Wall clock time and date at job start Tue Mar 31 2020 21:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99801 * 2 1 4 4 O 1.21274 * 120.00193 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99882 * 0.02562 * 3 2 1 6 6 H 1.09002 * 109.85836 * 304.02138 * 5 3 2 7 7 O 1.43354 * 109.86576 * 182.90617 * 5 3 2 8 8 C 1.43990 * 109.97821 * 240.52990 * 7 5 3 9 9 C 1.53990 * 104.53217 * 336.37420 * 8 7 5 10 10 H 1.08998 * 109.51105 * 281.36832 * 9 8 7 11 11 C 1.50956 * 112.60769 * 159.02577 * 9 8 7 12 12 O 1.42682 * 111.78862 * 293.72219 * 11 9 8 13 13 C 1.43255 * 112.53220 * 299.93472 * 12 11 9 14 14 C 1.52719 * 108.26601 * 65.59854 * 13 12 11 15 15 C 1.53119 * 110.61206 * 299.80571 * 14 13 12 16 16 H 1.09003 * 112.28330 * 283.03030 * 15 14 13 17 17 C 1.46500 * 120.00246 * 180.02562 * 2 1 3 18 18 H 1.09000 * 109.47175 * 179.97438 * 17 2 1 19 19 C 1.53006 * 109.46998 * 59.99780 * 17 2 1 20 20 N 1.46497 * 109.47007 * 55.00265 * 19 17 2 21 21 C 1.36945 * 119.99639 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00064 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99933 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99765 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 119.99930 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47242 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47110 * 120.00647 * 25 23 21 28 28 H 1.48506 * 109.47390 * 240.00169 * 25 23 21 29 29 C 1.52997 * 109.47204 * 299.99754 * 17 2 1 30 30 C 1.52998 * 117.49730 * 248.62661 * 29 17 2 31 31 C 1.52996 * 117.49991 * 179.97438 * 29 17 2 32 32 H 1.08999 * 109.47264 * 269.99330 * 1 2 3 33 33 H 1.09000 * 109.47703 * 29.99711 * 1 2 3 34 34 H 1.09007 * 109.46950 * 150.00077 * 1 2 3 35 35 H 1.09000 * 110.41791 * 217.61316 * 8 7 5 36 36 H 1.09002 * 110.52357 * 95.19054 * 8 7 5 37 37 H 1.08997 * 109.01735 * 173.12863 * 11 9 8 38 38 H 1.09003 * 108.95545 * 54.27400 * 11 9 8 39 39 H 1.09003 * 109.70308 * 305.90829 * 13 12 11 40 40 H 1.09002 * 109.74350 * 185.31661 * 13 12 11 41 41 H 1.08998 * 109.24677 * 179.51346 * 14 13 12 42 42 H 1.08993 * 109.24440 * 60.09583 * 14 13 12 43 43 H 1.09007 * 109.46744 * 174.99835 * 19 17 2 44 44 H 1.08995 * 109.46794 * 295.00080 * 19 17 2 45 45 H 0.96993 * 120.00553 * 359.97438 * 20 19 17 46 46 H 0.97004 * 119.99763 * 179.97438 * 24 23 21 47 47 H 1.09006 * 115.54706 * 34.32807 * 29 17 2 48 48 H 1.09000 * 117.50164 * 359.97438 * 30 29 17 49 49 H 1.08996 * 117.49757 * 145.02406 * 30 29 17 50 50 H 1.09004 * 117.50186 * 214.97534 * 31 29 17 51 51 H 1.08997 * 117.50002 * 0.02562 * 31 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.7030 2.5063 -0.8489 7 8 2.3077 3.5675 -0.0679 8 6 2.1677 4.4022 1.0970 9 6 0.7363 4.1318 1.5963 10 1 0.0261 4.6870 0.9837 11 6 0.5498 4.4971 3.0491 12 8 1.3188 3.6576 3.9092 13 6 0.9654 2.2748 3.7862 14 6 1.3407 1.8080 2.3814 15 6 0.5875 2.6203 1.3243 16 1 -0.4515 2.3060 1.2244 17 6 2.1975 -1.2687 -0.0006 18 1 3.2692 -1.0695 -0.0009 19 6 1.8279 -2.0705 -1.2502 20 7 2.0706 -1.2553 -2.4429 21 6 1.8112 -1.7670 -3.6864 22 1 1.4272 -2.7713 -3.7877 23 6 2.0407 -0.9944 -4.8166 24 7 2.5082 0.2298 -4.6931 25 14 1.6861 -1.6921 -6.5126 26 1 1.1709 -3.0785 -6.3798 27 1 0.6693 -0.8495 -7.1919 28 1 2.9359 -1.7028 -7.3148 29 6 1.8280 -2.0715 1.2483 30 6 2.9098 -2.2578 2.3141 31 6 2.4926 -3.4373 1.4324 32 1 -0.3634 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8901 -0.5139 35 1 2.2850 5.4521 0.8288 36 1 2.8956 4.1212 1.8582 37 1 -0.5046 4.3994 3.3073 38 1 0.8568 5.5326 3.1961 39 1 -0.1071 2.1546 3.9392 40 1 1.5101 1.6883 4.5262 41 1 1.0861 0.7537 2.2731 42 1 2.4133 1.9349 2.2352 43 1 2.4378 -2.9728 -1.2965 44 1 0.7742 -2.3459 -1.2066 45 1 2.4151 -0.3532 -2.3520 46 1 2.6689 0.7696 -5.4829 47 1 0.7984 -1.9629 1.5894 48 1 3.8849 -1.8087 2.1253 49 1 2.5921 -2.2717 3.3566 50 1 1.9005 -4.2268 1.8953 51 1 3.1934 -3.7637 0.6641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734302881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:07 Heat of formation + Delta-G solvation = -71.438963 kcal Electronic energy + Delta-G solvation = -32446.816060 eV Core-core repulsion = 28348.067454 eV Total energy + Delta-G solvation = -4098.748606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35516 -39.37769 -37.91157 -37.03468 -35.17765 -34.18937 -33.10005 -32.08014 -31.12782 -29.27923 -27.83207 -26.53987 -25.64564 -24.34649 -23.66713 -23.09122 -22.37497 -21.53733 -19.94991 -19.77847 -18.80549 -17.46596 -17.10882 -16.69559 -16.50228 -16.32001 -15.88592 -15.42308 -15.20549 -14.78496 -14.63853 -14.57885 -13.88648 -13.85290 -13.61800 -13.32247 -13.15630 -12.98666 -12.80379 -12.62154 -12.29422 -12.21090 -12.11344 -11.91404 -11.64085 -11.50611 -11.44810 -11.09631 -11.04788 -10.82664 -10.82441 -10.68737 -10.45814 -10.34542 -10.12697 -10.08477 -9.80337 -9.70921 -9.63332 -8.96155 -8.82567 -8.22842 -6.86904 -5.69775 -2.99946 2.94907 3.15027 3.45149 3.50241 3.53192 3.63936 3.82882 3.93398 4.01599 4.37704 4.51545 4.59649 4.73297 4.75350 4.80304 4.94306 5.00304 5.03937 5.08961 5.11087 5.17056 5.28176 5.31023 5.34528 5.38426 5.42762 5.51549 5.53573 5.60246 5.62275 5.69000 5.71741 5.79235 5.82211 5.86076 5.93026 5.98419 6.03530 6.13003 6.22333 6.25396 6.34492 6.52617 6.73993 6.84913 6.87172 7.05933 7.72955 7.75021 8.47144 8.60687 9.58570 10.17289 10.52365 11.52066 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.004106 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.677916 B = 6817.201860 C = 8441.319533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.516 3.484 4 O -0.521 6.521 5 C 0.070 3.930 6 H 0.106 0.894 7 O -0.345 6.345 8 C 0.058 3.942 9 C -0.157 4.157 10 H 0.096 0.904 11 C 0.074 3.926 12 O -0.375 6.375 13 C 0.062 3.938 14 C -0.164 4.164 15 C -0.104 4.104 16 H 0.106 0.894 17 C 0.163 3.837 18 H 0.100 0.900 19 C 0.148 3.852 20 N -0.728 5.728 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.927 5.927 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.157 4.157 30 C -0.179 4.179 31 C -0.170 4.170 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.021 0.979 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 4.504 20.254 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.327 5.327 3 C 0.304 3.696 4 O -0.396 6.396 5 C 0.008 3.992 6 H 0.124 0.876 7 O -0.263 6.263 8 C -0.019 4.019 9 C -0.175 4.175 10 H 0.114 0.886 11 C -0.003 4.003 12 O -0.293 6.293 13 C -0.014 4.014 14 C -0.202 4.202 15 C -0.122 4.122 16 H 0.124 0.876 17 C 0.059 3.941 18 H 0.118 0.882 19 C 0.020 3.980 20 N -0.373 5.373 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.575 5.575 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.176 4.176 30 C -0.216 4.216 31 C -0.208 4.208 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.038 0.962 45 H 0.221 0.779 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.570 4.526 20.060 21.913 hybrid contribution -0.599 -0.268 -1.238 1.401 sum -8.169 4.258 18.822 20.955 Atomic orbital electron populations 1.21804 0.80287 1.04087 1.00347 1.47536 1.06489 1.05259 1.73442 1.20519 0.88280 0.85034 0.75809 1.90701 1.13689 1.86740 1.48483 1.22904 0.90582 0.86725 0.98967 0.87643 1.88667 1.59925 1.36709 1.40992 1.23305 0.94880 0.95416 0.88288 1.22728 0.99597 0.96460 0.98760 0.88619 1.21835 0.95639 0.95187 0.87636 1.88138 1.62188 1.17390 1.61627 1.22579 0.99698 0.82535 0.96603 1.22428 1.02209 1.00815 0.94715 1.22697 1.00236 0.95081 0.94232 0.87585 1.20897 0.97912 0.82256 0.92988 0.88223 1.20921 0.97660 0.93509 0.85947 1.42322 1.78825 1.15806 1.00341 1.19232 1.36359 0.98002 0.83668 0.91262 1.24756 1.02061 0.96305 0.97724 1.69711 1.50845 1.08671 1.28269 0.86157 0.77404 0.77895 0.84952 1.20625 1.21958 1.21888 1.22526 0.97843 0.99404 0.97847 1.23009 0.99754 1.03010 0.95810 1.22921 1.03786 0.91152 1.02943 0.93321 0.91417 0.90168 0.89387 0.91339 0.92769 0.88556 0.92886 0.88668 0.89471 0.89875 0.95430 0.96156 0.77932 0.93567 0.87815 0.88707 0.89239 0.88883 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 7.65 59.85 0.46 1.43 16 2 N -0.59 -9.52 1.54 -173.93 -0.27 -9.78 16 3 C 0.52 9.51 4.62 -10.99 -0.05 9.46 16 4 O -0.52 -11.97 15.67 -14.06 -0.22 -12.19 16 5 C 0.07 1.07 2.87 -26.69 -0.08 0.99 16 6 H 0.11 1.61 7.20 -51.93 -0.37 1.24 16 7 O -0.35 -6.01 10.59 -54.86 -0.58 -6.59 16 8 C 0.06 0.72 6.78 37.67 0.26 0.98 16 9 C -0.16 -1.49 3.02 -90.45 -0.27 -1.76 16 10 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 11 C 0.07 0.60 6.17 36.13 0.22 0.83 16 12 O -0.38 -3.93 10.58 -35.23 -0.37 -4.31 16 13 C 0.06 0.57 6.82 37.01 0.25 0.82 16 14 C -0.16 -1.81 3.88 -26.81 -0.10 -1.92 16 15 C -0.10 -1.10 2.53 -88.68 -0.22 -1.32 16 16 H 0.11 0.87 7.26 -51.93 -0.38 0.50 16 17 C 0.16 2.77 2.42 -67.93 -0.16 2.61 16 18 H 0.10 2.01 6.66 -51.93 -0.35 1.67 16 19 C 0.15 2.99 5.27 -4.04 -0.02 2.96 16 20 N -0.73 -18.96 5.43 -59.91 -0.33 -19.28 16 21 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 25 Si 0.90 22.81 29.55 -169.99 -5.02 17.79 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 29 C -0.16 -2.01 5.22 -90.62 -0.47 -2.48 16 30 C -0.18 -2.10 10.18 -26.70 -0.27 -2.37 16 31 C -0.17 -2.00 9.79 -26.70 -0.26 -2.27 16 32 H 0.05 0.45 6.82 -51.93 -0.35 0.09 16 33 H 0.07 0.81 6.00 -51.93 -0.31 0.50 16 34 H 0.08 1.08 6.53 -51.92 -0.34 0.74 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 37 H 0.05 0.36 8.13 -51.93 -0.42 -0.07 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.95 5.76 -51.93 -0.30 0.65 16 42 H 0.08 1.22 6.38 -51.93 -0.33 0.88 16 43 H 0.03 0.57 7.47 -51.93 -0.39 0.18 16 44 H 0.02 0.40 6.88 -51.93 -0.36 0.04 16 45 H 0.39 11.04 7.06 -40.82 -0.29 10.75 16 46 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.10 1.17 7.43 -51.93 -0.39 0.78 16 48 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -35.91 386.33 -9.50 -45.42 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.28 Total: 11.04 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.98 Total: 0.49 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.13 Total: -57.47 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.17 Total: -23.09 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.91 -9.50 -45.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734302881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.022 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds