Wall clock time and date at job start Tue Mar 31 2020 21:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46966 * 2 1 4 4 H 1.08996 * 109.50433 * 54.93297 * 3 2 1 5 5 C 1.53194 * 109.49625 * 294.83109 * 3 2 1 6 6 N 1.46918 * 108.78089 * 185.41610 * 5 3 2 7 7 C 1.34779 * 120.63268 * 233.61461 * 6 5 3 8 8 O 1.21280 * 119.99784 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99982 * 179.97438 * 7 6 5 10 10 N 1.46490 * 109.47223 * 179.97438 * 9 7 6 11 11 C 1.46385 * 119.33213 * 89.99840 * 10 9 7 12 12 C 1.53238 * 109.15695 * 209.04120 * 11 10 9 13 13 C 1.53245 * 108.56125 * 304.51848 * 12 11 10 14 14 N 1.46378 * 109.15159 * 55.48170 * 13 12 11 15 15 C 1.34136 * 121.34149 * 330.68058 * 14 13 12 16 16 O 1.21590 * 118.70504 * 180.84686 * 15 14 13 17 17 C 1.46929 * 118.73922 * 53.60697 * 6 5 3 18 18 C 1.53196 * 108.77486 * 306.39780 * 17 6 5 19 19 C 1.53037 * 109.31315 * 54.63188 * 18 17 6 20 20 H 1.08996 * 109.46349 * 178.61401 * 19 18 17 21 21 N 1.46507 * 109.46169 * 58.64137 * 19 18 17 22 22 C 1.36935 * 119.99577 * 84.99777 * 21 19 18 23 23 H 1.07991 * 120.00630 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99660 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00279 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47047 * 89.99668 * 26 24 22 28 28 H 1.48497 * 109.46970 * 209.99944 * 26 24 22 29 29 H 1.48498 * 109.46811 * 329.99980 * 26 24 22 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46873 * 300.00542 * 1 2 3 32 32 H 1.08994 * 109.46623 * 60.00693 * 1 2 3 33 33 H 1.08998 * 109.47564 * 239.99167 * 2 1 3 34 34 H 1.09005 * 109.47101 * 119.99208 * 2 1 3 35 35 H 1.09008 * 109.58991 * 305.21097 * 5 3 2 36 36 H 1.09000 * 109.58500 * 65.48428 * 5 3 2 37 37 H 1.09003 * 109.47153 * 300.00025 * 9 7 6 38 38 H 1.08998 * 109.47026 * 59.99715 * 9 7 6 39 39 H 1.08995 * 109.52183 * 328.94801 * 11 10 9 40 40 H 1.09002 * 109.51907 * 89.07057 * 11 10 9 41 41 H 1.08997 * 109.62057 * 64.24270 * 12 11 10 42 42 H 1.08999 * 109.62002 * 184.61588 * 12 11 10 43 43 H 1.09000 * 109.52512 * 175.38593 * 13 12 11 44 44 H 1.09003 * 109.52681 * 295.57661 * 13 12 11 45 45 H 0.97001 * 119.33099 * 150.96184 * 14 13 12 46 46 H 1.08998 * 109.59209 * 186.60595 * 17 6 5 47 47 H 1.09003 * 109.58217 * 66.17876 * 17 6 5 48 48 H 1.08998 * 109.49640 * 174.58442 * 18 17 6 49 49 H 1.08994 * 109.49723 * 294.64754 * 18 17 6 50 50 H 0.97000 * 119.99875 * 264.99673 * 21 19 18 51 51 H 0.96998 * 119.99461 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9824 0.8409 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4642 -1.3510 7 6 1.4857 4.5563 -1.5680 8 8 0.2898 4.4403 -1.7328 9 6 2.1226 5.9216 -1.6060 10 7 1.0935 6.9338 -1.8557 11 6 0.4043 7.5507 -0.7212 12 6 -1.0070 7.9625 -1.1536 13 6 -0.8947 8.8759 -2.3789 14 7 -0.1351 8.1870 -3.4234 15 6 0.8056 7.2805 -3.1192 16 8 1.4186 6.7486 -4.0246 17 6 3.6953 3.5888 -1.1500 18 6 4.0736 2.8882 0.1588 19 6 3.5652 1.4451 0.1257 20 1 3.8545 0.9370 1.0456 21 7 4.1505 0.7475 -1.0220 22 6 5.3878 0.1707 -0.9143 23 1 5.9319 0.2296 0.0166 24 6 5.9426 -0.4898 -2.0019 25 7 5.2796 -0.5611 -3.1367 26 14 7.6301 -1.2774 -1.8550 27 1 7.4827 -2.6811 -1.3935 28 1 8.3016 -1.2595 -3.1793 29 1 8.4473 -0.5175 -0.8753 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.9965 1.5375 -2.1550 36 1 0.5532 2.2137 -1.3599 37 1 2.6070 6.1233 -0.6506 38 1 2.8649 5.9542 -2.4036 39 1 0.3400 6.8354 0.0987 40 1 0.9575 8.4311 -0.3939 41 1 -1.5847 7.0746 -1.4105 42 1 -1.4981 8.4959 -0.3398 43 1 -1.8921 9.1123 -2.7496 44 1 -0.3807 9.7962 -2.1014 45 1 -0.3127 8.3932 -4.3545 46 1 3.9671 4.6427 -1.0921 47 1 4.2210 3.1188 -1.9812 48 1 5.1577 2.8895 0.2719 49 1 3.6197 3.4152 0.9979 50 1 3.6616 0.6943 -1.8580 51 1 5.6675 -1.0224 -3.8968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:54 Heat of formation + Delta-G solvation = -47.215567 kcal Electronic energy + Delta-G solvation = -31378.842193 eV Core-core repulsion = 27313.436743 eV Total energy + Delta-G solvation = -4065.405450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90724 -39.74961 -37.73743 -36.52696 -34.95200 -34.38327 -33.71293 -31.66593 -31.25356 -29.52480 -29.07799 -27.76706 -25.80053 -24.63031 -23.78197 -23.45318 -23.05338 -20.78304 -19.96951 -18.99261 -18.21579 -17.68899 -17.41852 -17.24053 -16.93983 -15.95784 -15.56043 -15.14711 -14.76967 -14.57425 -14.42018 -14.24013 -13.97203 -13.95155 -13.91152 -13.47437 -13.26337 -13.17804 -12.94877 -12.59649 -12.40895 -12.19979 -11.81909 -11.71973 -11.65332 -11.54557 -11.33461 -11.06601 -10.95202 -10.79024 -10.70402 -10.28194 -10.24269 -10.15609 -10.14009 -9.79398 -9.74872 -9.53023 -9.25930 -8.91396 -8.63831 -8.15600 -6.95750 -5.76755 -3.05531 2.46579 2.89123 3.10371 3.42266 3.43009 3.48289 3.50296 3.66351 4.36356 4.49255 4.58931 4.72782 4.78945 4.91043 5.05001 5.13253 5.15976 5.24708 5.31854 5.36040 5.38254 5.43632 5.50451 5.57509 5.61219 5.71732 5.79206 5.82212 5.85353 5.93559 6.08471 6.14218 6.18099 6.22347 6.36196 6.39362 6.43258 6.44113 6.59367 6.67338 6.73408 6.79616 6.93159 6.96759 7.04885 7.69336 7.69948 7.77829 8.41454 8.44686 8.54019 9.53030 10.10006 10.44847 11.45498 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003012 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.889864 B = 9294.055700 C =10173.742688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.064 0.936 5 C 0.120 3.880 6 N -0.600 5.600 7 C 0.498 3.502 8 O -0.546 6.546 9 C 0.113 3.887 10 N -0.605 5.605 11 C 0.117 3.883 12 C -0.153 4.153 13 C 0.112 3.888 14 N -0.738 5.738 15 C 0.715 3.285 16 O -0.593 6.593 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.050 0.950 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.414 0.586 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 18.636 8.097 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.333 5.333 7 C 0.284 3.716 8 O -0.424 6.424 9 C -0.014 4.014 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.192 4.192 13 C -0.013 4.013 14 N -0.397 5.397 15 C 0.416 3.584 16 O -0.471 6.471 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.251 0.749 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.220 0.780 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.276 18.187 7.757 23.273 hybrid contribution 0.774 -0.406 -0.459 0.987 sum -11.501 17.781 7.298 22.399 Atomic orbital electron populations 1.21848 0.96879 1.00988 1.01284 1.21418 0.94223 0.95822 1.03348 1.21739 0.97369 0.96069 0.96997 0.91716 1.21646 0.98686 0.81738 0.98164 1.48119 1.08650 1.06492 1.69996 1.21029 0.87353 0.86562 0.76647 1.90634 1.15014 1.86526 1.50247 1.21247 0.90517 0.85290 1.04313 1.46329 1.41496 1.41724 1.04605 1.21544 0.92189 0.97855 0.89041 1.22181 0.97339 1.01242 0.98401 1.21496 0.96505 0.94819 0.88473 1.44878 1.39971 1.44521 1.10283 1.15347 0.80302 0.79759 0.82945 1.90982 1.53918 1.57273 1.44921 1.21754 0.79253 0.99840 1.00143 1.22528 1.01826 0.99351 0.95353 1.20213 0.89733 0.90629 0.92597 0.93189 1.42490 1.19141 1.63908 1.10581 1.19197 0.93674 1.27042 0.97006 0.91284 1.24713 0.98532 1.01487 0.96023 1.69654 1.38131 1.47924 1.02187 0.86245 0.84269 0.79329 0.76635 1.21879 1.21907 1.20865 0.93192 0.93460 0.92813 0.90489 0.92062 0.90868 0.89795 0.87672 0.86577 0.90005 0.91668 0.89856 0.88730 0.90036 0.91909 0.74922 0.91405 0.89506 0.90693 0.93368 0.78047 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.66 2.14 -90.50 -0.19 -1.85 16 4 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.12 2.10 5.03 -3.71 -0.02 2.08 16 6 N -0.60 -9.92 2.97 -172.76 -0.51 -10.43 16 7 C 0.50 8.25 7.76 -10.98 -0.09 8.17 16 8 O -0.55 -10.66 15.85 5.56 0.09 -10.57 16 9 C 0.11 1.49 4.15 -5.20 -0.02 1.47 16 10 N -0.60 -7.66 2.30 -181.16 -0.42 -8.08 16 11 C 0.12 1.00 6.49 -3.98 -0.03 0.97 16 12 C -0.15 -1.08 6.20 -26.48 -0.16 -1.24 16 13 C 0.11 0.72 7.20 -3.98 -0.03 0.69 16 14 N -0.74 -7.71 5.58 -65.53 -0.37 -8.08 16 15 C 0.72 10.54 8.18 -88.06 -0.72 9.82 16 16 O -0.59 -11.41 16.48 5.29 0.09 -11.32 16 17 C 0.11 1.77 6.08 -3.71 -0.02 1.75 16 18 C -0.15 -2.37 5.78 -26.61 -0.15 -2.52 16 19 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.48 3.72 -53.38 -0.20 -16.68 16 22 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 26 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 33 H 0.08 1.46 7.70 -51.93 -0.40 1.06 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.45 6.64 -51.92 -0.34 1.11 16 36 H 0.08 1.50 5.73 -51.93 -0.30 1.20 16 37 H 0.11 1.01 7.61 -51.93 -0.39 0.61 16 38 H 0.12 1.65 7.09 -51.93 -0.37 1.28 16 39 H 0.08 0.69 8.06 -51.93 -0.42 0.28 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.41 3.82 8.88 -40.82 -0.36 3.46 16 46 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 47 H 0.09 1.66 7.74 -51.93 -0.40 1.26 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.38 9.58 5.94 -40.82 -0.24 9.34 16 51 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -34.74 394.48 -9.81 -44.54 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.50 Total: 12.41 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -1.63 Total: 12.01 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -0.77 Total: -69.88 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.74 -9.81 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.671 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds