Wall clock time and date at job start Tue Mar 31 2020 21:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00095 * 2 1 4 4 H 1.07997 * 120.00344 * 171.60953 * 3 2 1 5 5 C 1.38820 * 119.99804 * 351.61506 * 3 2 1 6 6 N 1.31612 * 119.99870 * 323.43340 * 5 3 2 7 7 Si 1.86803 * 119.99861 * 143.43171 * 5 3 2 8 8 H 1.48501 * 109.46864 * 179.97438 * 7 5 3 9 9 H 1.48500 * 109.47054 * 300.00076 * 7 5 3 10 10 H 1.48505 * 109.46949 * 60.00045 * 7 5 3 11 11 C 1.46497 * 119.99834 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47608 * 267.28584 * 11 2 1 13 13 H 1.08995 * 109.87537 * 53.80641 * 12 11 2 14 14 C 1.54326 * 109.88089 * 292.63526 * 12 11 2 15 15 C 1.55157 * 102.94240 * 218.39160 * 14 12 11 16 16 C 1.54913 * 101.58225 * 35.49791 * 15 14 12 17 17 N 1.47023 * 109.88432 * 174.82523 * 12 11 2 18 18 C 1.34772 * 125.64778 * 298.39587 * 17 12 11 19 19 O 1.21287 * 120.00053 * 4.46096 * 18 17 12 20 20 C 1.50699 * 120.00028 * 184.46781 * 18 17 12 21 21 H 1.08997 * 109.85709 * 304.29607 * 20 18 17 22 22 O 1.43352 * 109.86779 * 183.32154 * 20 18 17 23 23 C 1.44253 * 109.82592 * 240.57725 * 22 20 18 24 24 C 1.53993 * 104.54474 * 336.26796 * 23 22 20 25 25 H 1.09003 * 109.50242 * 281.43271 * 24 23 22 26 26 C 1.50956 * 112.60224 * 159.09917 * 24 23 22 27 27 O 1.42689 * 111.78717 * 293.71880 * 26 24 23 28 28 C 1.43262 * 112.51915 * 299.92249 * 27 26 24 29 29 C 1.52712 * 108.26685 * 65.60499 * 28 27 26 30 30 C 1.53112 * 110.62404 * 299.81272 * 29 28 27 31 31 H 1.09001 * 112.80534 * 283.33635 * 30 29 28 32 32 H 1.08991 * 109.47255 * 89.97048 * 1 2 3 33 33 H 1.09000 * 109.47322 * 209.97582 * 1 2 3 34 34 H 1.09001 * 109.46937 * 329.97159 * 1 2 3 35 35 H 0.97001 * 120.00287 * 0.02562 * 6 5 3 36 36 H 1.09000 * 109.47158 * 27.28805 * 11 2 1 37 37 H 1.09004 * 109.46815 * 147.27991 * 11 2 1 38 38 H 1.09001 * 110.71943 * 336.74735 * 14 12 11 39 39 H 1.08996 * 110.72401 * 100.02728 * 14 12 11 40 40 H 1.09009 * 111.00142 * 277.42578 * 15 14 12 41 41 H 1.08995 * 111.00882 * 153.57633 * 15 14 12 42 42 H 1.09001 * 110.36209 * 204.15453 * 16 15 14 43 43 H 1.08993 * 110.36743 * 81.83527 * 16 15 14 44 44 H 1.08995 * 110.35599 * 217.52831 * 23 22 20 45 45 H 1.09005 * 110.58486 * 95.11198 * 23 22 20 46 46 H 1.08997 * 109.02072 * 54.30964 * 26 24 23 47 47 H 1.08996 * 109.01616 * 173.20102 * 26 24 23 48 48 H 1.09003 * 109.70651 * 185.30409 * 28 27 26 49 49 H 1.09001 * 109.70277 * 305.87732 * 28 27 26 50 50 H 1.09003 * 109.25121 * 179.51221 * 29 28 27 51 51 H 1.09002 * 109.24287 * 60.10669 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2210 1.1909 0.1365 5 6 1.4667 2.3817 -0.1753 6 7 0.4402 2.4388 -0.9970 7 14 2.0047 3.9096 0.7550 8 1 1.1195 5.0460 0.3943 9 1 1.9161 3.6566 2.2156 10 1 3.4066 4.2409 0.3941 11 6 2.1975 -1.2687 0.0006 12 6 2.5117 -1.6757 1.4415 13 1 1.5951 -1.6883 2.0313 14 6 3.5226 -0.6858 2.0579 15 6 4.4376 -1.6073 2.9070 16 6 4.4900 -2.8849 2.0325 17 7 3.1367 -3.0063 1.4604 18 6 2.5672 -4.1479 1.0258 19 8 1.4761 -4.1181 0.4969 20 6 3.2859 -5.4613 1.1971 21 1 4.2725 -5.4062 0.7370 22 8 2.5249 -6.5155 0.5933 23 6 2.1647 -7.4925 1.5916 24 6 3.2217 -7.3223 2.6985 25 1 4.1464 -7.8147 2.3974 26 6 2.7629 -7.8703 4.0281 27 8 1.6675 -7.1255 4.5583 28 6 1.9943 -5.7474 4.7744 29 6 2.2595 -5.0999 3.4170 30 6 3.4259 -5.7930 2.7075 31 1 4.3968 -5.5054 3.1109 32 1 -0.3633 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 0.1606 1.6453 -1.4797 36 1 1.5882 -2.0402 -0.4702 37 1 3.1279 -1.1513 -0.5550 38 1 4.0965 -0.1852 1.2781 39 1 3.0136 0.0412 2.6907 40 1 3.9884 -1.8165 3.8779 41 1 5.4303 -1.1724 3.0232 42 1 4.7219 -3.7553 2.6462 43 1 5.2285 -2.7714 1.2390 44 1 2.2112 -8.4976 1.1726 45 1 1.1678 -7.2904 1.9835 46 1 2.4567 -8.9083 3.8979 47 1 3.5926 -7.8309 4.7339 48 1 1.1609 -5.2446 5.2650 49 1 2.8858 -5.6745 5.3973 50 1 2.5016 -4.0471 3.5622 51 1 1.3646 -5.1802 2.7997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717369393.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:29 Heat of formation + Delta-G solvation = -107.372096 kcal Electronic energy + Delta-G solvation = -32263.355023 eV Core-core repulsion = 28163.048240 eV Total energy + Delta-G solvation = -4100.306784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.42502 -40.67124 -39.00280 -38.20515 -37.45979 -34.56295 -33.56886 -32.99298 -32.36437 -30.78360 -29.66252 -28.10893 -26.78090 -26.49562 -25.19803 -24.50399 -23.27142 -22.78902 -21.69402 -20.60103 -19.91835 -19.54810 -18.51808 -17.76953 -17.50007 -17.28492 -16.95326 -16.37083 -16.19193 -16.13131 -15.91620 -15.68904 -15.39581 -15.31491 -14.80641 -14.66107 -14.41298 -14.33074 -14.06341 -13.81714 -13.67518 -13.39094 -13.20186 -13.08599 -13.05962 -12.79808 -12.62529 -12.59980 -12.37276 -12.10171 -11.99575 -11.89883 -11.82269 -11.74001 -11.56368 -11.49558 -11.27949 -11.17725 -10.59518 -10.39981 -10.32813 -9.76590 -9.00388 -8.37177 -5.21411 1.51099 1.58649 1.67538 1.78709 1.85854 2.66076 2.76417 2.95839 3.09661 3.17437 3.32119 3.51261 3.54529 3.70257 3.74722 3.87955 3.95108 3.99114 4.02946 4.12922 4.21281 4.29634 4.31550 4.38865 4.44719 4.46831 4.49654 4.54100 4.63750 4.64563 4.66961 4.68162 4.73993 4.81555 4.85782 4.93965 4.97894 4.99283 5.07055 5.07973 5.10387 5.17011 5.21021 5.39847 5.44756 5.75691 5.83525 6.18615 6.33635 6.55108 6.95053 7.14744 7.79799 8.19465 8.97928 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.003146 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.994303 B = 8899.464645 C = 9292.274611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.616 5.616 3 C -0.359 4.359 4 H 0.075 0.925 5 C -0.080 4.080 6 N -0.943 5.943 7 Si 1.110 2.890 8 H -0.299 1.299 9 H -0.277 1.277 10 H -0.271 1.271 11 C 0.154 3.846 12 C 0.133 3.867 13 H 0.038 0.962 14 C -0.106 4.106 15 C -0.120 4.120 16 C 0.089 3.911 17 N -0.607 5.607 18 C 0.511 3.489 19 O -0.584 6.584 20 C 0.071 3.929 21 H 0.129 0.871 22 O -0.385 6.385 23 C 0.048 3.952 24 C -0.142 4.142 25 H 0.130 0.870 26 C 0.067 3.933 27 O -0.400 6.400 28 C 0.065 3.935 29 C -0.160 4.160 30 C -0.092 4.092 31 H 0.152 0.848 32 H -0.013 1.013 33 H 0.028 0.972 34 H 0.038 0.962 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.040 0.960 46 H 0.110 0.890 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.540 -21.807 16.635 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.341 5.341 3 C -0.488 4.488 4 H 0.093 0.907 5 C -0.276 4.276 6 N -0.586 5.586 7 Si 0.935 3.065 8 H -0.226 1.226 9 H -0.203 1.203 10 H -0.197 1.197 11 C 0.027 3.973 12 C 0.027 3.973 13 H 0.056 0.944 14 C -0.144 4.144 15 C -0.158 4.158 16 C -0.032 4.032 17 N -0.342 5.342 18 C 0.301 3.699 19 O -0.464 6.464 20 C 0.010 3.990 21 H 0.146 0.854 22 O -0.303 6.303 23 C -0.028 4.028 24 C -0.161 4.161 25 H 0.148 0.852 26 C -0.009 4.009 27 O -0.319 6.319 28 C -0.012 4.012 29 C -0.198 4.198 30 C -0.110 4.110 31 H 0.170 0.830 32 H 0.005 0.995 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.058 0.942 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.099 0.901 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.375 -20.379 16.366 29.829 hybrid contribution -0.621 -1.031 -1.296 1.769 sum 13.753 -21.409 15.069 29.574 Atomic orbital electron populations 1.20783 0.84281 0.98112 0.96418 1.44142 1.01031 1.02232 1.86683 1.20203 0.93641 0.85139 1.49772 0.90686 1.27059 0.98398 1.03513 0.98613 1.70971 1.33826 1.30362 1.23438 0.82919 0.75665 0.72124 0.75789 1.22598 1.20322 1.19651 1.20976 0.94724 0.86414 0.95181 1.22007 0.95982 0.82145 0.97203 0.94352 1.22451 0.96327 0.96404 0.99211 1.22847 1.01264 0.93731 0.97934 1.22802 0.82186 1.00554 0.97668 1.48716 1.17944 1.05909 1.61658 1.21280 0.85793 0.85888 0.76974 1.90706 1.23836 1.87140 1.44689 1.23062 0.94962 0.84347 0.96677 0.85353 1.88640 1.73872 1.33828 1.34002 1.23547 0.97801 0.92835 0.88592 1.22755 1.00980 0.95299 0.97023 0.85225 1.22100 0.90511 0.96152 0.92169 1.88142 1.38470 1.21461 1.83869 1.22611 1.02457 0.81536 0.94573 1.22304 0.97802 1.01166 0.98487 1.22831 1.01458 0.95654 0.91058 0.83032 0.99460 0.95374 0.94279 0.93588 0.95803 0.94631 0.91709 0.91471 0.89531 0.87131 0.86953 0.90153 0.87189 0.94152 0.87235 0.89678 0.89317 0.89426 0.90130 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.20 8.90 127.77 1.14 9.33 16 2 N -0.62 -33.19 2.89 -726.95 -2.10 -35.29 16 3 C -0.36 -20.07 8.59 84.04 0.72 -19.35 16 4 H 0.08 4.02 6.63 -2.91 -0.02 4.00 16 5 C -0.08 -4.61 4.54 84.86 0.39 -4.23 16 6 N -0.94 -59.66 12.54 21.65 0.27 -59.39 16 7 Si 1.11 50.78 30.04 68.60 2.06 52.84 16 8 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 9 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 C 0.15 7.24 5.19 86.38 0.45 7.68 16 12 C 0.13 4.90 3.14 45.34 0.14 5.05 16 13 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.11 -3.24 5.46 31.78 0.17 -3.07 16 15 C -0.12 -2.10 7.09 31.99 0.23 -1.88 16 16 C 0.09 1.50 6.25 86.86 0.54 2.04 16 17 N -0.61 -17.44 2.22 -788.07 -1.75 -19.19 16 18 C 0.51 16.79 4.85 87.66 0.43 17.21 16 19 O -0.58 -26.65 15.13 15.71 0.24 -26.42 16 20 C 0.07 1.59 3.09 30.62 0.09 1.69 16 21 H 0.13 2.16 8.12 -2.39 -0.02 2.14 16 22 O -0.39 -10.91 10.61 -130.22 -1.38 -12.29 16 23 C 0.05 0.96 6.79 72.32 0.49 1.45 16 24 C -0.14 -1.61 3.02 -10.69 -0.03 -1.65 16 25 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 26 C 0.07 0.66 6.17 71.32 0.44 1.10 16 27 O -0.40 -7.11 10.58 -148.98 -1.58 -8.69 16 28 C 0.06 0.99 6.82 71.89 0.49 1.48 16 29 C -0.16 -3.15 3.94 30.54 0.12 -3.03 16 30 C -0.09 -1.26 2.59 -9.54 -0.02 -1.28 16 31 H 0.15 0.78 6.70 -2.39 -0.02 0.77 16 32 H -0.01 -0.73 6.92 -2.39 -0.02 -0.74 16 33 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.04 2.23 6.66 -2.39 -0.02 2.22 16 35 H 0.25 16.57 5.99 -92.71 -0.55 16.01 16 36 H 0.02 1.23 6.47 -2.39 -0.02 1.21 16 37 H 0.04 1.67 7.94 -2.39 -0.02 1.65 16 38 H 0.06 2.21 6.36 -2.39 -0.02 2.19 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.11 1.00 5.32 -2.39 -0.01 0.98 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.03 7.49 -2.38 -0.02 1.02 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 0.40 8.13 -2.39 -0.02 0.38 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.09 0.79 8.11 -2.39 -0.02 0.77 16 50 H 0.08 1.64 6.71 -2.39 -0.02 1.62 16 51 H 0.03 0.99 6.37 -2.39 -0.02 0.98 16 Total: -1.00 -84.81 377.02 2.69 -82.13 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.13 Total: 13.73 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.78 Total: 12.57 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -3.57 Total: -113.87 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -2.72 Total: -47.39 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -84.81 2.69 -82.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717369393.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.246 kcal (2) G-P(sol) polarization free energy of solvation -84.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds