Wall clock time and date at job start Tue Mar 31 2020 21:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47284 * 185.30667 * 3 2 1 5 5 O 1.42903 * 109.47049 * 61.32005 * 4 3 2 6 6 C 1.53004 * 109.47050 * 181.31730 * 4 3 2 7 7 C 1.53000 * 109.47150 * 305.00010 * 6 4 3 8 8 C 1.52994 * 109.47069 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47068 * 301.31705 * 4 3 2 10 10 N 1.46500 * 109.46999 * 182.80794 * 9 4 3 11 11 C 1.34773 * 119.99975 * 174.12858 * 10 9 4 12 12 O 1.21588 * 120.00020 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99986 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99803 * 180.02562 * 13 11 10 15 15 C 1.40405 * 125.97374 * 0.02562 * 14 13 11 16 16 C 1.35241 * 107.86710 * 179.73900 * 15 14 13 17 17 N 1.34970 * 107.85834 * 0.36581 * 16 15 14 18 18 C 1.46496 * 125.97821 * 179.90074 * 17 16 15 19 19 C 1.50693 * 109.47617 * 124.71175 * 18 17 16 20 20 H 1.08005 * 119.99546 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00676 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99658 * 359.72088 * 21 19 18 23 23 Si 1.86796 * 120.00411 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47007 * 179.72203 * 23 21 19 25 25 H 1.48501 * 109.47075 * 299.72125 * 23 21 19 26 26 H 1.48492 * 109.47495 * 59.72155 * 23 21 19 27 27 N 1.31210 * 125.97062 * 179.97438 * 14 13 11 28 28 H 1.08996 * 109.47097 * 299.99508 * 1 2 3 29 29 H 1.08991 * 109.46852 * 60.00503 * 1 2 3 30 30 H 1.09005 * 109.46300 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47575 * 239.99779 * 2 1 3 32 32 H 1.09003 * 109.47238 * 120.00041 * 2 1 3 33 33 H 1.09001 * 109.46763 * 65.30520 * 3 2 1 34 34 H 1.09003 * 109.46929 * 305.30898 * 3 2 1 35 35 H 0.96699 * 113.99434 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46746 * 64.99612 * 6 4 3 37 37 H 1.08990 * 109.47031 * 184.99843 * 6 4 3 38 38 H 1.08997 * 109.47205 * 300.00392 * 7 6 4 39 39 H 1.09006 * 109.47189 * 59.99679 * 7 6 4 40 40 H 1.09000 * 109.47334 * 299.99518 * 8 7 6 41 41 H 1.08993 * 109.47525 * 60.00010 * 8 7 6 42 42 H 1.09008 * 109.47131 * 180.02562 * 8 7 6 43 43 H 1.09001 * 109.47409 * 62.80464 * 9 4 3 44 44 H 1.08998 * 109.47156 * 302.80473 * 9 4 3 45 45 H 0.97002 * 120.00087 * 354.12524 * 10 9 4 46 46 H 0.96995 * 119.99816 * 0.02562 * 13 11 10 47 47 H 1.07999 * 126.06681 * 359.96508 * 15 14 13 48 48 H 1.07999 * 126.07534 * 180.25869 * 16 15 14 49 49 H 1.09007 * 109.47100 * 4.71003 * 18 17 16 50 50 H 1.09004 * 109.47089 * 244.71306 * 18 17 16 51 51 H 0.97005 * 119.99489 * 0.27952 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4446 -0.1334 5 8 3.9348 0.8354 -1.3718 6 6 4.0771 2.8857 -0.1004 7 6 3.3689 3.7040 -1.1820 8 6 3.8813 5.1452 -1.1485 9 6 4.1787 0.6579 1.0260 10 7 5.6397 0.7162 0.9357 11 6 6.3972 0.1924 1.9197 12 8 5.8680 -0.3291 2.8821 13 7 7.7414 0.2456 1.8363 14 6 8.5293 -0.2998 2.8596 15 6 8.0530 -0.9282 4.0213 16 6 9.1231 -1.3197 4.7498 17 7 10.2362 -0.9482 4.0829 18 6 11.6164 -1.1752 4.5182 19 6 12.3684 -1.9123 3.4402 20 1 11.8683 -2.1841 2.5224 21 6 13.6948 -2.2397 3.6256 22 7 14.3053 -1.9039 4.7410 23 14 14.6271 -3.1528 2.2891 24 1 16.0279 -3.3776 2.7279 25 1 13.9723 -4.4611 2.0342 26 1 14.6225 -2.3458 1.0426 27 7 9.8408 -0.3131 2.8986 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7564 1.9281 0.9337 34 1 1.6011 1.9830 -0.8387 35 1 4.8892 0.8025 -1.5238 36 1 3.8725 3.3218 0.8774 37 1 5.1514 2.8933 -0.2841 38 1 3.5733 3.2679 -2.1597 39 1 2.2945 3.6964 -0.9982 40 1 3.6764 5.5811 -0.1707 41 1 4.9556 5.1532 -1.3320 42 1 3.3764 5.7283 -1.9188 43 1 3.8526 -0.3809 0.9736 44 1 3.8555 1.0927 1.9718 45 1 6.0620 1.1319 0.1676 46 1 8.1636 0.6613 1.0683 47 1 7.0161 -1.0762 4.2846 48 1 9.0926 -1.8363 5.6977 49 1 11.6161 -1.7692 5.4321 50 1 12.0998 -0.2168 4.7080 51 1 13.8212 -1.4294 5.4349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173375455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:31 Heat of formation + Delta-G solvation = -22.728465 kcal Electronic energy + Delta-G solvation = -29246.351997 eV Core-core repulsion = 25182.008388 eV Total energy + Delta-G solvation = -4064.343609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89723 -40.15955 -39.04540 -34.94873 -34.81162 -34.49822 -34.44983 -33.62742 -31.05817 -30.32990 -29.36301 -27.03325 -26.80969 -25.88603 -23.17094 -22.46593 -21.94363 -21.76947 -20.59588 -20.44434 -19.95549 -18.32814 -17.21471 -17.16220 -16.53541 -16.12456 -15.84687 -15.55664 -15.15504 -14.93223 -14.78324 -14.49782 -14.16611 -13.93374 -13.82617 -13.78015 -13.42970 -13.15513 -13.13675 -12.73518 -12.49656 -12.41726 -12.23771 -12.20196 -11.98445 -11.82810 -11.67419 -11.41166 -11.16728 -11.05464 -10.96360 -10.81873 -10.69469 -10.47581 -10.22554 -10.17574 -10.16268 -9.76174 -9.35645 -8.98687 -8.58213 -8.19084 -7.48555 -6.58103 -4.32070 2.26874 2.57374 3.02779 3.37499 3.39079 3.46536 3.58672 3.70550 3.77453 4.11222 4.19640 4.21985 4.34611 4.41106 4.65980 4.75116 4.81064 4.85740 5.09014 5.10291 5.15459 5.21786 5.25693 5.34129 5.37152 5.41725 5.47146 5.52476 5.53109 5.59340 5.70157 5.72696 5.74608 5.85740 5.90124 5.94407 6.05107 6.09610 6.18629 6.40274 6.45566 6.63795 6.76115 6.90715 7.17571 7.40362 7.62020 7.84064 7.85829 8.34483 8.50153 8.55581 8.62976 9.36054 10.79319 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.001958 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.660528 B =14299.272398 C =14750.345337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.103 4.103 4 C 0.125 3.875 5 O -0.549 6.549 6 C -0.146 4.146 7 C -0.122 4.122 8 C -0.155 4.155 9 C 0.113 3.887 10 N -0.744 5.744 11 C 0.714 3.286 12 O -0.565 6.565 13 N -0.643 5.643 14 C 0.277 3.723 15 C -0.284 4.284 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.250 3.750 19 C -0.607 4.607 20 H 0.063 0.937 21 C 0.022 3.978 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.305 5.305 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.373 0.627 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.392 0.608 46 H 0.406 0.594 47 H 0.162 0.838 48 H 0.167 0.833 49 H 0.046 0.954 50 H 0.034 0.966 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.641 10.261 -11.116 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.141 4.141 4 C 0.084 3.916 5 O -0.355 6.355 6 C -0.184 4.184 7 C -0.160 4.160 8 C -0.212 4.212 9 C -0.012 4.012 10 N -0.402 5.402 11 C 0.413 3.587 12 O -0.440 6.440 13 N -0.293 5.293 14 C 0.023 3.977 15 C -0.315 4.315 16 C -0.099 4.099 17 N -0.100 5.100 18 C 0.131 3.869 19 C -0.645 4.645 20 H 0.081 0.919 21 C -0.183 4.183 22 N -0.540 5.540 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.136 5.136 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.220 0.780 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.226 0.774 46 H 0.241 0.759 47 H 0.179 0.821 48 H 0.185 0.815 49 H 0.064 0.936 50 H 0.052 0.948 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.123 9.397 -11.208 28.210 hybrid contribution -1.083 0.939 0.203 1.448 sum -25.205 10.336 -11.005 29.381 Atomic orbital electron populations 1.21774 0.95928 1.01709 1.01562 1.21575 0.95665 0.96371 1.02940 1.21627 0.91253 0.98279 1.02939 1.21529 0.95865 0.90939 0.83276 1.86594 1.28209 1.82427 1.38265 1.22309 1.00473 0.95033 1.00603 1.21530 1.00220 0.94968 0.99233 1.21797 1.01212 0.96494 1.01690 1.22039 0.77948 1.01849 0.99338 1.44983 1.06680 1.64715 1.23866 1.15581 0.80459 0.79500 0.83112 1.90876 1.71876 1.48942 1.32285 1.41366 1.03876 1.61158 1.22907 1.18777 0.89620 0.99288 0.90035 1.21520 1.00454 1.12914 0.96619 1.22558 0.86417 1.01441 0.99513 1.48759 1.07404 1.41041 1.12842 1.19749 0.73194 0.97417 0.96499 1.22100 0.98409 1.40338 1.03694 0.91865 1.25928 0.94798 0.96715 1.00812 1.70856 1.39634 1.37106 1.06418 0.83415 0.75975 0.75914 0.74303 1.20534 1.21237 1.21164 1.77340 1.08801 1.22215 1.05211 0.92863 0.92870 0.92720 0.90886 0.91733 0.90440 0.90288 0.77979 0.90634 0.91568 0.91333 0.91618 0.92811 0.92771 0.92759 0.90354 0.90290 0.77378 0.75900 0.82059 0.81534 0.93625 0.94814 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.13 -0.87 5.32 -26.73 -0.14 -1.02 16 3 C -0.10 -0.62 3.96 -26.73 -0.11 -0.73 16 4 C 0.13 0.78 0.50 -90.62 -0.05 0.73 16 5 O -0.55 -3.71 11.81 -35.23 -0.42 -4.13 16 6 C -0.15 -0.82 4.20 -26.73 -0.11 -0.93 16 7 C -0.12 -0.67 5.34 -26.73 -0.14 -0.81 16 8 C -0.15 -0.84 9.91 37.15 0.37 -0.47 16 9 C 0.11 0.94 4.37 -4.04 -0.02 0.93 16 10 N -0.74 -6.74 5.04 -65.23 -0.33 -7.07 16 11 C 0.71 10.12 8.53 -86.91 -0.74 9.38 16 12 O -0.56 -10.03 13.46 5.29 0.07 -9.96 16 13 N -0.64 -9.75 5.46 -15.50 -0.08 -9.83 16 14 C 0.28 5.58 8.11 -154.36 -1.25 4.32 16 15 C -0.28 -5.69 9.61 -39.83 -0.38 -6.08 16 16 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 18 C 0.25 6.34 5.57 -5.20 -0.03 6.31 16 19 C -0.61 -17.12 9.23 -34.44 -0.32 -17.43 16 20 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 21 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 22 N -0.90 -26.36 13.65 55.43 0.76 -25.60 16 23 Si 1.08 24.94 29.90 -169.99 -5.08 19.86 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.30 -7.06 12.42 31.44 0.39 -6.67 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.06 0.48 6.77 -51.93 -0.35 0.12 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.47 6.42 -51.93 -0.33 0.13 16 35 H 0.37 1.64 7.93 45.56 0.36 2.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.34 6.98 -51.93 -0.36 -0.02 16 38 H 0.07 0.41 7.82 -51.93 -0.41 0.01 16 39 H 0.07 0.35 6.38 -51.93 -0.33 0.02 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.28 8.14 -51.92 -0.42 -0.15 16 43 H 0.08 0.76 6.68 -51.93 -0.35 0.42 16 44 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.39 2.35 6.47 -40.82 -0.26 2.09 16 46 H 0.41 4.89 8.84 -40.82 -0.36 4.53 16 47 H 0.16 3.17 5.91 -52.49 -0.31 2.86 16 48 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 49 H 0.05 1.12 7.94 -51.92 -0.41 0.71 16 50 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 51 H 0.27 7.61 7.22 -40.82 -0.29 7.31 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -34.46 408.23 -9.27 -43.73 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.65 Total: 6.23 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.85 Total: -4.99 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.50 Total: -56.89 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.34 Total: -14.08 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.46 -9.27 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173375455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.005 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds