Wall clock time and date at job start Tue Mar 31 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47139 * 2 1 4 4 C 1.53003 * 109.46801 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46759 * 179.97438 * 4 3 2 6 6 C 1.37416 * 119.77725 * 270.02453 * 5 4 3 7 7 N 1.37250 * 120.41116 * 359.97438 * 6 5 4 8 8 C 1.38485 * 119.17696 * 179.97438 * 6 5 4 9 9 N 1.39919 * 120.62242 * 179.97438 * 8 6 5 10 10 C 1.36717 * 120.00033 * 65.41513 * 9 8 6 11 11 H 1.07997 * 119.99971 * 203.67872 * 10 9 8 12 12 C 1.38609 * 119.99857 * 23.68087 * 10 9 8 13 13 N 1.31742 * 120.00290 * 10.65207 * 12 10 9 14 14 Si 1.86803 * 119.99890 * 190.64578 * 12 10 9 15 15 H 1.48500 * 109.47022 * 60.00308 * 14 12 10 16 16 H 1.48494 * 109.47083 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47269 * 300.00414 * 14 12 10 18 18 C 1.46501 * 119.99780 * 245.41581 * 9 8 6 19 19 C 1.53006 * 109.46697 * 85.78924 * 18 9 8 20 20 C 1.53004 * 109.46588 * 179.97438 * 19 18 9 21 21 C 1.52995 * 109.47067 * 64.99838 * 20 19 18 22 22 C 1.53004 * 109.46843 * 185.00331 * 20 19 18 23 23 C 1.41099 * 118.75750 * 359.75447 * 8 6 5 24 24 O 1.21900 * 120.25712 * 180.27219 * 23 8 6 25 25 N 1.34746 * 119.48946 * 0.48952 * 23 8 6 26 26 H 0.97002 * 119.59806 * 179.77792 * 25 23 8 27 27 C 1.34453 * 120.79503 * 359.50537 * 25 23 8 28 28 O 1.21599 * 119.33784 * 180.23123 * 27 25 23 29 29 H 1.09006 * 109.47467 * 300.00259 * 1 2 3 30 30 H 1.09003 * 109.47325 * 59.99615 * 1 2 3 31 31 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46987 * 240.00226 * 2 1 3 33 33 H 1.08998 * 109.47751 * 120.00260 * 2 1 3 34 34 H 1.09000 * 109.46996 * 60.00232 * 3 2 1 35 35 H 1.08994 * 109.47224 * 299.99799 * 3 2 1 36 36 H 1.09000 * 109.47099 * 60.00365 * 4 3 2 37 37 H 1.08994 * 109.47126 * 299.99930 * 4 3 2 38 38 H 0.97001 * 120.00122 * 356.44910 * 7 6 5 39 39 H 0.97007 * 119.99744 * 176.43327 * 7 6 5 40 40 H 0.96991 * 120.00213 * 179.97438 * 13 12 10 41 41 H 1.08997 * 109.46727 * 205.78487 * 18 9 8 42 42 H 1.08992 * 109.47117 * 325.78951 * 18 9 8 43 43 H 1.08992 * 109.47212 * 299.99769 * 19 18 9 44 44 H 1.09001 * 109.47089 * 60.00150 * 19 18 9 45 45 H 1.09005 * 109.47241 * 304.99953 * 20 19 18 46 46 H 1.08997 * 109.47102 * 60.00296 * 21 20 19 47 47 H 1.09007 * 109.46888 * 179.97438 * 21 20 19 48 48 H 1.08995 * 109.47634 * 299.99790 * 21 20 19 49 49 H 1.08999 * 109.47254 * 59.99768 * 22 20 19 50 50 H 1.08996 * 109.46895 * 180.02562 * 22 20 19 51 51 H 1.09001 * 109.46420 * 299.99784 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2858 3.4665 -1.1930 7 7 4.0589 2.8225 -2.3836 8 6 4.7469 4.7723 -1.1791 9 7 4.9891 5.4554 -2.3759 10 6 3.9522 5.7503 -3.2167 11 1 4.1392 5.9153 -4.2674 12 6 2.6609 5.8373 -2.7205 13 7 2.4543 5.8458 -1.4194 14 14 1.2135 5.9429 -3.8966 15 1 1.1861 4.7332 -4.7576 16 1 -0.0497 6.0274 -3.1206 17 1 1.3536 7.1524 -4.7467 18 6 6.3540 5.8546 -2.7280 19 6 7.0572 4.6959 -3.4379 20 6 8.4824 5.1131 -3.8062 21 6 9.2892 5.3548 -2.5289 22 6 9.1435 4.0022 -4.6246 23 6 4.9633 5.4026 0.0647 24 8 5.3640 6.5530 0.1088 25 7 4.7278 4.7216 1.2033 26 1 4.8791 5.1523 2.0591 27 6 4.2804 3.4542 1.1673 28 8 4.0726 2.8659 2.2110 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9336 0.9285 -0.8891 37 1 3.9329 0.9288 0.8908 38 1 3.7854 1.8918 -2.3871 39 1 4.1717 3.2981 -3.2215 40 1 1.5508 5.9071 -1.0722 41 1 6.3200 6.7195 -3.3905 42 1 6.9024 6.1122 -1.8220 43 1 7.0911 3.8310 -2.7755 44 1 6.5087 4.4384 -4.3440 45 1 8.4519 6.0296 -4.3956 46 1 9.3197 4.4384 -1.9396 47 1 10.3047 5.6516 -2.7914 48 1 8.8182 6.1462 -1.9459 49 1 8.5687 3.8300 -5.5346 50 1 10.1590 4.2992 -4.8866 51 1 9.1740 3.0858 -4.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055121478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:34 Heat of formation + Delta-G solvation = -40.702957 kcal Electronic energy + Delta-G solvation = -32334.036432 eV Core-core repulsion = 28268.913391 eV Total energy + Delta-G solvation = -4065.123042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.21591 -38.12188 -37.44086 -36.52890 -35.36113 -34.64307 -33.48831 -32.42928 -31.45400 -29.60191 -28.42447 -27.11269 -26.81626 -24.23959 -23.95601 -22.83224 -22.14085 -21.21478 -20.68530 -19.52329 -18.63782 -18.30031 -16.65873 -16.37577 -15.88205 -15.57435 -15.33872 -15.09317 -14.79055 -14.70341 -14.37997 -13.99097 -13.96247 -13.79292 -13.40686 -13.03290 -12.88148 -12.82493 -12.68868 -12.36066 -12.18385 -12.00804 -11.91915 -11.43347 -11.29342 -11.19960 -11.11964 -11.04398 -10.93520 -10.75891 -10.54157 -10.48251 -10.39405 -10.32394 -10.25228 -10.03159 -9.76167 -9.28390 -9.09668 -8.85402 -8.68895 -7.32262 -6.40718 -5.50577 -3.36862 2.61185 2.78330 3.00796 3.26344 3.33293 3.35309 4.17132 4.35005 4.52435 4.74730 4.89032 5.00569 5.07963 5.09513 5.20631 5.25617 5.31873 5.39544 5.50551 5.54808 5.61188 5.76652 5.79926 5.83598 5.88238 5.92850 6.03345 6.07434 6.10266 6.16318 6.21667 6.24761 6.30673 6.39026 6.42286 6.49141 6.56436 6.65267 6.67499 6.73702 6.98457 7.04178 7.15408 7.32680 7.63403 7.95340 8.18432 8.28745 8.51766 8.69647 9.08866 9.30660 9.81361 10.23367 11.14574 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009047 B = 0.005051 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.171047 B = 5542.329163 C = 6447.057231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.138 4.138 4 C 0.117 3.883 5 N -0.530 5.530 6 C 0.384 3.616 7 N -0.840 5.840 8 C 0.013 3.987 9 N -0.490 5.490 10 C -0.278 4.278 11 H 0.077 0.923 12 C 0.021 3.979 13 N -0.870 5.870 14 Si 0.900 3.100 15 H -0.283 1.283 16 H -0.292 1.292 17 H -0.282 1.282 18 C 0.146 3.854 19 C -0.128 4.128 20 C -0.096 4.096 21 C -0.147 4.147 22 C -0.143 4.143 23 C 0.565 3.435 24 O -0.542 6.542 25 N -0.663 5.663 26 H 0.413 0.587 27 C 0.709 3.291 28 O -0.585 6.585 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.380 0.620 39 H 0.424 0.576 40 H 0.254 0.746 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.046 0.954 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -11.460 -2.070 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.177 4.177 4 C -0.006 4.006 5 N -0.258 5.258 6 C 0.173 3.827 7 N -0.388 5.388 8 C -0.099 4.099 9 N -0.201 5.201 10 C -0.407 4.407 11 H 0.094 0.906 12 C -0.181 4.181 13 N -0.511 5.511 14 Si 0.730 3.270 15 H -0.210 1.210 16 H -0.218 1.218 17 H -0.208 1.208 18 C 0.020 3.980 19 C -0.167 4.167 20 C -0.115 4.115 21 C -0.204 4.204 22 C -0.201 4.201 23 C 0.363 3.637 24 O -0.420 6.420 25 N -0.330 5.330 26 H 0.253 0.747 27 C 0.411 3.589 28 O -0.464 6.464 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.208 0.792 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.451 -11.113 -1.537 12.070 hybrid contribution -1.437 0.248 -0.536 1.553 sum 3.014 -10.865 -2.073 11.464 Atomic orbital electron populations 1.21748 0.95764 1.01274 1.02107 1.21425 0.96092 0.96200 1.01913 1.22008 0.94634 0.97244 1.03764 1.21590 0.94759 0.80577 1.03670 1.44245 1.63018 1.14393 1.04095 1.18356 0.96976 0.88750 0.78597 1.41849 1.77477 1.13462 1.05985 1.15859 1.19080 0.87744 0.87199 1.40646 1.02413 1.59670 1.17395 1.19201 0.86054 1.45048 0.90377 0.90575 1.25008 0.98211 0.99574 0.95352 1.69950 1.20016 1.50604 1.10484 0.86426 0.82248 0.78168 0.80192 1.20974 1.21753 1.20834 1.21023 0.85127 0.94179 0.97637 1.22174 0.93584 1.00417 1.00571 1.21084 0.95812 0.98321 0.96254 1.21869 0.98940 1.01843 0.97754 1.21824 0.99697 0.98799 0.99731 1.17587 0.76600 0.86068 0.83415 1.90765 1.47808 1.16838 1.86587 1.44594 1.62940 1.12850 1.12615 0.74750 1.15423 0.78729 0.81564 0.83164 1.90931 1.59350 1.65795 1.30295 0.92689 0.92698 0.92900 0.92001 0.91806 0.91026 0.91097 0.90106 0.88666 0.79232 0.73981 0.93532 0.93123 0.93385 0.92768 0.92502 0.91643 0.93140 0.93679 0.92036 0.93039 0.93497 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.15 0.37 -1.18 16 2 C -0.12 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.14 -1.87 5.54 -26.73 -0.15 -2.02 16 4 C 0.12 1.60 4.94 -4.04 -0.02 1.58 16 5 N -0.53 -9.49 2.62 -120.33 -0.32 -9.81 16 6 C 0.38 7.42 7.01 -152.45 -1.07 6.35 16 7 N -0.84 -13.65 8.75 31.57 0.28 -13.38 16 8 C 0.01 0.30 3.15 -82.99 -0.26 0.04 16 9 N -0.49 -11.17 2.05 -112.61 -0.23 -11.40 16 10 C -0.28 -6.74 7.98 -15.24 -0.12 -6.87 16 11 H 0.08 1.79 7.85 -52.49 -0.41 1.38 16 12 C 0.02 0.53 5.15 -17.45 -0.09 0.44 16 13 N -0.87 -23.49 10.76 55.48 0.60 -22.90 16 14 Si 0.90 20.21 29.57 -169.99 -5.03 15.19 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.15 2.93 5.21 -4.04 -0.02 2.91 16 19 C -0.13 -2.06 5.00 -26.73 -0.13 -2.19 16 20 C -0.10 -1.30 2.92 -90.62 -0.26 -1.56 16 21 C -0.15 -1.97 8.95 37.15 0.33 -1.63 16 22 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 23 C 0.56 13.52 7.02 -15.19 -0.11 13.41 16 24 O -0.54 -14.60 16.80 5.01 0.08 -14.52 16 25 N -0.66 -13.84 5.20 -18.67 -0.10 -13.94 16 26 H 0.41 7.81 8.87 -40.82 -0.36 7.45 16 27 C 0.71 14.23 8.37 -87.44 -0.73 13.50 16 28 O -0.59 -12.16 16.64 5.28 0.09 -12.07 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.88 6.38 -51.93 -0.33 0.55 16 37 H 0.10 1.28 7.37 -51.93 -0.38 0.90 16 38 H 0.38 4.88 6.70 -40.82 -0.27 4.61 16 39 H 0.42 7.44 6.91 -40.82 -0.28 7.15 16 40 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.05 1.04 8.00 -51.93 -0.42 0.62 16 42 H 0.05 1.03 5.66 -51.93 -0.29 0.73 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 404.71 15.07 6.10 6.10 Total: -1.00 -30.85 404.71 -9.18 -40.02 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -8.57 Total: 16.60 kcal Atomic # 6 Polarization: 22.17 SS G_CDS: -2.08 Total: 20.09 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: 0.23 Total: -71.42 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: 0.17 Total: -26.59 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.85 -9.18 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055121478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.678 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds