Wall clock time and date at job start Tue Mar 31 2020 21:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46998 * 2 1 4 4 H 1.09003 * 109.46838 * 304.99743 * 3 2 1 5 5 C 1.53001 * 109.46987 * 184.99736 * 3 2 1 6 6 C 1.52996 * 109.47012 * 174.99773 * 5 3 2 7 7 H 1.08998 * 109.47134 * 55.00435 * 6 5 3 8 8 C 1.52999 * 109.47324 * 295.00260 * 6 5 3 9 9 C 1.52999 * 109.46961 * 175.00192 * 6 5 3 10 10 O 1.42903 * 109.47256 * 185.00371 * 9 6 5 11 11 N 1.46495 * 109.47235 * 64.99746 * 3 2 1 12 12 C 1.34783 * 120.00156 * 274.99818 * 11 3 2 13 13 O 1.21594 * 119.99811 * 0.02562 * 12 11 3 14 14 N 1.34779 * 120.00026 * 179.97438 * 12 11 3 15 15 C 1.40191 * 119.99584 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97741 * 359.71922 * 15 14 12 17 17 C 1.35243 * 107.87020 * 179.82766 * 16 15 14 18 18 C 1.50694 * 126.07040 * 180.13609 * 17 16 15 19 19 N 1.34973 * 107.85471 * 0.42753 * 17 16 15 20 20 C 1.46500 * 125.97072 * 179.70589 * 19 17 16 21 21 C 1.50700 * 109.47191 * 269.99841 * 20 19 17 22 22 H 1.07999 * 119.99792 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99901 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99898 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99883 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46762 * 90.00164 * 25 23 21 27 27 H 1.48502 * 109.46862 * 210.00147 * 25 23 21 28 28 H 1.48496 * 109.47173 * 330.00265 * 25 23 21 29 29 N 1.31213 * 125.96858 * 180.02562 * 15 14 12 30 30 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47062 * 300.00215 * 1 2 3 32 32 H 1.09004 * 109.46506 * 60.00205 * 1 2 3 33 33 H 1.08997 * 109.47062 * 239.99785 * 2 1 3 34 34 H 1.09002 * 109.47045 * 119.99266 * 2 1 3 35 35 H 1.08998 * 109.46874 * 54.99897 * 5 3 2 36 36 H 1.08997 * 109.47235 * 294.99714 * 5 3 2 37 37 H 1.08996 * 109.47473 * 180.02562 * 8 6 5 38 38 H 1.09001 * 109.46943 * 299.99678 * 8 6 5 39 39 H 1.08999 * 109.47294 * 59.99941 * 8 6 5 40 40 H 1.08997 * 109.47286 * 64.99932 * 9 6 5 41 41 H 1.09008 * 109.47201 * 304.99712 * 9 6 5 42 42 H 0.96700 * 114.00311 * 180.02562 * 10 9 6 43 43 H 0.97006 * 120.00359 * 94.99810 * 11 3 2 44 44 H 0.96998 * 120.00174 * 0.02562 * 14 12 11 45 45 H 1.07999 * 126.06412 * 359.97438 * 16 15 14 46 46 H 1.09004 * 109.47370 * 270.34058 * 18 17 16 47 47 H 1.09001 * 109.47197 * 30.34590 * 18 17 16 48 48 H 1.09008 * 109.46958 * 150.34666 * 18 17 16 49 49 H 1.08998 * 109.47326 * 30.00581 * 20 19 17 50 50 H 1.09006 * 109.46707 * 149.99890 * 20 19 17 51 51 H 0.96996 * 119.99973 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4444 -0.1257 6 6 4.0645 2.8850 -0.2511 7 1 3.6971 3.4716 0.5909 8 6 3.5499 3.4913 -1.5582 9 6 5.5944 2.8959 -0.2514 10 8 6.0612 4.2466 -0.2511 11 7 1.6524 2.0975 1.2517 12 6 0.4351 2.6645 1.3668 13 8 -0.3416 2.6319 0.4318 14 7 0.0783 3.2666 2.5186 15 6 -1.1881 3.8559 2.6385 16 6 -2.1764 3.8969 1.6420 17 6 -3.2491 4.5469 2.1478 18 6 -4.5432 4.8194 1.4255 19 7 -2.9522 4.9137 3.4124 20 6 -3.8327 5.6477 4.3246 21 6 -3.6077 7.1284 4.1572 22 1 -2.8817 7.4868 3.4425 23 6 -4.3286 8.0255 4.9166 24 7 -4.1326 9.3176 4.7702 25 14 -5.5848 7.4054 6.1523 26 1 -4.9263 7.2016 7.4676 27 1 -6.6747 8.4042 6.2938 28 1 -6.1520 6.1176 5.6779 29 7 -1.6550 4.4704 3.6997 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.8571 0.8800 -1.0112 36 1 4.0029 0.9837 0.7597 37 1 3.9062 4.5175 -1.6478 38 1 3.9173 2.9047 -2.4002 39 1 2.4599 3.4835 -1.5580 40 1 5.9613 2.3850 -1.1416 41 1 5.9616 2.3845 0.6385 42 1 7.0246 4.3299 -0.2516 43 1 2.2719 2.1232 1.9978 44 1 0.6977 3.2923 3.2646 45 1 -2.0953 3.4809 0.6486 46 1 -4.4742 5.7741 0.9040 47 1 -4.7312 4.0241 0.7042 48 1 -5.3604 4.8573 2.1459 49 1 -4.8717 5.4100 4.0966 50 1 -3.6115 5.3605 5.3526 51 1 -4.6400 9.9487 5.3041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348208564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:41 Heat of formation + Delta-G solvation = -14.470662 kcal Electronic energy + Delta-G solvation = -29873.232512 eV Core-core repulsion = 25809.246988 eV Total energy + Delta-G solvation = -4063.985524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86957 -39.97409 -38.23475 -36.68478 -34.76036 -33.90313 -33.35456 -32.36886 -31.27293 -30.97161 -28.66354 -27.03392 -26.78662 -26.34113 -23.98651 -22.94384 -21.91380 -20.85946 -20.26315 -19.87924 -19.55727 -17.90176 -17.52368 -17.08941 -16.64199 -15.98900 -15.85657 -15.50982 -14.97916 -14.79946 -14.50661 -14.33954 -14.05739 -13.89190 -13.53006 -13.35506 -13.23439 -13.05906 -12.62517 -12.58480 -12.37104 -12.30340 -12.17202 -11.86580 -11.78701 -11.55045 -11.54594 -11.23204 -11.18503 -11.06012 -10.93396 -10.76487 -10.66335 -10.51273 -10.32781 -9.98341 -9.90692 -9.64045 -9.53628 -9.09354 -8.75928 -7.92592 -7.38459 -6.23777 -4.26526 2.40829 2.64037 3.12039 3.17174 3.23074 3.24656 3.55775 3.74913 3.85080 4.23401 4.29581 4.44965 4.50168 4.64792 4.86928 4.91243 4.99788 5.04824 5.10779 5.17058 5.30875 5.35483 5.39544 5.46281 5.51201 5.64592 5.68173 5.75008 5.85946 5.87510 5.91376 6.01063 6.06911 6.08523 6.15669 6.23029 6.36962 6.40091 6.47818 6.52243 6.54124 6.65624 6.83656 7.10821 7.27511 7.31998 7.52222 7.91169 7.97033 8.34752 8.65201 8.66039 8.82402 9.31578 10.88864 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.002396 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.831979 B =11682.375846 C =12764.216166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.097 0.903 5 C -0.122 4.122 6 C -0.093 4.093 7 H 0.081 0.919 8 C -0.147 4.147 9 C 0.080 3.920 10 O -0.571 6.571 11 N -0.738 5.738 12 C 0.714 3.286 13 O -0.560 6.560 14 N -0.646 5.646 15 C 0.288 3.712 16 C -0.284 4.284 17 C 0.093 3.907 18 C -0.084 4.084 19 N -0.319 5.319 20 C 0.232 3.768 21 C -0.539 4.539 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.887 5.887 25 Si 0.874 3.126 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 N -0.323 5.323 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.378 0.622 43 H 0.394 0.606 44 H 0.405 0.595 45 H 0.163 0.837 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.050 0.950 50 H 0.044 0.956 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 -19.196 -10.551 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.114 0.886 5 C -0.160 4.160 6 C -0.112 4.112 7 H 0.099 0.901 8 C -0.204 4.204 9 C 0.002 3.998 10 O -0.376 6.376 11 N -0.394 5.394 12 C 0.413 3.587 13 O -0.435 6.435 14 N -0.296 5.296 15 C 0.034 3.966 16 C -0.316 4.316 17 C -0.038 4.038 18 C -0.143 4.143 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.578 4.578 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.524 5.524 25 Si 0.700 3.300 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.189 1.189 29 N -0.153 5.153 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.224 0.776 43 H 0.228 0.772 44 H 0.240 0.760 45 H 0.180 0.820 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.500 -18.501 -10.096 26.163 hybrid contribution 0.597 -0.402 0.845 1.110 sum 16.098 -18.903 -9.251 26.496 Atomic orbital electron populations 1.21794 0.94461 1.00317 1.03653 1.21985 0.97550 0.95925 1.01820 1.20955 0.93356 0.93042 0.86767 0.88558 1.21890 0.94661 0.96349 1.03060 1.21126 0.93282 0.96399 1.00361 0.90061 1.21822 1.01420 1.01340 0.95797 1.22246 0.94918 0.83223 0.99392 1.86522 1.26715 1.26714 1.97673 1.45122 1.15563 1.61381 1.17354 1.15589 0.82368 0.78241 0.82485 1.90877 1.50892 1.63454 1.38298 1.41439 1.14489 1.58016 1.15608 1.18651 0.86061 0.97694 0.94184 1.21245 0.92834 1.14959 1.02514 1.21051 0.97898 0.98162 0.86646 1.20343 0.91915 1.02635 0.99380 1.48467 1.09685 1.41334 1.10636 1.19973 0.87470 0.92408 0.88827 1.21192 1.24562 0.87453 1.24551 0.90111 1.24813 0.96590 0.94668 0.96497 1.69874 1.41077 1.01098 1.40387 0.86891 0.81590 0.79204 0.82323 1.19667 1.20567 1.18884 1.77250 0.95293 1.21353 1.21436 0.93985 0.92021 0.92018 0.91365 0.92115 0.90007 0.91171 0.91989 0.93009 0.92020 0.93775 0.93854 0.77571 0.77205 0.76039 0.81980 0.90139 0.90704 0.91205 0.93285 0.93758 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.51 37.16 0.32 -1.27 16 2 C -0.13 -1.08 5.61 -26.73 -0.15 -1.23 16 3 C 0.16 1.36 2.12 -67.93 -0.14 1.21 16 4 H 0.10 1.01 5.78 -51.93 -0.30 0.71 16 5 C -0.12 -0.70 4.22 -26.73 -0.11 -0.81 16 6 C -0.09 -0.71 2.57 -90.62 -0.23 -0.94 16 7 H 0.08 0.76 7.62 -51.93 -0.40 0.36 16 8 C -0.15 -1.30 8.85 37.16 0.33 -0.97 16 9 C 0.08 0.52 6.43 37.16 0.24 0.75 16 10 O -0.57 -4.65 13.19 -35.23 -0.46 -5.11 16 11 N -0.74 -7.00 4.40 -58.67 -0.26 -7.26 16 12 C 0.71 10.04 7.10 -86.91 -0.62 9.42 16 13 O -0.56 -9.46 10.60 5.28 0.06 -9.40 16 14 N -0.65 -9.93 5.46 -15.50 -0.08 -10.01 16 15 C 0.29 5.83 8.11 -154.36 -1.25 4.58 16 16 C -0.28 -5.83 9.52 -39.83 -0.38 -6.20 16 17 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 18 C -0.08 -1.43 10.11 36.00 0.36 -1.07 16 19 N -0.32 -7.50 3.59 -58.33 -0.21 -7.71 16 20 C 0.23 5.67 5.06 -5.19 -0.03 5.64 16 21 C -0.54 -15.29 9.94 -34.44 -0.34 -15.63 16 22 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 23 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 24 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 25 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 29 N -0.32 -7.42 12.59 31.44 0.40 -7.02 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.83 5.64 -51.93 -0.29 0.54 16 32 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.62 6.46 -51.93 -0.34 0.29 16 40 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 42 H 0.38 1.37 9.12 45.56 0.42 1.78 16 43 H 0.39 2.76 8.62 -40.82 -0.35 2.41 16 44 H 0.41 5.05 8.84 -40.82 -0.36 4.69 16 45 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.07 1.15 7.07 -51.92 -0.37 0.78 16 49 H 0.05 1.11 6.10 -51.93 -0.32 0.80 16 50 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 51 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -35.34 404.74 -8.68 -44.02 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.64 Total: 9.58 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.68 Total: -3.03 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.62 Total: -57.84 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.41 Total: -14.52 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.34 -8.68 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.550 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds