Wall clock time and date at job start Tue Mar 31 2020 21:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47575 * 2 1 4 4 H 1.08999 * 109.46528 * 55.00089 * 3 2 1 5 5 C 1.52997 * 109.46859 * 295.00388 * 3 2 1 6 6 C 1.52997 * 109.47190 * 174.99853 * 3 2 1 7 7 C 1.52999 * 109.47287 * 294.01042 * 6 3 2 8 8 H 1.09002 * 109.46801 * 56.97883 * 7 6 3 9 9 C 1.53004 * 109.47008 * 176.97540 * 7 6 3 10 10 O 1.42896 * 109.46849 * 55.00230 * 9 7 6 11 11 N 1.46497 * 109.47119 * 296.97888 * 7 6 3 12 12 C 1.34777 * 120.00059 * 155.00490 * 11 7 6 13 13 O 1.21593 * 119.99818 * 359.97438 * 12 11 7 14 14 N 1.34771 * 120.00166 * 179.97438 * 12 11 7 15 15 C 1.40194 * 120.00098 * 179.71991 * 14 12 11 16 16 C 1.40400 * 125.97519 * 359.97438 * 15 14 12 17 17 C 1.35238 * 107.86899 * 179.88983 * 16 15 14 18 18 C 1.50702 * 126.06829 * 180.13802 * 17 16 15 19 19 N 1.34958 * 107.86194 * 0.37017 * 17 16 15 20 20 C 1.46499 * 125.97975 * 179.73281 * 19 17 16 21 21 C 1.50709 * 109.46792 * 270.01659 * 20 19 17 22 22 H 1.07989 * 120.00060 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99611 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00033 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99650 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46913 * 120.00316 * 25 23 21 28 28 H 1.48496 * 109.47079 * 240.00057 * 25 23 21 29 29 N 1.31216 * 125.97406 * 180.30328 * 15 14 12 30 30 H 1.09000 * 109.46668 * 299.99924 * 1 2 3 31 31 H 1.09002 * 109.47117 * 59.99782 * 1 2 3 32 32 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47192 * 240.00065 * 2 1 3 34 34 H 1.08995 * 109.47368 * 120.00544 * 2 1 3 35 35 H 1.08999 * 109.46948 * 305.79311 * 5 3 2 36 36 H 1.08998 * 109.47530 * 65.79998 * 5 3 2 37 37 H 1.09011 * 109.46434 * 185.79929 * 5 3 2 38 38 H 1.09004 * 109.46930 * 174.01264 * 6 3 2 39 39 H 1.08998 * 109.47183 * 54.01383 * 6 3 2 40 40 H 1.09003 * 109.46664 * 174.99829 * 9 7 6 41 41 H 1.08990 * 109.47318 * 295.00033 * 9 7 6 42 42 H 0.96699 * 114.00193 * 179.97438 * 10 9 7 43 43 H 0.96996 * 120.00330 * 334.99808 * 11 7 6 44 44 H 0.97006 * 120.00240 * 359.97438 * 14 12 11 45 45 H 1.07999 * 126.06228 * 0.02562 * 16 15 14 46 46 H 1.08999 * 109.47406 * 270.27147 * 18 17 16 47 47 H 1.09002 * 109.47521 * 30.27728 * 18 17 16 48 48 H 1.09007 * 109.47027 * 150.27568 * 18 17 16 49 49 H 1.09002 * 109.47035 * 30.01348 * 20 19 17 50 50 H 1.08999 * 109.47248 * 150.02007 * 20 19 17 51 51 H 0.97003 * 119.99663 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 6 3.9642 0.8964 1.4974 8 1 3.5465 -0.1022 1.6253 9 6 5.4896 0.8275 1.5947 10 8 6.0434 2.1140 1.3117 11 7 3.4473 1.7799 2.5454 12 6 3.2175 1.2959 3.7821 13 8 3.4387 0.1258 4.0278 14 7 2.7425 2.1088 4.7464 15 6 2.4979 1.6040 6.0312 16 6 2.7015 0.2793 6.4494 17 6 2.3510 0.1971 7.7530 18 6 2.4112 -1.0399 8.6117 19 7 1.9329 1.4183 8.1470 20 6 1.4567 1.7745 9.4858 21 6 -0.0340 1.5657 9.5607 22 1 -0.5725 1.2036 8.6976 23 6 -0.7099 1.8361 10.7317 24 7 -0.0539 2.2766 11.7829 25 14 -2.5577 1.5781 10.8243 26 1 -3.0542 1.0804 9.5162 27 1 -2.8660 0.5820 11.8817 28 1 -3.2217 2.8660 11.1488 29 7 2.0330 2.2855 7.0516 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.9826 1.5311 -2.1516 36 1 0.5499 2.2176 -1.3489 37 1 2.0852 3.1184 -1.3527 38 1 3.9371 2.4632 0.0191 39 1 3.9946 0.8169 -0.6552 40 1 5.7759 0.5220 2.6011 41 1 5.8673 0.1027 0.8736 42 1 7.0089 2.1449 1.3556 43 1 3.2706 2.7133 2.3494 44 1 2.5664 3.0424 4.5505 45 1 3.0742 -0.5300 5.8389 46 1 1.4655 -1.5774 8.5414 47 1 3.2210 -1.6828 8.2666 48 1 2.5905 -0.7543 9.6482 49 1 1.9495 1.1443 10.2263 50 1 1.6876 2.8205 9.6873 51 1 -0.5295 2.4665 12.6068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592245369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:23 Heat of formation + Delta-G solvation = -46.374002 kcal Electronic energy + Delta-G solvation = -29837.533346 eV Core-core repulsion = 25772.164390 eV Total energy + Delta-G solvation = -4065.368957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30649 -41.13138 -39.00304 -37.28769 -36.30083 -35.38540 -35.19864 -33.09432 -32.62703 -31.62944 -30.24262 -28.47827 -27.84868 -27.20904 -25.14551 -24.43436 -23.48506 -21.94101 -21.33041 -21.11044 -20.57661 -19.15332 -18.77096 -18.30057 -17.69427 -17.22104 -16.80762 -16.41918 -16.18378 -16.00200 -15.83124 -15.62171 -15.18315 -14.97437 -14.82637 -14.67990 -14.35348 -14.22799 -13.78927 -13.70021 -13.52413 -13.26357 -13.19264 -13.09960 -12.98293 -12.84881 -12.76238 -12.67335 -12.41017 -12.25957 -12.11714 -12.06239 -11.55905 -11.48603 -11.33899 -11.31334 -11.24357 -11.08020 -10.82857 -10.73416 -10.11848 -9.54611 -9.05849 -8.32302 -6.50069 1.03631 1.15247 1.36741 1.38402 1.51348 1.69155 2.10777 2.35575 2.41864 2.96934 3.14924 3.44711 3.70001 3.87743 3.90741 3.99330 4.18024 4.20745 4.34192 4.44552 4.49762 4.54167 4.65087 4.69693 4.72714 4.73162 4.78369 4.80718 4.88346 4.90314 4.92632 4.99893 5.03036 5.13876 5.16536 5.17648 5.21376 5.25708 5.26552 5.35319 5.53252 5.54530 5.57793 5.62558 5.81689 5.89950 5.99564 6.28569 6.62475 6.77501 6.89912 7.15055 7.20898 7.46359 8.73550 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.002457 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.867093 B =11393.479510 C =12456.015530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.059 0.941 5 C -0.144 4.144 6 C -0.104 4.104 7 C 0.162 3.838 8 H 0.092 0.908 9 C 0.065 3.935 10 O -0.578 6.578 11 N -0.710 5.710 12 C 0.712 3.288 13 O -0.600 6.600 14 N -0.638 5.638 15 C 0.293 3.707 16 C -0.296 4.296 17 C 0.086 3.914 18 C -0.081 4.081 19 N -0.344 5.344 20 C 0.275 3.725 21 C -0.551 4.551 22 H 0.048 0.952 23 C 0.022 3.978 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.274 1.274 27 H -0.266 1.266 28 H -0.274 1.274 29 N -0.362 5.362 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.393 0.607 43 H 0.410 0.590 44 H 0.419 0.581 45 H 0.167 0.833 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.024 0.976 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -3.453 -26.368 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.111 4.111 4 H 0.077 0.923 5 C -0.201 4.201 6 C -0.142 4.142 7 C 0.058 3.942 8 H 0.109 0.891 9 C -0.014 4.014 10 O -0.386 6.386 11 N -0.365 5.365 12 C 0.412 3.588 13 O -0.478 6.478 14 N -0.289 5.289 15 C 0.037 3.963 16 C -0.327 4.327 17 C -0.044 4.044 18 C -0.139 4.139 19 N -0.127 5.127 20 C 0.157 3.843 21 C -0.590 4.590 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.557 5.557 25 Si 0.796 3.204 26 H -0.199 1.199 27 H -0.191 1.191 28 H -0.200 1.200 29 N -0.192 5.192 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.243 0.757 43 H 0.246 0.754 44 H 0.256 0.744 45 H 0.184 0.816 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.042 0.958 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.537 -3.126 -25.571 27.139 hybrid contribution -0.283 0.194 0.323 0.472 sum 8.254 -2.932 -25.247 26.724 Atomic orbital electron populations 1.21804 0.96331 1.01470 1.01505 1.21635 0.95710 0.96690 1.01823 1.21172 0.95181 0.96083 0.98709 0.92273 1.21831 1.01254 1.00495 0.96516 1.21768 0.95234 1.03171 0.94032 1.21196 0.91613 0.94638 0.86766 0.89051 1.22588 0.93829 0.85684 0.99270 1.86397 1.27164 1.31375 1.93660 1.44933 1.69510 1.14615 1.07475 1.15809 0.77904 0.84203 0.80903 1.90823 1.59255 1.16567 1.81172 1.41425 1.67676 1.13920 1.05913 1.18965 0.98806 0.92599 0.85888 1.21384 1.19198 0.97470 0.94652 1.21738 0.97658 0.89306 0.95715 1.20461 1.04275 0.91456 0.97718 1.48753 1.48361 1.05927 1.09633 1.19238 0.94647 0.96688 0.73773 1.21464 0.92587 1.46589 0.98312 0.93329 1.25732 1.03762 0.93822 0.94528 1.70009 1.38190 1.44430 1.03042 0.85305 0.78515 0.78358 0.78272 1.19902 1.19135 1.19953 1.77172 1.29422 1.18250 0.94391 0.94347 0.91613 0.92985 0.90750 0.93292 0.91925 0.92820 0.92251 0.90030 0.88864 0.95237 0.90588 0.75721 0.75429 0.74434 0.81605 0.89864 0.87599 0.91289 0.92997 0.95826 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.67 71.98 0.70 -1.78 16 2 C -0.12 -1.80 5.28 30.60 0.16 -1.64 16 3 C -0.09 -1.22 2.32 -10.79 -0.03 -1.24 16 4 H 0.06 0.95 7.49 -2.39 -0.02 0.93 16 5 C -0.14 -1.54 8.80 71.98 0.63 -0.91 16 6 C -0.10 -1.23 3.98 30.59 0.12 -1.11 16 7 C 0.16 2.72 2.23 44.99 0.10 2.82 16 8 H 0.09 1.83 5.80 -2.39 -0.01 1.81 16 9 C 0.07 1.01 6.85 71.98 0.49 1.50 16 10 O -0.58 -7.97 12.78 -148.98 -1.90 -9.87 16 11 N -0.71 -14.17 4.31 -457.81 -1.97 -16.15 16 12 C 0.71 20.94 8.50 179.06 1.52 22.46 16 13 O -0.60 -21.43 13.13 -4.01 -0.05 -21.48 16 14 N -0.64 -20.39 5.45 -321.23 -1.75 -22.14 16 15 C 0.29 12.33 8.11 133.31 1.08 13.41 16 16 C -0.30 -12.50 9.52 22.10 0.21 -12.29 16 17 C 0.09 3.73 6.92 41.39 0.29 4.02 16 18 C -0.08 -2.78 10.11 71.24 0.72 -2.06 16 19 N -0.34 -17.10 3.59 -338.44 -1.22 -18.32 16 20 C 0.28 14.84 5.99 85.64 0.51 15.36 16 21 C -0.55 -31.40 9.39 25.60 0.24 -31.16 16 22 H 0.05 2.87 7.81 -2.92 -0.02 2.85 16 23 C 0.02 1.24 5.46 84.66 0.46 1.70 16 24 N -0.92 -52.34 13.29 21.45 0.28 -52.06 16 25 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 N -0.36 -17.48 12.59 -54.43 -0.69 -18.16 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.89 6.70 -2.39 -0.02 0.88 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.90 6.33 -2.39 -0.02 0.89 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.61 6.86 -2.39 -0.02 0.60 16 37 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 38 H 0.08 0.97 7.66 -2.38 -0.02 0.95 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.39 2.55 9.12 -74.06 -0.68 1.87 16 43 H 0.41 6.45 8.57 -92.71 -0.79 5.66 16 44 H 0.42 10.87 8.84 -92.70 -0.82 10.05 16 45 H 0.17 6.80 5.91 -2.91 -0.02 6.78 16 46 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 47 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.07 2.40 7.07 -2.38 -0.02 2.39 16 49 H 0.05 2.76 7.04 -2.39 -0.02 2.75 16 50 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -72.79 412.20 0.62 -72.17 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -1.32 Total: 31.34 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 7.22 Total: 9.07 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.34 Total: -126.82 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.96 Total: -31.36 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.79 0.62 -72.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592245369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.793 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds