Wall clock time and date at job start Tue Mar 31 2020 21:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99598 * 2 1 4 4 C 1.53006 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47389 * 175.29394 * 4 3 2 6 6 C 1.50694 * 112.84903 * 297.42242 * 5 4 3 7 7 O 1.21278 * 120.00167 * 114.71761 * 6 5 4 8 8 N 1.34781 * 120.00159 * 294.70763 * 6 5 4 9 9 C 1.46490 * 120.00303 * 184.99376 * 8 6 5 10 10 H 1.09004 * 110.45447 * 32.40591 * 9 8 6 11 11 C 1.54546 * 110.51308 * 269.65682 * 9 8 6 12 12 O 1.44630 * 105.03500 * 217.72147 * 11 9 8 13 13 C 1.43243 * 105.22601 * 39.02506 * 12 11 9 14 14 C 1.52885 * 115.84002 * 90.92978 * 13 12 11 15 15 N 1.47779 * 85.78274 * 94.51455 * 14 13 12 16 16 C 1.36940 * 134.40156 * 203.87030 * 15 14 13 17 17 H 1.07997 * 120.00090 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99773 * 0.02562 * 16 15 14 19 19 N 1.31621 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99865 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47417 * 120.00212 * 20 18 16 23 23 H 1.48504 * 109.47198 * 239.99915 * 20 18 16 24 24 C 1.47786 * 91.19539 * 23.87145 * 15 14 13 25 25 C 1.53470 * 106.26106 * 321.06603 * 13 12 11 26 26 C 1.53783 * 113.61164 * 68.61659 * 5 4 3 27 27 C 1.53950 * 87.02097 * 89.23007 * 26 5 4 28 28 C 1.53778 * 87.11211 * 25.36136 * 27 26 5 29 29 H 1.09004 * 109.47100 * 60.00543 * 1 2 3 30 30 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47617 * 300.00034 * 1 2 3 32 32 H 1.08999 * 109.47746 * 59.99978 * 3 2 1 33 33 H 1.08995 * 109.47356 * 299.99450 * 3 2 1 34 34 H 1.09004 * 109.46945 * 55.29173 * 4 3 2 35 35 H 1.09003 * 109.46809 * 295.29922 * 4 3 2 36 36 H 0.97006 * 119.99572 * 5.00082 * 8 6 5 37 37 H 1.08997 * 110.32947 * 336.61262 * 11 9 8 38 38 H 1.09005 * 110.32545 * 98.82953 * 11 9 8 39 39 H 1.09004 * 113.82067 * 208.72934 * 14 13 12 40 40 H 1.09001 * 113.82274 * 340.29535 * 14 13 12 41 41 H 0.96997 * 119.99884 * 180.02562 * 19 18 16 42 42 H 1.09002 * 113.81749 * 221.90827 * 24 15 14 43 43 H 1.08999 * 113.93188 * 90.36340 * 24 15 14 44 44 H 1.08997 * 110.57647 * 264.15334 * 25 13 12 45 45 H 1.08993 * 110.57476 * 141.26639 * 25 13 12 46 46 H 1.08999 * 113.61263 * 203.74438 * 26 5 4 47 47 H 1.09002 * 113.61748 * 334.64897 * 26 5 4 48 48 H 1.09000 * 113.53772 * 270.80939 * 27 26 5 49 49 H 1.08998 * 113.74759 * 139.93937 * 27 26 5 50 50 H 1.09003 * 113.61956 * 220.09280 * 28 27 26 51 51 H 1.09000 * 113.61924 * 89.18731 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5776 -0.1177 6 6 3.8034 3.2687 -1.4092 7 8 3.1271 4.2753 -1.3929 8 7 4.2386 2.7683 -2.5826 9 6 3.9882 3.4978 -3.8280 10 1 3.9901 4.5727 -3.6468 11 6 2.6475 3.0538 -4.4556 12 8 2.8864 3.0426 -5.8820 13 6 4.2132 2.5255 -6.0371 14 6 4.3221 1.0099 -6.2063 15 7 4.3197 1.2815 -7.6589 16 6 3.9870 0.5526 -8.7694 17 1 4.0757 0.9934 -9.7513 18 6 3.5346 -0.7526 -8.6329 19 7 3.4259 -1.2898 -7.4362 20 14 3.0801 -1.7468 -10.1477 21 1 3.2892 -0.9201 -11.3635 22 1 3.9353 -2.9587 -10.2194 23 1 1.6538 -2.1518 -10.0644 24 6 4.8197 2.6540 -7.4345 25 6 5.0448 3.1263 -4.8957 26 6 3.9463 3.4543 1.1280 27 6 5.2581 2.8586 1.6707 28 6 5.6600 2.6109 0.2072 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8518 0.5726 -0.8440 35 1 3.8625 0.7185 0.9300 36 1 4.7175 1.9249 -2.6024 37 1 2.3791 2.0560 -4.1087 38 1 1.8599 3.7659 -4.2090 39 1 5.2591 0.5921 -5.8381 40 1 3.4449 0.4640 -5.8590 41 1 3.1102 -2.2019 -7.3409 42 1 4.3354 3.4062 -8.0572 43 1 5.9067 2.7345 -7.4371 44 1 5.5754 4.0157 -5.2354 45 1 5.7442 2.3888 -4.5021 46 1 4.0038 4.5235 0.9243 47 1 3.0671 3.1801 1.7111 48 1 5.1157 1.9434 2.2453 49 1 5.8917 3.5843 2.1806 50 1 6.1624 1.6567 0.0478 51 1 6.1869 3.4491 -0.2489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733797244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:50 Heat of formation + Delta-G solvation = -46.401450 kcal Electronic energy + Delta-G solvation = -30955.438899 eV Core-core repulsion = 26857.776001 eV Total energy + Delta-G solvation = -4097.662898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.05829 -39.86413 -38.13554 -37.64572 -36.07323 -34.41776 -32.08110 -31.85967 -30.35890 -28.20422 -27.06136 -26.10296 -25.85061 -25.47356 -24.91360 -23.02137 -22.31167 -21.48423 -20.71979 -19.03905 -18.88989 -17.40171 -16.76276 -16.67251 -16.47638 -16.12923 -15.51739 -15.24933 -15.13538 -15.01059 -14.90360 -14.70329 -14.43875 -13.82895 -13.56697 -13.26745 -13.00900 -12.85177 -12.75756 -12.67543 -12.61417 -12.12814 -11.83226 -11.67576 -11.64599 -11.57957 -11.37939 -11.34127 -11.14893 -11.09648 -10.84202 -10.79676 -10.55861 -10.40646 -10.26376 -9.82806 -9.78499 -9.62637 -9.50682 -9.09406 -8.87057 -8.79305 -6.86772 -5.74071 -3.05686 2.51730 3.05292 3.41160 3.44774 3.46375 3.49005 4.08614 4.24407 4.29914 4.45166 4.47921 4.51745 4.62846 4.77327 4.87332 4.97552 4.99869 5.11917 5.16076 5.19423 5.24350 5.25938 5.29984 5.39694 5.41978 5.44609 5.46655 5.53833 5.55345 5.59143 5.62053 5.73377 5.78807 5.85758 5.88454 6.01659 6.04303 6.08909 6.09355 6.35515 6.40900 6.52878 6.59401 6.95473 6.96182 7.19754 7.44451 7.49607 7.66856 8.00069 8.14354 9.06723 9.73218 10.59727 11.43408 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.003040 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.477530 B = 9207.353755 C =10388.666060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.061 3.939 4 C -0.091 4.091 5 C -0.105 4.105 6 C 0.529 3.471 7 O -0.540 6.540 8 N -0.714 5.714 9 C 0.114 3.886 10 H 0.099 0.901 11 C 0.039 3.961 12 O -0.335 6.335 13 C 0.055 3.945 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.219 4.219 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.129 3.871 25 C -0.146 4.146 26 C -0.113 4.113 27 C -0.141 4.141 28 C -0.122 4.122 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.252 0.748 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 7.810 20.666 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.016 4.016 4 C -0.129 4.129 5 C -0.108 4.108 6 C 0.315 3.685 7 O -0.417 6.417 8 N -0.366 5.366 9 C 0.009 3.991 10 H 0.117 0.883 11 C -0.040 4.040 12 O -0.253 6.253 13 C 0.014 3.986 14 C 0.028 3.972 15 N -0.331 5.331 16 C -0.346 4.346 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.003 3.997 25 C -0.186 4.186 26 C -0.151 4.151 27 C -0.178 4.178 28 C -0.160 4.160 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.214 8.170 20.278 21.974 hybrid contribution -0.117 -0.925 -0.726 1.182 sum 2.097 7.244 19.552 20.956 Atomic orbital electron populations 1.22747 0.80765 1.02867 1.00060 1.87850 1.19942 1.27664 1.95457 1.22493 0.93573 0.84842 1.00686 1.21246 0.93528 0.93675 1.04462 1.22111 0.98666 0.96563 0.93478 1.20382 0.78781 0.84527 0.84825 1.90690 1.37716 1.25880 1.87403 1.46104 1.58783 1.25724 1.06003 1.22429 0.95675 0.97575 0.83445 0.88324 1.23769 0.96680 1.01221 0.82298 1.89031 1.31365 1.84021 1.20858 1.23766 0.82548 0.97409 0.94878 1.22585 0.99890 0.89823 0.84942 1.45836 1.75001 1.09806 1.02432 1.19052 1.36590 0.93971 0.85036 0.90137 1.24762 1.01915 0.96904 0.96878 1.69816 1.52289 1.14441 1.20371 0.86043 0.77836 0.80006 0.81860 1.20463 1.21787 1.21715 1.22512 0.96106 0.89761 0.91328 1.23034 0.97945 1.02021 0.95565 1.22899 0.98167 0.99905 0.94124 1.22872 0.97454 1.01435 0.96063 1.22935 0.93065 1.03118 0.96837 0.93802 0.89478 0.94227 0.93056 0.93124 0.89902 0.89692 0.76108 0.91987 0.89309 0.94866 0.90470 0.93766 0.92912 0.93473 0.89828 0.89775 0.88944 0.90864 0.89738 0.90946 0.90199 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.74 10.70 -35.23 -0.38 -5.12 16 3 C 0.06 0.65 5.65 37.16 0.21 0.86 16 4 C -0.09 -0.83 4.94 -26.73 -0.13 -0.96 16 5 C -0.10 -0.95 0.79 -154.85 -0.12 -1.07 16 6 C 0.53 6.39 5.75 -10.99 -0.06 6.33 16 7 O -0.54 -8.34 15.84 5.56 0.09 -8.25 16 8 N -0.71 -8.34 5.08 -52.14 -0.26 -8.60 16 9 C 0.11 1.56 3.45 -66.21 -0.23 1.33 16 10 H 0.10 1.38 7.63 -51.93 -0.40 0.98 16 11 C 0.04 0.64 7.37 37.97 0.28 0.92 16 12 O -0.34 -6.86 11.44 -35.23 -0.40 -7.26 16 13 C 0.06 1.06 1.28 -90.66 -0.12 0.94 16 14 C 0.15 3.58 6.99 -3.40 -0.02 3.56 16 15 N -0.60 -15.87 3.71 -183.62 -0.68 -16.55 16 16 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.63 11.40 55.49 0.63 -26.99 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C 0.13 2.69 8.47 -3.40 -0.03 2.66 16 25 C -0.15 -2.05 6.25 -25.57 -0.16 -2.21 16 26 C -0.11 -0.95 6.76 -25.83 -0.17 -1.12 16 27 C -0.14 -0.91 7.74 -25.83 -0.20 -1.11 16 28 C -0.12 -0.87 7.22 -25.92 -0.19 -1.06 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.49 7.08 -51.93 -0.37 0.13 16 33 H 0.05 0.63 7.33 -51.93 -0.38 0.25 16 34 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.08 0.66 7.31 -51.93 -0.38 0.29 16 36 H 0.40 4.11 8.31 -40.82 -0.34 3.77 16 37 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 40 H 0.08 2.05 7.20 -51.93 -0.37 1.68 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 45 H 0.08 1.06 7.39 -51.93 -0.38 0.68 16 46 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 47 H 0.07 0.58 7.01 -51.93 -0.36 0.22 16 48 H 0.08 0.48 7.60 -51.93 -0.39 0.08 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 51 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -34.56 405.01 -8.81 -43.37 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.80 Total: 2.08 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.09 Total: 3.69 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.31 Total: -52.14 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.69 Total: -20.63 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.56 -8.81 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733797244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds