Wall clock time and date at job start Tue Mar 31 2020 21:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47575 * 2 1 4 4 H 1.08999 * 109.46528 * 55.00089 * 3 2 1 5 5 C 1.52997 * 109.46859 * 295.00388 * 3 2 1 6 6 C 1.52997 * 109.47190 * 174.99853 * 3 2 1 7 7 C 1.52999 * 109.47287 * 294.01042 * 6 3 2 8 8 H 1.09002 * 109.46801 * 56.97883 * 7 6 3 9 9 C 1.53004 * 109.47008 * 176.97540 * 7 6 3 10 10 O 1.42896 * 109.46849 * 55.00230 * 9 7 6 11 11 N 1.46497 * 109.47119 * 296.97888 * 7 6 3 12 12 C 1.34777 * 120.00059 * 155.00490 * 11 7 6 13 13 O 1.21593 * 119.99818 * 359.97438 * 12 11 7 14 14 N 1.34771 * 120.00166 * 179.97438 * 12 11 7 15 15 C 1.40194 * 120.00098 * 179.71991 * 14 12 11 16 16 C 1.40400 * 125.97519 * 359.97438 * 15 14 12 17 17 C 1.35238 * 107.86899 * 179.88983 * 16 15 14 18 18 C 1.50702 * 126.06829 * 180.13802 * 17 16 15 19 19 N 1.34958 * 107.86194 * 0.37017 * 17 16 15 20 20 C 1.46499 * 125.97975 * 179.73281 * 19 17 16 21 21 C 1.50709 * 109.46792 * 270.01659 * 20 19 17 22 22 H 1.07989 * 120.00060 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99611 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00033 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99650 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46913 * 120.00316 * 25 23 21 28 28 H 1.48496 * 109.47079 * 240.00057 * 25 23 21 29 29 N 1.31216 * 125.97406 * 180.30328 * 15 14 12 30 30 H 1.09000 * 109.46668 * 299.99924 * 1 2 3 31 31 H 1.09002 * 109.47117 * 59.99782 * 1 2 3 32 32 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47192 * 240.00065 * 2 1 3 34 34 H 1.08995 * 109.47368 * 120.00544 * 2 1 3 35 35 H 1.08999 * 109.46948 * 305.79311 * 5 3 2 36 36 H 1.08998 * 109.47530 * 65.79998 * 5 3 2 37 37 H 1.09011 * 109.46434 * 185.79929 * 5 3 2 38 38 H 1.09004 * 109.46930 * 174.01264 * 6 3 2 39 39 H 1.08998 * 109.47183 * 54.01383 * 6 3 2 40 40 H 1.09003 * 109.46664 * 174.99829 * 9 7 6 41 41 H 1.08990 * 109.47318 * 295.00033 * 9 7 6 42 42 H 0.96699 * 114.00193 * 179.97438 * 10 9 7 43 43 H 0.96996 * 120.00330 * 334.99808 * 11 7 6 44 44 H 0.97006 * 120.00240 * 359.97438 * 14 12 11 45 45 H 1.07999 * 126.06228 * 0.02562 * 16 15 14 46 46 H 1.08999 * 109.47406 * 270.27147 * 18 17 16 47 47 H 1.09002 * 109.47521 * 30.27728 * 18 17 16 48 48 H 1.09007 * 109.47027 * 150.27568 * 18 17 16 49 49 H 1.09002 * 109.47035 * 30.01348 * 20 19 17 50 50 H 1.08999 * 109.47248 * 150.02007 * 20 19 17 51 51 H 0.97003 * 119.99663 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 6 3.9642 0.8964 1.4974 8 1 3.5465 -0.1022 1.6253 9 6 5.4896 0.8275 1.5947 10 8 6.0434 2.1140 1.3117 11 7 3.4473 1.7799 2.5454 12 6 3.2175 1.2959 3.7821 13 8 3.4387 0.1258 4.0278 14 7 2.7425 2.1088 4.7464 15 6 2.4979 1.6040 6.0312 16 6 2.7015 0.2793 6.4494 17 6 2.3510 0.1971 7.7530 18 6 2.4112 -1.0399 8.6117 19 7 1.9329 1.4183 8.1470 20 6 1.4567 1.7745 9.4858 21 6 -0.0340 1.5657 9.5607 22 1 -0.5725 1.2036 8.6976 23 6 -0.7099 1.8361 10.7317 24 7 -0.0539 2.2766 11.7829 25 14 -2.5577 1.5781 10.8243 26 1 -3.0542 1.0804 9.5162 27 1 -2.8660 0.5820 11.8817 28 1 -3.2217 2.8660 11.1488 29 7 2.0330 2.2855 7.0516 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.9826 1.5311 -2.1516 36 1 0.5499 2.2176 -1.3489 37 1 2.0852 3.1184 -1.3527 38 1 3.9371 2.4632 0.0191 39 1 3.9946 0.8169 -0.6552 40 1 5.7759 0.5220 2.6011 41 1 5.8673 0.1027 0.8736 42 1 7.0089 2.1449 1.3556 43 1 3.2706 2.7133 2.3494 44 1 2.5664 3.0424 4.5505 45 1 3.0742 -0.5300 5.8389 46 1 1.4655 -1.5774 8.5414 47 1 3.2210 -1.6828 8.2666 48 1 2.5905 -0.7543 9.6482 49 1 1.9495 1.1443 10.2263 50 1 1.6876 2.8205 9.6873 51 1 -0.5295 2.4665 12.6068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592245369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:23 Heat of formation + Delta-G solvation = -23.390554 kcal Electronic energy + Delta-G solvation = -29836.536709 eV Core-core repulsion = 25772.164390 eV Total energy + Delta-G solvation = -4064.372320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77401 -39.87814 -38.13334 -36.67026 -34.82340 -34.35281 -33.33185 -31.59760 -31.02147 -30.55467 -29.47721 -26.62979 -26.55780 -26.26614 -23.82804 -23.26029 -22.17901 -21.05613 -19.98754 -19.81792 -19.53548 -17.92732 -17.48858 -16.66313 -16.41952 -15.79533 -15.60989 -15.23158 -15.08073 -14.75876 -14.57177 -14.24890 -14.17127 -14.06309 -13.87285 -13.61259 -12.97586 -12.66654 -12.51292 -12.46110 -12.37688 -12.25006 -12.24182 -12.04834 -11.77901 -11.61885 -11.44050 -11.36650 -11.07223 -10.86823 -10.82978 -10.69329 -10.58506 -10.39257 -10.23016 -10.21455 -9.94634 -9.60844 -9.48689 -9.13094 -8.62791 -7.86611 -7.35600 -6.23414 -4.30698 2.44790 2.70163 3.14674 3.21459 3.29326 3.35478 3.65002 3.87650 4.05695 4.27100 4.33402 4.42403 4.52052 4.61183 4.87890 5.01538 5.10303 5.12389 5.17797 5.25195 5.33320 5.36490 5.42907 5.44110 5.51282 5.57919 5.72880 5.74683 5.75313 5.84912 5.92082 5.95613 5.99596 6.14601 6.16100 6.17833 6.27038 6.38812 6.50024 6.66848 6.68064 6.98467 7.08988 7.21031 7.34521 7.58101 7.69968 7.91745 8.02175 8.11283 8.66529 8.71916 8.79693 9.35508 10.83780 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002457 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.867093 B =11393.479510 C =12456.015530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.095 4.095 4 H 0.073 0.927 5 C -0.147 4.147 6 C -0.117 4.117 7 C 0.168 3.832 8 H 0.104 0.896 9 C 0.060 3.940 10 O -0.569 6.569 11 N -0.730 5.730 12 C 0.713 3.287 13 O -0.571 6.571 14 N -0.644 5.644 15 C 0.283 3.717 16 C -0.288 4.288 17 C 0.090 3.910 18 C -0.083 4.083 19 N -0.319 5.319 20 C 0.259 3.741 21 C -0.533 4.533 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 N -0.325 5.325 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.377 0.623 43 H 0.398 0.602 44 H 0.406 0.594 45 H 0.160 0.840 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -2.994 -24.335 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.114 4.114 4 H 0.091 0.909 5 C -0.204 4.204 6 C -0.155 4.155 7 C 0.063 3.937 8 H 0.122 0.878 9 C -0.019 4.019 10 O -0.375 6.375 11 N -0.386 5.386 12 C 0.413 3.587 13 O -0.447 6.447 14 N -0.294 5.294 15 C 0.030 3.970 16 C -0.320 4.320 17 C -0.042 4.042 18 C -0.141 4.141 19 N -0.101 5.101 20 C 0.141 3.859 21 C -0.572 4.572 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 N -0.155 5.155 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.223 0.777 43 H 0.232 0.768 44 H 0.240 0.760 45 H 0.177 0.823 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.447 -2.695 -23.482 25.100 hybrid contribution -0.358 0.052 -0.176 0.402 sum 8.089 -2.644 -23.657 25.141 Atomic orbital electron populations 1.21799 0.95902 1.01585 1.01782 1.21647 0.96090 0.96241 1.02016 1.21207 0.94990 0.96626 0.98529 0.90871 1.21864 1.01354 1.00198 0.97004 1.21846 0.95599 1.02855 0.95201 1.20995 0.90997 0.95366 0.86376 0.87808 1.22719 0.94436 0.84837 0.99946 1.86444 1.25444 1.31764 1.93808 1.44996 1.70944 1.13798 1.08895 1.15657 0.78195 0.84722 0.80141 1.90856 1.58032 1.15262 1.80510 1.41404 1.67659 1.13007 1.07291 1.18671 1.00845 0.92649 0.84885 1.21216 1.18910 0.97151 0.94687 1.21050 0.99090 0.89082 0.94944 1.20323 1.02664 0.92641 0.98520 1.48946 1.46478 1.04767 1.09945 1.19670 0.95346 0.98470 0.72417 1.21371 0.91597 1.45773 0.98465 0.91714 1.24930 0.99255 0.94536 0.95123 1.69931 1.36319 1.44292 1.02508 0.86311 0.84180 0.78004 0.78256 1.19582 1.20658 1.20679 1.77253 1.27291 1.17264 0.93711 0.92690 0.92758 0.92907 0.92164 0.91556 0.92829 0.92540 0.92775 0.90349 0.90543 0.92713 0.92993 0.77659 0.76809 0.75992 0.82268 0.90490 0.90887 0.90931 0.92846 0.93071 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.16 0.36 -0.93 16 2 C -0.12 -0.99 5.28 -26.73 -0.14 -1.13 16 3 C -0.10 -0.70 2.32 -90.62 -0.21 -0.91 16 4 H 0.07 0.63 7.49 -51.93 -0.39 0.24 16 5 C -0.15 -0.96 8.80 37.16 0.33 -0.63 16 6 C -0.12 -0.83 3.98 -26.73 -0.11 -0.93 16 7 C 0.17 1.53 2.23 -67.93 -0.15 1.37 16 8 H 0.10 1.08 5.80 -51.93 -0.30 0.78 16 9 C 0.06 0.51 6.85 37.16 0.25 0.77 16 10 O -0.57 -4.58 12.78 -35.23 -0.45 -5.03 16 11 N -0.73 -7.66 4.31 -58.68 -0.25 -7.91 16 12 C 0.71 10.62 8.50 -86.92 -0.74 9.88 16 13 O -0.57 -10.22 13.13 5.28 0.07 -10.15 16 14 N -0.64 -10.32 5.45 -15.51 -0.08 -10.41 16 15 C 0.28 5.89 8.11 -154.36 -1.25 4.64 16 16 C -0.29 -6.06 9.52 -39.84 -0.38 -6.44 16 17 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 18 C -0.08 -1.45 10.11 36.01 0.36 -1.09 16 19 N -0.32 -7.70 3.59 -58.32 -0.21 -7.91 16 20 C 0.26 6.72 5.99 -5.19 -0.03 6.69 16 21 C -0.53 -14.86 9.39 -34.43 -0.32 -15.18 16 22 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 25 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 N -0.32 -7.63 12.59 31.44 0.40 -7.24 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.40 6.70 -51.93 -0.35 0.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.63 6.33 -51.93 -0.33 0.30 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.37 6.86 -51.93 -0.36 0.02 16 37 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 1.65 9.12 45.56 0.42 2.07 16 43 H 0.40 3.43 8.57 -40.82 -0.35 3.08 16 44 H 0.41 5.33 8.84 -40.82 -0.36 4.97 16 45 H 0.16 3.28 5.91 -52.49 -0.31 2.97 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.27 7.07 -51.92 -0.37 0.90 16 49 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 50 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -33.42 412.20 -8.95 -42.38 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.65 Total: 9.18 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.70 Total: -0.86 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.59 Total: -58.00 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.38 Total: -15.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.42 -8.95 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592245369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.985 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds