Wall clock time and date at job start Tue Mar 31 2020 21:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46998 * 2 1 4 4 H 1.09003 * 109.46838 * 304.99743 * 3 2 1 5 5 C 1.53001 * 109.46987 * 184.99736 * 3 2 1 6 6 C 1.52996 * 109.47012 * 174.99773 * 5 3 2 7 7 H 1.08998 * 109.47134 * 55.00435 * 6 5 3 8 8 C 1.52999 * 109.47324 * 295.00260 * 6 5 3 9 9 C 1.52999 * 109.46961 * 175.00192 * 6 5 3 10 10 O 1.42903 * 109.47256 * 185.00371 * 9 6 5 11 11 N 1.46495 * 109.47235 * 64.99746 * 3 2 1 12 12 C 1.34783 * 120.00156 * 274.99818 * 11 3 2 13 13 O 1.21594 * 119.99811 * 0.02562 * 12 11 3 14 14 N 1.34779 * 120.00026 * 179.97438 * 12 11 3 15 15 C 1.40191 * 119.99584 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97741 * 359.71922 * 15 14 12 17 17 C 1.35243 * 107.87020 * 179.82766 * 16 15 14 18 18 C 1.50694 * 126.07040 * 180.13609 * 17 16 15 19 19 N 1.34973 * 107.85471 * 0.42753 * 17 16 15 20 20 C 1.46500 * 125.97072 * 179.70589 * 19 17 16 21 21 C 1.50700 * 109.47191 * 269.99841 * 20 19 17 22 22 H 1.07999 * 119.99792 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99901 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99898 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99883 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46762 * 90.00164 * 25 23 21 27 27 H 1.48502 * 109.46862 * 210.00147 * 25 23 21 28 28 H 1.48496 * 109.47173 * 330.00265 * 25 23 21 29 29 N 1.31213 * 125.96858 * 180.02562 * 15 14 12 30 30 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47062 * 300.00215 * 1 2 3 32 32 H 1.09004 * 109.46506 * 60.00205 * 1 2 3 33 33 H 1.08997 * 109.47062 * 239.99785 * 2 1 3 34 34 H 1.09002 * 109.47045 * 119.99266 * 2 1 3 35 35 H 1.08998 * 109.46874 * 54.99897 * 5 3 2 36 36 H 1.08997 * 109.47235 * 294.99714 * 5 3 2 37 37 H 1.08996 * 109.47473 * 180.02562 * 8 6 5 38 38 H 1.09001 * 109.46943 * 299.99678 * 8 6 5 39 39 H 1.08999 * 109.47294 * 59.99941 * 8 6 5 40 40 H 1.08997 * 109.47286 * 64.99932 * 9 6 5 41 41 H 1.09008 * 109.47201 * 304.99712 * 9 6 5 42 42 H 0.96700 * 114.00311 * 180.02562 * 10 9 6 43 43 H 0.97006 * 120.00359 * 94.99810 * 11 3 2 44 44 H 0.96998 * 120.00174 * 0.02562 * 14 12 11 45 45 H 1.07999 * 126.06412 * 359.97438 * 16 15 14 46 46 H 1.09004 * 109.47370 * 270.34058 * 18 17 16 47 47 H 1.09001 * 109.47197 * 30.34590 * 18 17 16 48 48 H 1.09008 * 109.46958 * 150.34666 * 18 17 16 49 49 H 1.08998 * 109.47326 * 30.00581 * 20 19 17 50 50 H 1.09006 * 109.46707 * 149.99890 * 20 19 17 51 51 H 0.96996 * 119.99973 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4444 -0.1257 6 6 4.0645 2.8850 -0.2511 7 1 3.6971 3.4716 0.5909 8 6 3.5499 3.4913 -1.5582 9 6 5.5944 2.8959 -0.2514 10 8 6.0612 4.2466 -0.2511 11 7 1.6524 2.0975 1.2517 12 6 0.4351 2.6645 1.3668 13 8 -0.3416 2.6319 0.4318 14 7 0.0783 3.2666 2.5186 15 6 -1.1881 3.8559 2.6385 16 6 -2.1764 3.8969 1.6420 17 6 -3.2491 4.5469 2.1478 18 6 -4.5432 4.8194 1.4255 19 7 -2.9522 4.9137 3.4124 20 6 -3.8327 5.6477 4.3246 21 6 -3.6077 7.1284 4.1572 22 1 -2.8817 7.4868 3.4425 23 6 -4.3286 8.0255 4.9166 24 7 -4.1326 9.3176 4.7702 25 14 -5.5848 7.4054 6.1523 26 1 -4.9263 7.2016 7.4676 27 1 -6.6747 8.4042 6.2938 28 1 -6.1520 6.1176 5.6779 29 7 -1.6550 4.4704 3.6997 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.8571 0.8800 -1.0112 36 1 4.0029 0.9837 0.7597 37 1 3.9062 4.5175 -1.6478 38 1 3.9173 2.9047 -2.4002 39 1 2.4599 3.4835 -1.5580 40 1 5.9613 2.3850 -1.1416 41 1 5.9616 2.3845 0.6385 42 1 7.0246 4.3299 -0.2516 43 1 2.2719 2.1232 1.9978 44 1 0.6977 3.2923 3.2646 45 1 -2.0953 3.4809 0.6486 46 1 -4.4742 5.7741 0.9040 47 1 -4.7312 4.0241 0.7042 48 1 -5.3604 4.8573 2.1459 49 1 -4.8717 5.4100 4.0966 50 1 -3.6115 5.3605 5.3526 51 1 -4.6400 9.9487 5.3041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348208564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:40 Heat of formation + Delta-G solvation = -41.285258 kcal Electronic energy + Delta-G solvation = -29874.395281 eV Core-core repulsion = 25809.246988 eV Total energy + Delta-G solvation = -4065.148292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33183 -41.18302 -38.95831 -37.43858 -36.17385 -35.24609 -34.62904 -33.63526 -32.77846 -32.54860 -29.50534 -28.76183 -27.86859 -27.43734 -24.87752 -24.46636 -23.29214 -21.66072 -21.32026 -21.09107 -20.82683 -19.23257 -19.06011 -18.19193 -17.79230 -17.29419 -16.97127 -16.53104 -16.29942 -16.17700 -15.62268 -15.53959 -15.18384 -14.85425 -14.81785 -14.53942 -14.37973 -14.11206 -13.85257 -13.77297 -13.73611 -13.58231 -13.29554 -13.19178 -12.96658 -12.84107 -12.56653 -12.50501 -12.31784 -12.21996 -11.83689 -11.82150 -11.74701 -11.65151 -11.53701 -11.34364 -11.27895 -10.99282 -10.89753 -10.81412 -10.01200 -9.55460 -9.01112 -8.40318 -6.51397 1.00865 1.16162 1.35655 1.37448 1.47294 1.70971 2.10582 2.26715 2.45285 2.92141 3.18483 3.27673 3.84058 3.88229 3.95015 4.05307 4.12685 4.27039 4.30497 4.37321 4.40855 4.52350 4.54051 4.63722 4.71491 4.75902 4.76338 4.79932 4.83982 4.86498 4.91384 5.00266 5.03251 5.09094 5.11822 5.14475 5.15783 5.23262 5.25201 5.27662 5.40171 5.44091 5.56751 5.68920 5.90482 5.92618 6.04204 6.39066 6.52428 6.77145 6.96403 7.12321 7.15390 7.53098 8.76590 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.002396 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.831979 B =11682.375846 C =12764.216166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.161 3.839 4 H 0.072 0.928 5 C -0.109 4.109 6 C -0.094 4.094 7 H 0.059 0.941 8 C -0.144 4.144 9 C 0.079 3.921 10 O -0.601 6.601 11 N -0.717 5.717 12 C 0.710 3.290 13 O -0.589 6.589 14 N -0.640 5.640 15 C 0.296 3.704 16 C -0.295 4.295 17 C 0.087 3.913 18 C -0.083 4.083 19 N -0.345 5.345 20 C 0.242 3.758 21 C -0.550 4.550 22 H 0.022 0.978 23 C 0.020 3.980 24 N -0.939 5.939 25 Si 0.952 3.048 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.233 1.233 29 N -0.360 5.360 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.395 0.605 43 H 0.410 0.590 44 H 0.418 0.582 45 H 0.167 0.833 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.388 -22.322 -10.259 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.057 3.943 4 H 0.091 0.909 5 C -0.146 4.146 6 C -0.113 4.113 7 H 0.077 0.923 8 C -0.202 4.202 9 C 0.002 3.998 10 O -0.409 6.409 11 N -0.373 5.373 12 C 0.410 3.590 13 O -0.466 6.466 14 N -0.292 5.292 15 C 0.041 3.959 16 C -0.326 4.326 17 C -0.042 4.042 18 C -0.141 4.141 19 N -0.127 5.127 20 C 0.122 3.878 21 C -0.588 4.588 22 H 0.040 0.960 23 C -0.179 4.179 24 N -0.577 5.577 25 Si 0.773 3.227 26 H -0.190 1.190 27 H -0.199 1.199 28 H -0.156 1.156 29 N -0.191 5.191 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.244 0.756 43 H 0.246 0.754 44 H 0.255 0.745 45 H 0.184 0.816 46 H 0.094 0.906 47 H 0.125 0.875 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.066 0.934 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.223 -21.670 -9.822 28.796 hybrid contribution 0.566 0.584 0.593 1.006 sum 16.788 -21.086 -9.229 28.489 Atomic orbital electron populations 1.21733 0.96886 1.00115 1.01257 1.21956 0.95168 0.95696 1.03729 1.21107 0.95276 0.92878 0.85074 0.90942 1.21831 0.92127 0.95394 1.05275 1.21129 0.94573 0.97173 0.98418 0.92280 1.21787 1.00142 1.00598 0.97628 1.22314 0.93683 0.82789 1.01041 1.86477 1.28606 1.28005 1.97805 1.45047 1.13929 1.59869 1.18483 1.15788 0.83420 0.78182 0.81602 1.90850 1.52187 1.64486 1.39107 1.41484 1.13168 1.57790 1.16777 1.18960 0.87465 0.96197 0.93300 1.21418 0.93076 1.15331 1.02742 1.21743 0.99428 0.97093 0.85977 1.20489 0.90187 1.03591 0.99859 1.48395 1.10122 1.42671 1.11524 1.19762 0.88915 0.89694 0.89418 1.21264 1.23599 0.90271 1.23679 0.95972 1.25855 0.98933 0.94494 0.98633 1.70037 1.42764 1.02934 1.41980 0.85662 0.78256 0.79914 0.78865 1.19012 1.19889 1.15638 1.77157 0.95766 1.23175 1.22990 0.93034 0.94834 0.93977 0.88998 0.90520 0.87772 0.88715 0.94172 0.91301 0.93941 0.92150 0.92012 0.75556 0.75387 0.74478 0.81575 0.90550 0.87452 0.90409 0.90853 0.93423 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 71.98 0.61 -2.40 16 2 C -0.13 -1.70 5.61 30.60 0.17 -1.53 16 3 C 0.16 2.39 2.12 44.99 0.10 2.48 16 4 H 0.07 1.49 5.78 -2.39 -0.01 1.48 16 5 C -0.11 -0.90 4.22 30.59 0.13 -0.77 16 6 C -0.09 -1.28 2.57 -10.80 -0.03 -1.30 16 7 H 0.06 1.06 7.62 -2.39 -0.02 1.04 16 8 C -0.14 -2.53 8.85 71.98 0.64 -1.89 16 9 C 0.08 0.82 6.43 71.98 0.46 1.28 16 10 O -0.60 -9.07 13.19 -148.98 -1.97 -11.03 16 11 N -0.72 -12.80 4.40 -457.80 -2.02 -14.82 16 12 C 0.71 20.05 7.10 179.05 1.27 21.32 16 13 O -0.59 -20.35 10.60 -4.01 -0.04 -20.40 16 14 N -0.64 -19.86 5.46 -321.22 -1.75 -21.62 16 15 C 0.30 12.25 8.11 133.31 1.08 13.34 16 16 C -0.29 -12.30 9.52 22.11 0.21 -12.09 16 17 C 0.09 3.70 6.92 41.38 0.29 3.99 16 18 C -0.08 -2.77 10.11 71.23 0.72 -2.05 16 19 N -0.34 -16.47 3.59 -338.44 -1.22 -17.69 16 20 C 0.24 11.79 5.06 85.63 0.43 12.23 16 21 C -0.55 -32.24 9.94 25.60 0.25 -31.99 16 22 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 23 C 0.02 1.16 5.47 84.66 0.46 1.63 16 24 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 25 Si 0.95 41.44 27.47 68.60 1.88 43.32 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.23 -8.96 6.54 99.48 0.65 -8.31 16 29 N -0.36 -16.96 12.59 -54.44 -0.69 -17.64 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.03 0.89 5.64 -2.39 -0.01 0.87 16 32 H 0.04 1.03 7.84 -2.38 -0.02 1.01 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.04 0.86 7.82 -2.39 -0.02 0.84 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.04 0.89 6.46 -2.39 -0.02 0.87 16 40 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.06 0.42 8.14 -2.38 -0.02 0.41 16 42 H 0.39 2.32 9.12 -74.06 -0.68 1.65 16 43 H 0.41 4.94 8.62 -92.70 -0.80 4.14 16 44 H 0.42 10.37 8.84 -92.71 -0.82 9.55 16 45 H 0.17 6.77 5.91 -2.91 -0.02 6.75 16 46 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.08 2.44 7.07 -2.38 -0.02 2.43 16 49 H 0.07 3.19 6.10 -2.39 -0.01 3.18 16 50 H 0.05 2.27 7.57 -2.38 -0.02 2.26 16 51 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -82.11 404.74 -0.08 -82.18 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.38 Total: 33.20 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.80 Total: 2.25 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -5.37 Total: -129.52 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -2.01 Total: -31.43 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Total: -82.11 -0.08 -82.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.896 kcal (2) G-P(sol) polarization free energy of solvation -82.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds