78486 1.90742 1.20726 1.86094 1.41664 1.22869 0.95210 0.87294 0.93793 0.88225 1.88669 1.73354 1.32789 1.31902 1.23376 0.98022 0.92788 0.87700 1.22735 1.00913 0.96056 0.97769 0.88638 1.21841 0.90310 0.96032 0.92234 1.88161 1.36477 1.21016 1.83576 1.22595 1.01345 0.82011 0.95514 1.22407 0.98939 1.00911 0.97950 1.22675 1.00420 0.94899 0.94144 0.87549 0.97532 0.96468 0.92554 0.91591 0.93029 0.94038 0.90015 0.89948 0.91196 0.90229 0.91216 0.91439 0.89206 0.91040 0.88463 0.92685 0.88414 0.92729 0.89544 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.42 8.90 59.85 0.53 3.95 16 2 N -0.60 -15.46 2.89 -181.12 -0.52 -15.98 16 3 C -0.37 -9.99 8.59 -15.06 -0.13 -10.12 16 4 H 0.07 1.80 6.63 -52.49 -0.35 1.45 16 5 C -0.02 -0.62 4.54 -17.43 -0.08 -0.70 16 6 N -0.91 -27.66 12.54 55.49 0.70 -26.96 16 7 Si 1.05 25.04 30.04 -169.99 -5.11 19.93 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.15 3.32 5.19 -4.05 -0.02 3.30 16 12 C 0.12 2.18 3.14 -66.95 -0.21 1.97 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 14 C -0.11 -1.71 5.46 -24.90 -0.14 -1.84 16 15 C -0.14 -1.50 7.09 -24.58 -0.17 -1.68 16 16 C 0.09 0.99 6.25 -2.53 -0.02 0.98 16 17 N -0.61 -9.02 2.22 -163.02 -0.36 -9.38 16 18 C 0.52 8.39 4.85 -10.99 -0.05 8.33 16 19 O -0.52 -10.93 15.13 -14.07 -0.21 -11.15 16 20 C 0.07 0.86 3.09 -26.68 -0.08 0.77 16 21 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 22 O -0.35 -4.97 10.61 -54.85 -0.58 -5.55 16 23 C 0.06 0.60 6.79 37.68 0.26 0.85 16 24 C -0.16 -1.19 3.02 -90.45 -0.27 -1.47 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 26 C 0.07 0.51 6.17 36.13 0.22 0.73 16 27 O -0.37 -3.68 10.58 -35.23 -0.37 -4.06 16 28 C 0.06 0.54 6.82 37.01 0.25 0.80 16 29 C -0.16 -1.73 3.94 -26.82 -0.11 -1.84 16 30 C -0.10 -0.91 2.59 -88.69 -0.23 -1.14 16 31 H 0.11 0.68 6.70 -51.93 -0.35 0.33 16 32 H 0.01 0.18 6.92 -51.93 -0.36 -0.18 16 33 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.06 1.52 6.66 -51.93 -0.35 1.18 16 35 H 0.27 8.40 5.99 -40.82 -0.24 8.16 16 36 H 0.05 1.24 6.47 -51.93 -0.34 0.90 16 37 H 0.04 0.94 7.94 -51.93 -0.41 0.53 16 38 H 0.08 1.44 6.36 -51.93 -0.33 1.11 16 39 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.54 5.32 -51.93 -0.28 0.27 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.30 8.13 -51.93 -0.42 -0.12 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 50 H 0.09 0.95 6.71 -51.93 -0.35 0.60 16 51 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -34.57 377.02 -9.38 -43.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.35 Total: 0.60 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.25 Total: 2.90 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.19 Total: -52.32 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.17 Total: -20.75 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.11 Total: 19.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.57 -9.38 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717369393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.048 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds