Wall clock time and date at job start Tue Mar 31 2020 21:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99710 * 2 1 4 4 O 1.21289 * 119.99746 * 185.08867 * 3 2 1 5 5 C 1.50693 * 120.00193 * 5.09011 * 3 2 1 6 6 H 1.09004 * 109.85972 * 307.08279 * 5 3 2 7 7 O 1.43358 * 109.86583 * 186.10755 * 5 3 2 8 8 C 1.44252 * 109.82686 * 240.57182 * 7 5 3 9 9 C 1.53999 * 104.54221 * 336.26724 * 8 7 5 10 10 H 1.09000 * 109.50077 * 281.44208 * 9 8 7 11 11 C 1.50953 * 112.60476 * 159.10447 * 9 8 7 12 12 O 1.42687 * 111.79149 * 293.71208 * 11 9 8 13 13 C 1.43253 * 112.53216 * 299.94451 * 12 11 9 14 14 C 1.52726 * 108.26605 * 65.59145 * 13 12 11 15 15 C 1.53115 * 110.61359 * 299.80339 * 14 13 12 16 16 H 1.08996 * 112.28622 * 283.02745 * 15 14 13 17 17 C 1.46490 * 120.00048 * 180.02562 * 2 1 3 18 18 H 1.09002 * 109.47245 * 355.57092 * 17 2 1 19 19 C 1.53002 * 109.47350 * 115.57018 * 17 2 1 20 20 N 1.46495 * 109.46933 * 302.56425 * 19 17 2 21 21 C 1.36936 * 120.00157 * 184.70508 * 20 19 17 22 22 H 1.08012 * 119.99940 * 5.11252 * 21 20 19 23 23 C 1.38809 * 120.00400 * 184.83905 * 21 20 19 24 24 N 1.31622 * 119.99783 * 355.07833 * 23 21 20 25 25 Si 1.86803 * 120.00101 * 175.08547 * 23 21 20 26 26 H 1.48494 * 109.47254 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47127 * 119.99750 * 25 23 21 28 28 H 1.48500 * 109.47041 * 239.99708 * 25 23 21 29 29 C 1.52996 * 109.47159 * 235.56958 * 17 2 1 30 30 C 1.53000 * 117.50140 * 248.62195 * 29 17 2 31 31 C 1.53001 * 60.00270 * 252.50942 * 30 29 17 32 32 H 1.09001 * 109.47006 * 269.99999 * 1 2 3 33 33 H 1.09005 * 109.47296 * 29.99795 * 1 2 3 34 34 H 1.08998 * 109.47170 * 149.99843 * 1 2 3 35 35 H 1.08997 * 110.35409 * 217.53337 * 8 7 5 36 36 H 1.09002 * 110.48271 * 95.06081 * 8 7 5 37 37 H 1.09002 * 109.01532 * 173.12504 * 11 9 8 38 38 H 1.08990 * 108.96011 * 54.27080 * 11 9 8 39 39 H 1.09008 * 109.70439 * 305.90184 * 13 12 11 40 40 H 1.08999 * 109.74200 * 185.30832 * 13 12 11 41 41 H 1.09005 * 109.24795 * 179.51062 * 14 13 12 42 42 H 1.08999 * 109.24283 * 60.09975 * 14 13 12 43 43 H 1.09003 * 109.47438 * 182.56211 * 19 17 2 44 44 H 1.09000 * 109.47102 * 62.56518 * 19 17 2 45 45 H 0.96995 * 120.00493 * 4.71198 * 20 19 17 46 46 H 0.96996 * 119.99675 * 180.02562 * 24 23 21 47 47 H 1.09000 * 115.54941 * 34.33400 * 29 17 2 48 48 H 1.08999 * 117.50071 * 359.97438 * 30 29 17 49 49 H 1.09001 * 117.50080 * 145.02648 * 30 29 17 50 50 H 1.09001 * 117.49792 * 252.50961 * 31 30 29 51 51 H 1.09002 * 117.49940 * 107.48721 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3481 1.1693 -0.0932 5 6 1.3898 2.4697 0.1158 6 1 0.6086 2.5164 -0.6430 7 8 2.2954 3.5688 -0.0491 8 6 2.2988 4.3828 1.1417 9 6 0.9396 4.0993 1.8079 10 1 0.1592 4.6629 1.2966 11 6 0.9322 4.4390 3.2787 12 8 1.8015 3.5871 4.0234 13 6 1.4371 2.2056 3.9204 14 6 1.6378 1.7643 2.4721 15 6 0.7600 2.5923 1.5296 16 1 -0.2830 2.2767 1.5522 17 6 2.1975 -1.2686 -0.0006 18 1 1.4918 -2.0957 0.0784 19 6 2.9917 -1.3985 -1.3018 20 7 2.0780 -1.3041 -2.4430 21 6 2.5498 -1.4898 -3.7151 22 1 3.5763 -1.7868 -3.8724 23 6 1.7073 -1.3018 -4.8022 24 7 0.4319 -1.0402 -4.6089 25 14 2.3837 -1.4203 -6.5394 26 1 3.8368 -1.7212 -6.4855 27 1 1.6802 -2.5037 -7.2717 28 1 2.1718 -0.1293 -7.2422 29 6 3.1588 -1.3030 1.1892 30 6 4.6578 -1.2479 0.8881 31 6 4.0210 -2.5548 1.3649 32 1 -0.3633 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8899 -0.5138 35 1 2.3814 5.4376 0.8797 36 1 3.1147 4.0890 1.8022 37 1 -0.0825 4.3336 3.6624 38 1 1.2540 5.4726 3.4051 39 1 0.3914 2.0794 4.2014 40 1 2.0688 1.6081 4.5776 41 1 1.3730 0.7111 2.3773 42 1 2.6844 1.8970 2.1979 43 1 3.5005 -2.3622 -1.3224 44 1 3.7286 -0.5974 -1.3592 45 1 1.1388 -1.1101 -2.2977 46 1 -0.1568 -0.9092 -5.3685 47 1 2.8077 -0.8030 2.0919 48 1 4.9593 -1.1875 -0.1577 49 1 5.2933 -0.7114 1.5927 50 1 4.2374 -2.8780 2.3831 51 1 3.9033 -3.3538 0.6328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734302882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:09 Heat of formation + Delta-G solvation = -88.956349 kcal Electronic energy + Delta-G solvation = -32687.092040 eV Core-core repulsion = 28587.583823 eV Total energy + Delta-G solvation = -4099.508217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.37996 -40.65257 -38.87682 -38.02501 -36.48960 -35.92384 -34.18078 -33.19159 -32.71084 -30.53718 -29.21927 -27.37333 -26.49779 -26.16350 -24.55653 -24.22073 -23.96541 -23.01637 -21.44843 -20.55336 -19.71470 -19.08799 -18.23299 -17.76256 -17.56571 -17.34832 -16.83935 -16.53875 -16.30900 -16.18044 -15.94301 -15.66019 -15.40095 -15.10079 -14.80509 -14.66621 -14.55218 -14.24025 -13.88703 -13.71014 -13.60881 -13.41708 -13.13105 -13.03546 -12.97959 -12.85611 -12.66581 -12.54429 -12.30163 -12.27725 -12.02335 -12.00625 -11.75632 -11.67474 -11.32569 -11.20129 -11.15356 -10.97900 -10.85776 -10.50136 -10.07808 -9.48387 -8.96645 -7.99259 -5.25016 1.41452 1.43542 1.52893 1.70690 1.97385 2.51945 2.81264 2.96570 3.00001 3.17589 3.34017 3.43705 3.58677 3.74342 3.86034 3.92600 3.95833 4.03991 4.11964 4.18025 4.21245 4.25967 4.33625 4.35048 4.39629 4.51692 4.51726 4.56617 4.62752 4.66852 4.68590 4.75008 4.79085 4.81361 4.84768 4.89314 4.95890 4.99089 5.07101 5.12361 5.17329 5.24708 5.30093 5.34270 5.44630 5.70348 5.86764 6.21691 6.25046 6.54625 7.31870 7.37197 8.06020 8.35038 9.24090 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003950 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.557365 B = 7086.072669 C = 8162.442155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.508 3.492 4 O -0.554 6.554 5 C 0.061 3.939 6 H 0.101 0.899 7 O -0.388 6.388 8 C 0.051 3.949 9 C -0.144 4.144 10 H 0.117 0.883 11 C 0.072 3.928 12 O -0.397 6.397 13 C 0.064 3.936 14 C -0.156 4.156 15 C -0.089 4.089 16 H 0.140 0.860 17 C 0.181 3.819 18 H 0.100 0.900 19 C 0.140 3.860 20 N -0.735 5.735 21 C -0.247 4.247 22 H 0.062 0.938 23 C -0.066 4.066 24 N -0.960 5.960 25 Si 0.966 3.034 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.293 1.293 29 C -0.149 4.149 30 C -0.173 4.173 31 C -0.158 4.158 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.119 0.881 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 7.575 22.654 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.333 5.333 3 C 0.297 3.703 4 O -0.431 6.431 5 C 0.000 4.000 6 H 0.119 0.881 7 O -0.307 6.307 8 C -0.025 4.025 9 C -0.163 4.163 10 H 0.135 0.865 11 C -0.005 4.005 12 O -0.316 6.316 13 C -0.012 4.012 14 C -0.194 4.194 15 C -0.108 4.108 16 H 0.158 0.842 17 C 0.077 3.923 18 H 0.118 0.882 19 C 0.012 3.988 20 N -0.378 5.378 21 C -0.379 4.379 22 H 0.080 0.920 23 C -0.259 4.259 24 N -0.610 5.610 25 Si 0.795 3.205 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.220 1.220 29 C -0.168 4.168 30 C -0.211 4.211 31 C -0.195 4.195 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.210 0.790 46 H 0.061 0.939 47 H 0.131 0.869 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.137 0.863 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.253 7.665 22.399 24.054 hybrid contribution 0.126 -0.164 -1.833 1.844 sum -4.127 7.502 20.567 22.278 Atomic orbital electron populations 1.22124 0.77823 1.03817 1.03343 1.47768 1.07628 1.04600 1.73287 1.21002 0.88023 0.85935 0.75388 1.90661 1.15889 1.87263 1.49288 1.23076 0.91074 0.85088 1.00744 0.88126 1.88654 1.65266 1.38339 1.38434 1.23516 0.97555 0.95777 0.85673 1.22727 0.98347 0.95855 0.99377 0.86489 1.22023 0.95645 0.95309 0.87506 1.88124 1.55624 1.17768 1.70097 1.22652 1.01900 0.82171 0.94496 1.22326 0.99415 1.00837 0.96831 1.22741 1.01673 0.95951 0.90419 0.84228 1.20656 0.93465 0.85679 0.92501 0.88202 1.21256 0.93162 0.97243 0.87107 1.42347 1.08128 1.85849 1.01521 1.19550 0.95697 1.37618 0.85074 0.92036 1.25420 0.96100 1.03140 1.01198 1.69778 1.03841 1.57057 1.30332 0.85186 0.77726 0.76907 0.80643 1.19975 1.21220 1.22014 1.22357 0.92408 1.03437 0.98605 1.22801 0.95751 1.01233 1.01272 1.23098 1.02406 0.90728 1.03303 0.88752 0.90915 0.91399 0.87842 0.93317 0.90012 0.87309 0.90075 0.88418 0.89583 0.93753 0.96111 0.96418 0.78962 0.93884 0.86853 0.91004 0.89275 0.86287 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.66 8.71 127.77 1.11 2.77 16 2 N -0.60 -18.66 1.65 -822.60 -1.36 -20.02 16 3 C 0.51 18.11 4.25 87.65 0.37 18.48 16 4 O -0.55 -24.69 12.66 15.65 0.20 -24.49 16 5 C 0.06 1.78 2.90 30.62 0.09 1.87 16 6 H 0.10 2.87 6.89 -2.38 -0.02 2.85 16 7 O -0.39 -13.24 10.61 -130.27 -1.38 -14.62 16 8 C 0.05 1.21 6.79 72.32 0.49 1.70 16 9 C -0.14 -2.27 3.02 -10.68 -0.03 -2.30 16 10 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 11 C 0.07 0.89 6.17 71.32 0.44 1.33 16 12 O -0.40 -7.22 10.58 -148.98 -1.58 -8.79 16 13 C 0.06 0.96 6.82 71.89 0.49 1.45 16 14 C -0.16 -3.08 3.92 30.54 0.12 -2.96 16 15 C -0.09 -1.61 2.83 -9.54 -0.03 -1.63 16 16 H 0.14 1.58 7.67 -2.39 -0.02 1.56 16 17 C 0.18 6.07 2.59 44.99 0.12 6.19 16 18 H 0.10 3.09 7.83 -2.39 -0.02 3.07 16 19 C 0.14 6.27 4.18 86.38 0.36 6.63 16 20 N -0.74 -39.28 5.47 -343.45 -1.88 -41.16 16 21 C -0.25 -14.74 9.98 84.03 0.84 -13.90 16 22 H 0.06 3.66 7.83 -2.90 -0.02 3.64 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.96 -58.56 13.07 21.65 0.28 -58.28 16 25 Si 0.97 48.11 29.56 68.60 2.03 50.14 16 26 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 29 C -0.15 -4.27 4.77 -10.79 -0.05 -4.32 16 30 C -0.17 -5.51 8.53 30.59 0.26 -5.25 16 31 C -0.16 -3.96 9.92 30.60 0.30 -3.65 16 32 H 0.09 1.36 7.62 -2.39 -0.02 1.34 16 33 H 0.07 1.65 6.30 -2.38 -0.02 1.64 16 34 H 0.07 1.77 7.78 -2.39 -0.02 1.75 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.33 7.49 -2.39 -0.02 1.32 16 37 H 0.08 0.63 8.13 -2.39 -0.02 0.61 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.79 8.11 -2.38 -0.02 0.77 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.62 5.63 -2.38 -0.01 1.60 16 42 H 0.04 1.27 6.28 -2.39 -0.01 1.25 16 43 H 0.02 0.94 7.26 -2.39 -0.02 0.93 16 44 H 0.02 0.93 5.05 -2.39 -0.01 0.92 16 45 H 0.38 20.30 6.82 -92.71 -0.63 19.67 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.11 2.89 7.01 -2.39 -0.02 2.88 16 48 H 0.07 2.78 5.83 -2.39 -0.01 2.76 16 49 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 50 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.09 2.38 7.63 -2.39 -0.02 2.36 16 Total: -1.00 -80.13 380.10 1.97 -78.16 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.31 Total: 36.11 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.35 Total: 2.96 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -2.96 Total: -119.45 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.76 Total: -47.91 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -80.13 1.97 -78.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734302882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.800 kcal (2) G-P(sol) polarization free energy of solvation -80.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds