Wall clock time and date at job start Tue Mar 31 2020 21:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99598 * 2 1 4 4 C 1.53006 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47389 * 175.29394 * 4 3 2 6 6 C 1.50694 * 112.84903 * 297.42242 * 5 4 3 7 7 O 1.21278 * 120.00167 * 114.71761 * 6 5 4 8 8 N 1.34781 * 120.00159 * 294.70763 * 6 5 4 9 9 C 1.46490 * 120.00303 * 184.99376 * 8 6 5 10 10 H 1.09004 * 110.45447 * 32.40591 * 9 8 6 11 11 C 1.54546 * 110.51308 * 269.65682 * 9 8 6 12 12 O 1.44630 * 105.03500 * 217.72147 * 11 9 8 13 13 C 1.43243 * 105.22601 * 39.02506 * 12 11 9 14 14 C 1.52885 * 115.84002 * 90.92978 * 13 12 11 15 15 N 1.47779 * 85.78274 * 94.51455 * 14 13 12 16 16 C 1.36940 * 134.40156 * 203.87030 * 15 14 13 17 17 H 1.07997 * 120.00090 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99773 * 0.02562 * 16 15 14 19 19 N 1.31621 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99865 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47417 * 120.00212 * 20 18 16 23 23 H 1.48504 * 109.47198 * 239.99915 * 20 18 16 24 24 C 1.47786 * 91.19539 * 23.87145 * 15 14 13 25 25 C 1.53470 * 106.26106 * 321.06603 * 13 12 11 26 26 C 1.53783 * 113.61164 * 68.61659 * 5 4 3 27 27 C 1.53950 * 87.02097 * 89.23007 * 26 5 4 28 28 C 1.53778 * 87.11211 * 25.36136 * 27 26 5 29 29 H 1.09004 * 109.47100 * 60.00543 * 1 2 3 30 30 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47617 * 300.00034 * 1 2 3 32 32 H 1.08999 * 109.47746 * 59.99978 * 3 2 1 33 33 H 1.08995 * 109.47356 * 299.99450 * 3 2 1 34 34 H 1.09004 * 109.46945 * 55.29173 * 4 3 2 35 35 H 1.09003 * 109.46809 * 295.29922 * 4 3 2 36 36 H 0.97006 * 119.99572 * 5.00082 * 8 6 5 37 37 H 1.08997 * 110.32947 * 336.61262 * 11 9 8 38 38 H 1.09005 * 110.32545 * 98.82953 * 11 9 8 39 39 H 1.09004 * 113.82067 * 208.72934 * 14 13 12 40 40 H 1.09001 * 113.82274 * 340.29535 * 14 13 12 41 41 H 0.96997 * 119.99884 * 180.02562 * 19 18 16 42 42 H 1.09002 * 113.81749 * 221.90827 * 24 15 14 43 43 H 1.08999 * 113.93188 * 90.36340 * 24 15 14 44 44 H 1.08997 * 110.57647 * 264.15334 * 25 13 12 45 45 H 1.08993 * 110.57476 * 141.26639 * 25 13 12 46 46 H 1.08999 * 113.61263 * 203.74438 * 26 5 4 47 47 H 1.09002 * 113.61748 * 334.64897 * 26 5 4 48 48 H 1.09000 * 113.53772 * 270.80939 * 27 26 5 49 49 H 1.08998 * 113.74759 * 139.93937 * 27 26 5 50 50 H 1.09003 * 113.61956 * 220.09280 * 28 27 26 51 51 H 1.09000 * 113.61924 * 89.18731 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5776 -0.1177 6 6 3.8034 3.2687 -1.4092 7 8 3.1271 4.2753 -1.3929 8 7 4.2386 2.7683 -2.5826 9 6 3.9882 3.4978 -3.8280 10 1 3.9901 4.5727 -3.6468 11 6 2.6475 3.0538 -4.4556 12 8 2.8864 3.0426 -5.8820 13 6 4.2132 2.5255 -6.0371 14 6 4.3221 1.0099 -6.2063 15 7 4.3197 1.2815 -7.6589 16 6 3.9870 0.5526 -8.7694 17 1 4.0757 0.9934 -9.7513 18 6 3.5346 -0.7526 -8.6329 19 7 3.4259 -1.2898 -7.4362 20 14 3.0801 -1.7468 -10.1477 21 1 3.2892 -0.9201 -11.3635 22 1 3.9353 -2.9587 -10.2194 23 1 1.6538 -2.1518 -10.0644 24 6 4.8197 2.6540 -7.4345 25 6 5.0448 3.1263 -4.8957 26 6 3.9463 3.4543 1.1280 27 6 5.2581 2.8586 1.6707 28 6 5.6600 2.6109 0.2072 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8518 0.5726 -0.8440 35 1 3.8625 0.7185 0.9300 36 1 4.7175 1.9249 -2.6024 37 1 2.3791 2.0560 -4.1087 38 1 1.8599 3.7659 -4.2090 39 1 5.2591 0.5921 -5.8381 40 1 3.4449 0.4640 -5.8590 41 1 3.1102 -2.2019 -7.3409 42 1 4.3354 3.4062 -8.0572 43 1 5.9067 2.7345 -7.4371 44 1 5.5754 4.0157 -5.2354 45 1 5.7442 2.3888 -4.5021 46 1 4.0038 4.5235 0.9243 47 1 3.0671 3.1801 1.7111 48 1 5.1157 1.9434 2.2453 49 1 5.8917 3.5843 2.1806 50 1 6.1624 1.6567 0.0478 51 1 6.1869 3.4491 -0.2489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733797244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:49 Heat of formation + Delta-G solvation = -71.054201 kcal Electronic energy + Delta-G solvation = -30956.507922 eV Core-core repulsion = 26857.776001 eV Total energy + Delta-G solvation = -4098.731921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.00111 -41.22404 -39.11381 -38.50907 -37.65726 -35.64348 -34.14604 -32.64827 -31.59914 -29.87862 -27.92233 -27.55083 -26.77265 -26.64506 -26.22921 -24.10180 -23.71964 -22.63124 -21.78646 -20.64790 -19.70891 -18.75553 -18.19848 -17.63399 -17.47507 -17.05992 -16.97823 -16.68401 -16.47113 -16.18690 -15.96868 -15.76576 -15.66318 -15.28526 -14.79214 -14.64119 -14.33264 -14.26056 -13.78621 -13.62613 -13.38924 -13.25054 -13.17989 -13.03395 -12.94789 -12.76395 -12.66376 -12.56472 -12.36467 -12.22656 -12.17487 -12.05264 -11.78004 -11.66112 -11.39610 -11.33104 -11.17945 -10.94202 -10.68989 -10.57151 -10.55266 -10.10895 -8.92939 -7.91082 -5.23486 1.43379 1.45168 1.55094 1.56074 2.08411 2.46020 2.66555 2.87972 3.27115 3.38466 3.39964 3.50286 3.59856 3.67256 3.76031 3.81505 3.91773 3.94879 4.06330 4.10165 4.18876 4.24537 4.38141 4.45475 4.49045 4.58052 4.62728 4.65879 4.72516 4.78104 4.79724 4.82243 4.84664 4.88468 4.90065 4.94290 4.94965 5.03455 5.11617 5.14962 5.17381 5.23163 5.25786 5.45813 5.49556 5.53269 5.91763 6.09445 6.13144 6.49960 6.91267 7.18722 7.59625 8.53734 9.25927 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.003040 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.477530 B = 9207.353755 C =10388.666060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.060 3.940 4 C -0.087 4.087 5 C -0.104 4.104 6 C 0.528 3.472 7 O -0.576 6.576 8 N -0.708 5.708 9 C 0.127 3.873 10 H 0.103 0.897 11 C 0.037 3.963 12 O -0.367 6.367 13 C 0.071 3.929 14 C 0.152 3.848 15 N -0.641 5.641 16 C -0.233 4.233 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.295 1.295 24 C 0.128 3.872 25 C -0.130 4.130 26 C -0.118 4.118 27 C -0.129 4.129 28 C -0.116 4.116 29 H 0.034 0.966 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.413 0.587 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.247 0.753 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 8.341 21.925 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.017 4.017 4 C -0.124 4.124 5 C -0.107 4.107 6 C 0.316 3.684 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.022 3.978 10 H 0.121 0.879 11 C -0.041 4.041 12 O -0.285 6.285 13 C 0.030 3.970 14 C 0.027 3.973 15 N -0.367 5.367 16 C -0.361 4.361 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.222 1.222 24 C 0.003 3.997 25 C -0.169 4.169 26 C -0.156 4.156 27 C -0.166 4.166 28 C -0.154 4.154 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.250 0.750 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.117 0.883 49 H 0.101 0.899 50 H 0.114 0.886 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.050 8.721 21.546 23.594 hybrid contribution -0.766 -1.038 -1.115 1.705 sum 3.284 7.683 20.431 22.074 Atomic orbital electron populations 1.22904 0.79830 1.03836 1.00489 1.87817 1.21171 1.28422 1.95520 1.22550 0.94806 0.84307 1.00010 1.21248 0.92195 0.93670 1.05299 1.22168 1.00471 0.96248 0.91792 1.20972 0.77733 0.84045 0.85680 1.90672 1.39265 1.27651 1.87938 1.46050 1.58630 1.25923 1.05379 1.22186 0.93711 0.97877 0.84056 0.87855 1.23874 0.98799 1.00637 0.80832 1.88994 1.32463 1.83840 1.23251 1.23445 0.83067 0.94399 0.96109 1.22530 0.98250 0.92623 0.83905 1.46247 1.75767 1.11901 1.02817 1.19436 1.35970 0.94518 0.86221 0.90035 1.25606 1.02614 0.98124 0.99739 1.70005 1.53561 1.14331 1.22260 0.85015 0.76922 0.78434 0.78997 1.19006 1.21502 1.22192 1.22761 0.97785 0.87017 0.92097 1.22961 0.97379 1.03313 0.93233 1.22919 0.99663 0.99012 0.94005 1.22857 0.95912 1.02039 0.95772 1.22964 0.91308 1.03950 0.97144 0.94685 0.88332 0.92487 0.91933 0.95590 0.90395 0.87650 0.75037 0.93501 0.88934 0.94201 0.94731 0.94372 0.93046 0.90159 0.87003 0.87724 0.90431 0.90646 0.88347 0.89928 0.88642 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -9.86 10.70 -148.98 -1.59 -11.45 16 3 C 0.06 1.27 5.65 71.98 0.41 1.67 16 4 C -0.09 -1.45 4.94 30.60 0.15 -1.30 16 5 C -0.10 -1.70 0.79 -52.40 -0.04 -1.74 16 6 C 0.53 12.31 5.75 87.65 0.50 12.81 16 7 O -0.58 -17.67 15.84 -3.02 -0.05 -17.72 16 8 N -0.71 -15.64 5.08 -437.25 -2.22 -17.87 16 9 C 0.13 3.32 3.45 46.11 0.16 3.48 16 10 H 0.10 2.69 7.63 -2.38 -0.02 2.67 16 11 C 0.04 1.22 7.37 72.51 0.53 1.76 16 12 O -0.37 -15.19 11.44 -148.98 -1.70 -16.89 16 13 C 0.07 2.66 1.28 -10.66 -0.01 2.64 16 14 C 0.15 7.24 6.99 86.09 0.60 7.84 16 15 N -0.64 -33.91 3.71 -741.13 -2.75 -36.66 16 16 C -0.23 -13.58 10.70 84.03 0.90 -12.68 16 17 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 19 N -0.95 -58.75 11.40 21.65 0.25 -58.51 16 20 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 24 C 0.13 5.18 8.47 86.09 0.73 5.91 16 25 C -0.13 -3.31 6.25 31.35 0.20 -3.11 16 26 C -0.12 -1.79 6.76 31.18 0.21 -1.58 16 27 C -0.13 -1.27 7.74 31.18 0.24 -1.03 16 28 C -0.12 -1.33 7.22 31.12 0.22 -1.10 16 29 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.16 7.08 -2.39 -0.02 1.14 16 33 H 0.03 0.67 7.33 -2.39 -0.02 0.65 16 34 H 0.08 1.39 8.07 -2.38 -0.02 1.37 16 35 H 0.11 1.36 7.31 -2.39 -0.02 1.34 16 36 H 0.41 7.73 8.31 -92.70 -0.77 6.96 16 37 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 38 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 39 H 0.04 1.82 7.96 -2.38 -0.02 1.80 16 40 H 0.03 1.92 7.20 -2.39 -0.02 1.90 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.11 2.33 8.12 -2.39 -0.02 2.31 16 45 H 0.10 2.28 7.39 -2.39 -0.02 2.26 16 46 H 0.08 1.43 7.71 -2.39 -0.02 1.41 16 47 H 0.07 1.09 7.01 -2.39 -0.02 1.07 16 48 H 0.10 0.74 7.60 -2.39 -0.02 0.72 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 51 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 Total: -1.00 -77.39 405.01 0.63 -76.76 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.15 Total: 21.44 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.52 Total: 11.78 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -4.72 Total: -113.03 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -3.35 Total: -46.06 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -77.39 0.63 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733797244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.707 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds