Wall clock time and date at job start Tue Mar 31 2020 22:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86801 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47347 * 269.99860 * 3 2 1 5 5 H 1.48500 * 109.46961 * 30.00213 * 3 2 1 6 6 H 1.48505 * 109.47203 * 149.99800 * 3 2 1 7 7 C 1.38951 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99930 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00433 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00582 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00334 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47246 * 179.97438 * 12 10 9 14 14 C 1.46958 * 111.00023 * 170.00350 * 13 12 10 15 15 C 1.53057 * 109.36486 * 183.19020 * 14 13 12 16 16 N 1.46955 * 109.36591 * 301.59887 * 15 14 13 17 17 C 1.46898 * 111.00069 * 183.18646 * 16 15 14 18 18 C 1.52997 * 109.47123 * 169.99872 * 17 16 15 19 19 N 1.46496 * 109.47194 * 180.02562 * 18 17 16 20 20 C 1.34777 * 120.00271 * 179.97438 * 19 18 17 21 21 O 1.21278 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00161 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46912 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49371 * 243.62054 * 23 22 20 25 25 C 1.53001 * 117.49608 * 175.00128 * 23 22 20 26 26 C 1.46958 * 110.87954 * 59.31970 * 16 15 14 27 27 C 1.46963 * 111.00513 * 293.80378 * 13 12 10 28 28 H 0.97001 * 120.00194 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99338 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.46603 * 60.00338 * 12 10 9 31 31 H 1.08993 * 109.47444 * 300.00512 * 12 10 9 32 32 H 1.08997 * 109.48699 * 63.22593 * 14 13 12 33 33 H 1.09002 * 109.50553 * 303.16704 * 14 13 12 34 34 H 1.09002 * 109.48698 * 181.62859 * 15 14 13 35 35 H 1.09000 * 109.48711 * 61.56637 * 15 14 13 36 36 H 1.09002 * 109.47032 * 50.00022 * 17 16 15 37 37 H 1.09001 * 109.47062 * 290.00146 * 17 16 15 38 38 H 1.09002 * 109.47045 * 60.00157 * 18 17 16 39 39 H 1.09001 * 109.47375 * 300.00082 * 18 17 16 40 40 H 0.97005 * 120.00266 * 0.02562 * 19 18 17 41 41 H 1.09002 * 109.47152 * 60.00245 * 22 20 19 42 42 H 1.09001 * 109.46980 * 300.00345 * 22 20 19 43 43 H 1.08995 * 115.55630 * 29.32739 * 23 22 20 44 44 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 45 45 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 46 46 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 47 47 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 48 48 H 1.08999 * 109.49204 * 60.64561 * 26 16 15 49 49 H 1.08997 * 109.48917 * 180.71382 * 26 16 15 50 50 H 1.08999 * 109.48437 * 296.78080 * 27 13 12 51 51 H 1.09004 * 109.48325 * 56.84560 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0050 14 6 1.5136 -7.2580 0.2326 15 6 2.5492 -8.3829 0.3025 16 7 3.3114 -8.4223 -0.9534 17 6 4.2660 -9.5388 -0.9550 18 6 4.8579 -9.7016 -2.3564 19 7 5.8094 -10.8155 -2.3582 20 6 6.4577 -11.1462 -3.4926 21 8 6.2537 -10.5213 -4.5118 22 6 7.4361 -12.2924 -3.4946 23 6 8.0282 -12.4551 -4.8960 24 6 7.7360 -13.7603 -5.6391 25 6 9.1349 -13.4955 -5.0789 26 6 3.9959 -7.1438 -1.1909 27 6 2.9604 -6.0189 -1.2609 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 -0.0016 30 1 0.6167 -4.9201 -0.8931 31 1 0.6173 -4.9213 0.8868 32 1 0.8175 -7.4547 -0.5828 33 1 0.9664 -7.2085 1.1740 34 1 2.0413 -9.3360 0.4498 35 1 3.2289 -8.2002 1.1348 36 1 3.7522 -10.4565 -0.6688 37 1 5.0663 -9.3336 -0.2441 38 1 5.3717 -8.7839 -2.6427 39 1 4.0575 -9.9068 -3.0674 40 1 5.9724 -11.3155 -1.5431 41 1 6.9217 -13.2097 -3.2084 42 1 8.2368 -12.0879 -2.7838 43 1 8.0928 -11.5422 -5.4880 44 1 7.1217 -14.5028 -5.1298 45 1 7.6083 -13.7061 -6.7202 46 1 9.9275 -13.2672 -5.7915 47 1 9.4416 -14.0638 -4.2008 48 1 4.6920 -6.9469 -0.3756 49 1 4.5428 -7.1935 -2.1324 50 1 2.2807 -6.2016 -2.0931 51 1 3.4683 -5.0657 -1.4080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731364334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:37 Heat of formation + Delta-G solvation = -60.947149 kcal Electronic energy + Delta-G solvation = -28584.632804 eV Core-core repulsion = 24518.631908 eV Total energy + Delta-G solvation = -4066.000896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.97206 -40.65685 -39.57442 -38.04800 -37.00561 -35.92877 -35.26350 -33.28304 -31.97495 -31.61930 -30.24684 -28.49109 -26.76516 -25.11344 -24.60057 -23.22851 -22.87862 -22.20227 -21.10009 -20.97627 -20.70929 -19.87317 -18.25165 -17.82924 -17.46767 -16.94026 -16.76140 -16.57176 -16.41213 -16.16814 -15.83686 -15.79591 -15.39756 -15.31483 -15.20082 -14.97852 -14.71922 -14.50667 -14.23582 -13.88726 -13.49992 -13.38838 -13.17379 -12.99094 -12.82318 -12.71848 -12.42516 -12.39457 -12.31874 -12.29741 -12.23361 -12.12247 -11.88210 -11.68923 -11.43911 -11.31414 -11.00756 -10.77149 -10.27263 -10.10783 -9.99817 -9.43534 -9.18915 -8.46349 -5.94874 1.37443 1.41061 1.53742 1.65571 2.05107 2.06166 2.28294 2.76492 2.90438 3.02958 3.20461 3.38548 3.74715 3.77699 3.82666 3.90096 4.03390 4.07396 4.14220 4.18494 4.23179 4.33445 4.37920 4.44433 4.48821 4.51609 4.56403 4.60388 4.63752 4.67344 4.77847 4.81407 4.83324 4.90574 4.93974 4.94627 5.05735 5.07410 5.10989 5.27690 5.32147 5.40992 5.43890 5.82946 5.91017 6.01357 6.13450 6.24124 6.56748 6.61257 7.13439 7.28492 7.57029 8.13068 8.71088 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.001629 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.876547 B =17179.322623 C =18210.450633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.615 6.615 12 C 0.059 3.941 13 N -0.535 5.535 14 C 0.054 3.946 15 C 0.065 3.935 16 N -0.543 5.543 17 C 0.055 3.945 18 C 0.126 3.874 19 N -0.717 5.717 20 C 0.508 3.492 21 O -0.591 6.591 22 C -0.098 4.098 23 C -0.164 4.164 24 C -0.184 4.184 25 C -0.165 4.165 26 C 0.069 3.931 27 C 0.059 3.941 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.419 0.581 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.031 0.969 49 H 0.080 0.920 50 H 0.032 0.968 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.819 -30.486 -1.605 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.501 6.501 12 C -0.072 4.072 13 N -0.260 5.260 14 C -0.074 4.074 15 C -0.063 4.063 16 N -0.269 5.269 17 C -0.073 4.073 18 C 0.001 3.999 19 N -0.370 5.370 20 C 0.296 3.704 21 O -0.471 6.471 22 C -0.138 4.138 23 C -0.183 4.183 24 C -0.221 4.221 25 C -0.202 4.202 26 C -0.059 4.059 27 C -0.069 4.069 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.256 0.744 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.133 0.867 48 H 0.050 0.950 49 H 0.098 0.902 50 H 0.050 0.950 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.321 -29.887 -2.297 31.391 hybrid contribution -0.209 1.350 0.020 1.366 sum 9.112 -28.537 -2.277 30.043 Atomic orbital electron populations 1.69668 1.06802 1.29248 1.50401 1.26011 0.96526 1.02320 0.96314 0.84942 0.77894 0.76993 0.78578 1.19767 1.19444 1.19844 1.19653 0.92666 0.84042 1.49906 0.90395 1.41925 1.09284 1.04675 1.65245 1.20788 0.88311 0.85945 0.82132 1.90458 1.15719 1.87770 1.56181 1.21712 0.93597 0.88556 1.03370 1.61738 1.25912 1.02920 1.35443 1.22332 0.95737 0.87318 1.02004 1.22192 0.95516 0.99203 0.89358 1.62070 1.26374 1.02757 1.35659 1.22178 0.94931 0.95330 0.94870 1.21120 0.91735 0.89149 0.97851 1.45795 1.43502 1.34669 1.13041 1.21312 0.81310 0.85356 0.82451 1.90707 1.66403 1.55538 1.34431 1.21245 0.98010 0.96993 0.97526 1.22019 1.04599 0.94430 0.97223 1.23132 0.99917 0.98688 1.00314 1.23083 0.91675 1.01493 1.03917 1.22025 0.94865 0.88311 1.00691 1.22142 0.96148 0.99020 0.89632 0.91324 0.77048 0.91878 0.86880 0.93762 0.88510 0.87052 0.94339 0.87428 0.93317 0.93593 0.92228 0.74386 0.85950 0.86003 0.89647 0.87375 0.89551 0.88702 0.86662 0.95039 0.90209 0.95010 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.93 5.29 -306.99 -1.62 -31.55 16 10 C 0.44 21.40 7.48 87.66 0.66 22.05 16 11 O -0.62 -34.46 13.92 -3.08 -0.04 -34.50 16 12 C 0.06 2.09 5.45 85.56 0.47 2.56 16 13 N -0.53 -17.71 4.44 -900.26 -4.00 -21.71 16 14 C 0.05 1.25 5.61 86.31 0.48 1.74 16 15 C 0.06 1.25 5.61 86.31 0.48 1.73 16 16 N -0.54 -11.63 4.71 -895.72 -4.22 -15.85 16 17 C 0.05 0.81 5.07 86.30 0.44 1.25 16 18 C 0.13 2.32 5.61 86.38 0.48 2.80 16 19 N -0.72 -9.53 5.56 -463.07 -2.57 -12.11 16 20 C 0.51 9.24 7.83 87.66 0.69 9.93 16 21 O -0.59 -17.42 15.56 -3.02 -0.05 -17.47 16 22 C -0.10 -0.96 5.98 29.85 0.18 -0.78 16 23 C -0.16 -2.33 5.41 -10.79 -0.06 -2.39 16 24 C -0.18 -2.13 10.18 30.60 0.31 -1.82 16 25 C -0.16 -1.55 10.25 30.60 0.31 -1.24 16 26 C 0.07 1.94 5.41 86.31 0.47 2.41 16 27 C 0.06 2.03 5.26 86.31 0.45 2.48 16 28 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 30 H 0.06 2.07 8.12 -2.38 -0.02 2.05 16 31 H 0.11 3.46 8.03 -2.39 -0.02 3.44 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.92 8.07 -2.39 -0.02 1.90 16 34 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.04 8.03 -2.39 -0.02 1.02 16 37 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 38 H 0.05 1.08 6.49 -2.39 -0.02 1.07 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.42 2.23 8.47 -92.70 -0.79 1.45 16 41 H 0.12 0.53 7.88 -2.39 -0.02 0.51 16 42 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 1.79 7.31 -2.39 -0.02 1.77 16 44 H 0.11 0.91 8.03 -2.39 -0.02 0.89 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.08 2.18 6.34 -2.39 -0.02 2.16 16 50 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.06 2.79 5.85 -2.39 -0.01 2.77 16 Total: -1.00 -77.58 409.17 -4.13 -81.71 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.58 Total: 33.60 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.64 Total: 22.17 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -12.13 Total: -131.08 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.09 Total: -51.97 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -77.58 -4.13 -81.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731364334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.760 kcal (2) G-P(sol) polarization free energy of solvation -77.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds