Wall clock time and date at job start Tue Mar 31 2020 21:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47284 * 185.30667 * 3 2 1 5 5 O 1.42903 * 109.47049 * 61.32005 * 4 3 2 6 6 C 1.53004 * 109.47050 * 181.31730 * 4 3 2 7 7 C 1.53000 * 109.47150 * 305.00010 * 6 4 3 8 8 C 1.52994 * 109.47069 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47068 * 301.31705 * 4 3 2 10 10 N 1.46500 * 109.46999 * 182.80794 * 9 4 3 11 11 C 1.34773 * 119.99975 * 174.12858 * 10 9 4 12 12 O 1.21588 * 120.00020 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99986 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99803 * 180.02562 * 13 11 10 15 15 C 1.40405 * 125.97374 * 0.02562 * 14 13 11 16 16 C 1.35241 * 107.86710 * 179.73900 * 15 14 13 17 17 N 1.34970 * 107.85834 * 0.36581 * 16 15 14 18 18 C 1.46496 * 125.97821 * 179.90074 * 17 16 15 19 19 C 1.50693 * 109.47617 * 124.71175 * 18 17 16 20 20 H 1.08005 * 119.99546 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00676 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99658 * 359.72088 * 21 19 18 23 23 Si 1.86796 * 120.00411 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47007 * 179.72203 * 23 21 19 25 25 H 1.48501 * 109.47075 * 299.72125 * 23 21 19 26 26 H 1.48492 * 109.47495 * 59.72155 * 23 21 19 27 27 N 1.31210 * 125.97062 * 179.97438 * 14 13 11 28 28 H 1.08996 * 109.47097 * 299.99508 * 1 2 3 29 29 H 1.08991 * 109.46852 * 60.00503 * 1 2 3 30 30 H 1.09005 * 109.46300 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47575 * 239.99779 * 2 1 3 32 32 H 1.09003 * 109.47238 * 120.00041 * 2 1 3 33 33 H 1.09001 * 109.46763 * 65.30520 * 3 2 1 34 34 H 1.09003 * 109.46929 * 305.30898 * 3 2 1 35 35 H 0.96699 * 113.99434 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46746 * 64.99612 * 6 4 3 37 37 H 1.08990 * 109.47031 * 184.99843 * 6 4 3 38 38 H 1.08997 * 109.47205 * 300.00392 * 7 6 4 39 39 H 1.09006 * 109.47189 * 59.99679 * 7 6 4 40 40 H 1.09000 * 109.47334 * 299.99518 * 8 7 6 41 41 H 1.08993 * 109.47525 * 60.00010 * 8 7 6 42 42 H 1.09008 * 109.47131 * 180.02562 * 8 7 6 43 43 H 1.09001 * 109.47409 * 62.80464 * 9 4 3 44 44 H 1.08998 * 109.47156 * 302.80473 * 9 4 3 45 45 H 0.97002 * 120.00087 * 354.12524 * 10 9 4 46 46 H 0.96995 * 119.99816 * 0.02562 * 13 11 10 47 47 H 1.07999 * 126.06681 * 359.96508 * 15 14 13 48 48 H 1.07999 * 126.07534 * 180.25869 * 16 15 14 49 49 H 1.09007 * 109.47100 * 4.71003 * 18 17 16 50 50 H 1.09004 * 109.47089 * 244.71306 * 18 17 16 51 51 H 0.97005 * 119.99489 * 0.27952 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4446 -0.1334 5 8 3.9348 0.8354 -1.3718 6 6 4.0771 2.8857 -0.1004 7 6 3.3689 3.7040 -1.1820 8 6 3.8813 5.1452 -1.1485 9 6 4.1787 0.6579 1.0260 10 7 5.6397 0.7162 0.9357 11 6 6.3972 0.1924 1.9197 12 8 5.8680 -0.3291 2.8821 13 7 7.7414 0.2456 1.8363 14 6 8.5293 -0.2998 2.8596 15 6 8.0530 -0.9282 4.0213 16 6 9.1231 -1.3197 4.7498 17 7 10.2362 -0.9482 4.0829 18 6 11.6164 -1.1752 4.5182 19 6 12.3684 -1.9123 3.4402 20 1 11.8683 -2.1841 2.5224 21 6 13.6948 -2.2397 3.6256 22 7 14.3053 -1.9039 4.7410 23 14 14.6271 -3.1528 2.2891 24 1 16.0279 -3.3776 2.7279 25 1 13.9723 -4.4611 2.0342 26 1 14.6225 -2.3458 1.0426 27 7 9.8408 -0.3131 2.8986 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7564 1.9281 0.9337 34 1 1.6011 1.9830 -0.8387 35 1 4.8892 0.8025 -1.5238 36 1 3.8725 3.3218 0.8774 37 1 5.1514 2.8933 -0.2841 38 1 3.5733 3.2679 -2.1597 39 1 2.2945 3.6964 -0.9982 40 1 3.6764 5.5811 -0.1707 41 1 4.9556 5.1532 -1.3320 42 1 3.3764 5.7283 -1.9188 43 1 3.8526 -0.3809 0.9736 44 1 3.8555 1.0927 1.9718 45 1 6.0620 1.1319 0.1676 46 1 8.1636 0.6613 1.0683 47 1 7.0161 -1.0762 4.2846 48 1 9.0926 -1.8363 5.6977 49 1 11.6161 -1.7692 5.4321 50 1 12.0998 -0.2168 4.7080 51 1 13.8212 -1.4294 5.4349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173375455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:30 Heat of formation + Delta-G solvation = -46.099880 kcal Electronic energy + Delta-G solvation = -29247.365457 eV Core-core repulsion = 25182.008388 eV Total energy + Delta-G solvation = -4065.357070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.32486 -41.23807 -39.93874 -36.46367 -35.58883 -35.40564 -35.26531 -34.96209 -32.67413 -31.14802 -30.94637 -28.32262 -27.47632 -27.08273 -25.06806 -23.28592 -22.80456 -22.44852 -22.14333 -21.38523 -20.93302 -19.46676 -19.21792 -18.41303 -17.51191 -17.13938 -16.85459 -16.44101 -16.20205 -15.92555 -15.82944 -15.60230 -15.45844 -15.17664 -15.00408 -14.73364 -14.47098 -14.18737 -13.97671 -13.88033 -13.69985 -13.63637 -13.26187 -13.19683 -12.94056 -12.67784 -12.61428 -12.51157 -12.14825 -12.02531 -11.95380 -11.89940 -11.70799 -11.53639 -11.47935 -11.22690 -11.16272 -11.00667 -10.77810 -10.69042 -10.27190 -9.81092 -9.15325 -8.76523 -6.55273 0.97738 1.04848 1.51314 1.57744 1.63068 1.79154 2.00338 2.34439 2.48972 3.01300 3.05645 3.24580 3.54296 3.69422 3.83762 3.86527 4.14446 4.18183 4.29295 4.30660 4.35171 4.51212 4.56742 4.61027 4.63306 4.70569 4.76382 4.80081 4.80499 4.85916 4.91723 4.97855 5.01737 5.04494 5.06453 5.08839 5.25769 5.29034 5.33312 5.40922 5.44041 5.50340 5.52740 5.54785 5.75237 5.84426 5.95096 6.27526 6.42083 6.63812 6.76181 7.05862 7.20425 7.36214 8.58785 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.001958 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.660528 B =14299.272398 C =14750.345337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.103 4.103 4 C 0.137 3.863 5 O -0.559 6.559 6 C -0.144 4.144 7 C -0.118 4.118 8 C -0.155 4.155 9 C 0.114 3.886 10 N -0.719 5.719 11 C 0.713 3.287 12 O -0.600 6.600 13 N -0.635 5.635 14 C 0.287 3.713 15 C -0.290 4.290 16 C 0.055 3.945 17 N -0.345 5.345 18 C 0.260 3.740 19 C -0.620 4.620 20 H 0.045 0.955 21 C -0.020 4.020 22 N -0.923 5.923 23 Si 1.120 2.880 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.275 1.275 27 N -0.346 5.346 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.383 0.617 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.410 0.590 46 H 0.421 0.579 47 H 0.168 0.832 48 H 0.201 0.799 49 H 0.054 0.946 50 H 0.017 0.983 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.786 10.614 -12.354 31.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.141 4.141 4 C 0.096 3.904 5 O -0.366 6.366 6 C -0.182 4.182 7 C -0.156 4.156 8 C -0.212 4.212 9 C -0.010 4.010 10 N -0.377 5.377 11 C 0.412 3.588 12 O -0.478 6.478 13 N -0.287 5.287 14 C 0.031 3.969 15 C -0.321 4.321 16 C -0.093 4.093 17 N -0.126 5.126 18 C 0.140 3.860 19 C -0.658 4.658 20 H 0.064 0.936 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.941 3.059 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.200 1.200 27 N -0.177 5.177 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.248 0.752 46 H 0.259 0.741 47 H 0.186 0.814 48 H 0.217 0.783 49 H 0.071 0.929 50 H 0.035 0.965 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.308 9.791 -12.497 29.876 hybrid contribution -0.897 0.879 0.561 1.376 sum -26.206 10.670 -11.936 30.709 Atomic orbital electron populations 1.21767 0.95248 1.01785 1.02076 1.21535 0.96300 0.96735 1.01850 1.21660 0.90965 0.97795 1.03671 1.21414 0.95873 0.90905 0.82208 1.86593 1.29321 1.82505 1.38166 1.22290 1.00884 0.94307 1.00675 1.21489 1.00369 0.94853 0.98853 1.21798 1.01159 0.96502 1.01769 1.22132 0.77040 1.01598 1.00248 1.44789 1.06750 1.63092 1.23050 1.15751 0.80083 0.79390 0.83547 1.90847 1.72332 1.50550 1.34022 1.41356 1.04038 1.60902 1.22394 1.19079 0.89162 0.97833 0.90796 1.21703 1.00628 1.13036 0.96757 1.23165 0.85384 1.00424 1.00340 1.48546 1.07201 1.42990 1.13901 1.19416 0.74333 0.96176 0.96061 1.22280 0.99012 1.40779 1.03772 0.93641 1.27285 0.95823 0.96861 1.02006 1.70952 1.39825 1.38112 1.07021 0.82875 0.75113 0.75622 0.72305 1.20040 1.19685 1.19999 1.77258 1.10370 1.24085 1.05991 0.92282 0.92397 0.92918 0.92175 0.92585 0.89508 0.89763 0.76799 0.90725 0.90913 0.91704 0.91330 0.92870 0.92908 0.92490 0.91545 0.90773 0.75229 0.74129 0.81433 0.78254 0.92872 0.96541 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.61 5.32 30.60 0.16 -1.45 16 3 C -0.10 -1.07 3.96 30.59 0.12 -0.95 16 4 C 0.14 1.46 0.50 -10.79 -0.01 1.46 16 5 O -0.56 -6.48 11.81 -148.98 -1.76 -8.24 16 6 C -0.14 -1.29 4.20 30.60 0.13 -1.16 16 7 C -0.12 -1.05 5.34 30.59 0.16 -0.89 16 8 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16 9 C 0.11 1.75 4.37 86.38 0.38 2.13 16 10 N -0.72 -11.71 5.04 -478.54 -2.41 -14.12 16 11 C 0.71 19.24 8.53 179.05 1.53 20.77 16 12 O -0.60 -20.77 13.46 -3.99 -0.05 -20.82 16 13 N -0.63 -18.48 5.46 -321.22 -1.75 -20.24 16 14 C 0.29 11.41 8.11 133.31 1.08 12.49 16 15 C -0.29 -11.43 9.61 22.11 0.21 -11.22 16 16 C 0.05 2.18 11.44 83.52 0.96 3.14 16 17 N -0.34 -16.26 3.67 -351.85 -1.29 -17.55 16 18 C 0.26 13.39 5.57 85.63 0.48 13.87 16 19 C -0.62 -35.34 9.23 25.60 0.24 -35.10 16 20 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 21 C -0.02 -1.13 5.46 84.65 0.46 -0.67 16 22 N -0.92 -54.00 13.65 21.45 0.29 -53.70 16 23 Si 1.12 49.66 29.90 68.60 2.05 51.71 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 N -0.35 -16.10 12.42 -54.43 -0.68 -16.77 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.92 7.57 -2.39 -0.02 0.90 16 32 H 0.06 0.80 6.77 -2.39 -0.02 0.78 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.83 6.42 -2.39 -0.02 0.81 16 35 H 0.38 2.50 7.93 -74.06 -0.59 1.91 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.56 6.98 -2.39 -0.02 0.54 16 38 H 0.06 0.65 7.82 -2.39 -0.02 0.63 16 39 H 0.07 0.58 6.38 -2.38 -0.02 0.57 16 40 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.07 1.24 6.68 -2.39 -0.02 1.22 16 44 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 45 H 0.41 3.91 6.47 -92.71 -0.60 3.31 16 46 H 0.42 9.49 8.84 -92.71 -0.82 8.67 16 47 H 0.17 6.45 5.91 -2.91 -0.02 6.43 16 48 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 49 H 0.05 2.63 7.94 -2.38 -0.02 2.61 16 50 H 0.02 0.90 8.00 -2.39 -0.02 0.89 16 51 H 0.26 15.08 7.22 -92.70 -0.67 14.41 16 Total: -1.00 -74.11 408.23 0.78 -73.33 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.95 Total: 25.65 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 7.33 Total: 0.78 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.84 Total: -122.39 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -1.81 Total: -29.06 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Total: -74.11 0.78 -73.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173375455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.226 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds