Wall clock time and date at job start Tue Mar 31 2020 21:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46966 * 2 1 4 4 H 1.08996 * 109.50433 * 54.93297 * 3 2 1 5 5 C 1.53194 * 109.49625 * 294.83109 * 3 2 1 6 6 N 1.46918 * 108.78089 * 185.41610 * 5 3 2 7 7 C 1.34779 * 120.63268 * 233.61461 * 6 5 3 8 8 O 1.21280 * 119.99784 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99982 * 179.97438 * 7 6 5 10 10 N 1.46490 * 109.47223 * 179.97438 * 9 7 6 11 11 C 1.46385 * 119.33213 * 89.99840 * 10 9 7 12 12 C 1.53238 * 109.15695 * 209.04120 * 11 10 9 13 13 C 1.53245 * 108.56125 * 304.51848 * 12 11 10 14 14 N 1.46378 * 109.15159 * 55.48170 * 13 12 11 15 15 C 1.34136 * 121.34149 * 330.68058 * 14 13 12 16 16 O 1.21590 * 118.70504 * 180.84686 * 15 14 13 17 17 C 1.46929 * 118.73922 * 53.60697 * 6 5 3 18 18 C 1.53196 * 108.77486 * 306.39780 * 17 6 5 19 19 C 1.53037 * 109.31315 * 54.63188 * 18 17 6 20 20 H 1.08996 * 109.46349 * 178.61401 * 19 18 17 21 21 N 1.46507 * 109.46169 * 58.64137 * 19 18 17 22 22 C 1.36935 * 119.99577 * 84.99777 * 21 19 18 23 23 H 1.07991 * 120.00630 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99660 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00279 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47047 * 89.99668 * 26 24 22 28 28 H 1.48497 * 109.46970 * 209.99944 * 26 24 22 29 29 H 1.48498 * 109.46811 * 329.99980 * 26 24 22 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46873 * 300.00542 * 1 2 3 32 32 H 1.08994 * 109.46623 * 60.00693 * 1 2 3 33 33 H 1.08998 * 109.47564 * 239.99167 * 2 1 3 34 34 H 1.09005 * 109.47101 * 119.99208 * 2 1 3 35 35 H 1.09008 * 109.58991 * 305.21097 * 5 3 2 36 36 H 1.09000 * 109.58500 * 65.48428 * 5 3 2 37 37 H 1.09003 * 109.47153 * 300.00025 * 9 7 6 38 38 H 1.08998 * 109.47026 * 59.99715 * 9 7 6 39 39 H 1.08995 * 109.52183 * 328.94801 * 11 10 9 40 40 H 1.09002 * 109.51907 * 89.07057 * 11 10 9 41 41 H 1.08997 * 109.62057 * 64.24270 * 12 11 10 42 42 H 1.08999 * 109.62002 * 184.61588 * 12 11 10 43 43 H 1.09000 * 109.52512 * 175.38593 * 13 12 11 44 44 H 1.09003 * 109.52681 * 295.57661 * 13 12 11 45 45 H 0.97001 * 119.33099 * 150.96184 * 14 13 12 46 46 H 1.08998 * 109.59209 * 186.60595 * 17 6 5 47 47 H 1.09003 * 109.58217 * 66.17876 * 17 6 5 48 48 H 1.08998 * 109.49640 * 174.58442 * 18 17 6 49 49 H 1.08994 * 109.49723 * 294.64754 * 18 17 6 50 50 H 0.97000 * 119.99875 * 264.99673 * 21 19 18 51 51 H 0.96998 * 119.99461 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9824 0.8409 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4642 -1.3510 7 6 1.4857 4.5563 -1.5680 8 8 0.2898 4.4403 -1.7328 9 6 2.1226 5.9216 -1.6060 10 7 1.0935 6.9338 -1.8557 11 6 0.4043 7.5507 -0.7212 12 6 -1.0070 7.9625 -1.1536 13 6 -0.8947 8.8759 -2.3789 14 7 -0.1351 8.1870 -3.4234 15 6 0.8056 7.2805 -3.1192 16 8 1.4186 6.7486 -4.0246 17 6 3.6953 3.5888 -1.1500 18 6 4.0736 2.8882 0.1588 19 6 3.5652 1.4451 0.1257 20 1 3.8545 0.9370 1.0456 21 7 4.1505 0.7475 -1.0220 22 6 5.3878 0.1707 -0.9143 23 1 5.9319 0.2296 0.0166 24 6 5.9426 -0.4898 -2.0019 25 7 5.2796 -0.5611 -3.1367 26 14 7.6301 -1.2774 -1.8550 27 1 7.4827 -2.6811 -1.3935 28 1 8.3016 -1.2595 -3.1793 29 1 8.4473 -0.5175 -0.8753 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.9965 1.5375 -2.1550 36 1 0.5532 2.2137 -1.3599 37 1 2.6070 6.1233 -0.6506 38 1 2.8649 5.9542 -2.4036 39 1 0.3400 6.8354 0.0987 40 1 0.9575 8.4311 -0.3939 41 1 -1.5847 7.0746 -1.4105 42 1 -1.4981 8.4959 -0.3398 43 1 -1.8921 9.1123 -2.7496 44 1 -0.3807 9.7962 -2.1014 45 1 -0.3127 8.3932 -4.3545 46 1 3.9671 4.6427 -1.0921 47 1 4.2210 3.1188 -1.9812 48 1 5.1577 2.8895 0.2719 49 1 3.6197 3.4152 0.9979 50 1 3.6616 0.6943 -1.8580 51 1 5.6675 -1.0224 -3.8968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037887336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:53 Heat of formation + Delta-G solvation = -71.559808 kcal Electronic energy + Delta-G solvation = -31379.897838 eV Core-core repulsion = 27313.436743 eV Total energy + Delta-G solvation = -4066.461095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94579 -41.02423 -39.13824 -37.48212 -35.88418 -35.86855 -35.31043 -33.38309 -32.06508 -30.99837 -30.49100 -28.94800 -26.66731 -26.01563 -25.30509 -25.02043 -23.89592 -22.14777 -21.13170 -19.98860 -19.59895 -19.21100 -18.59589 -18.33213 -18.14610 -17.12528 -16.66332 -16.56472 -16.22028 -15.86181 -15.72530 -15.49897 -15.24917 -15.04033 -14.76636 -14.68241 -14.63828 -14.43329 -14.20252 -14.05043 -13.61944 -13.35335 -13.09315 -12.89117 -12.83525 -12.72296 -12.59617 -12.35366 -12.32952 -12.21897 -12.11464 -12.09622 -11.82128 -11.57574 -11.44130 -11.22846 -11.11679 -11.05813 -10.79874 -10.15533 -9.60064 -9.56917 -8.90163 -7.86892 -5.13234 1.49956 1.50259 1.51664 1.58464 1.60212 2.02603 2.24734 2.61059 2.90578 3.46790 3.51064 3.79950 3.83745 3.86966 3.96663 4.01719 4.07118 4.10752 4.26433 4.28685 4.37506 4.39816 4.44174 4.47631 4.48979 4.61936 4.67866 4.71150 4.77520 4.85783 4.87070 4.89495 5.01260 5.06746 5.18291 5.20017 5.24501 5.26603 5.34166 5.35694 5.40872 5.52500 5.58560 5.62640 5.70197 6.08579 6.34544 6.47013 6.78596 7.14508 7.41650 7.52132 8.19401 8.41561 9.36640 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003012 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.889864 B = 9294.055700 C =10173.742688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.088 4.088 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.600 5.600 7 C 0.494 3.506 8 O -0.580 6.580 9 C 0.116 3.884 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.150 4.150 13 C 0.107 3.893 14 N -0.733 5.733 15 C 0.701 3.299 16 O -0.653 6.653 17 C 0.117 3.883 18 C -0.140 4.140 19 C 0.170 3.830 20 H 0.051 0.949 21 N -0.727 5.727 22 C -0.222 4.222 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.964 3.036 27 H -0.293 1.293 28 H -0.304 1.304 29 H -0.267 1.267 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.416 0.584 46 H 0.108 0.892 47 H 0.045 0.955 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.371 0.629 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 21.453 11.450 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.108 4.108 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.332 5.332 7 C 0.282 3.718 8 O -0.460 6.460 9 C -0.011 4.011 10 N -0.342 5.342 11 C -0.014 4.014 12 C -0.188 4.188 13 C -0.016 4.016 14 N -0.390 5.390 15 C 0.402 3.598 16 O -0.536 6.536 17 C -0.005 4.005 18 C -0.180 4.180 19 C 0.062 3.938 20 H 0.069 0.931 21 N -0.368 5.368 22 C -0.354 4.354 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.624 5.624 26 Si 0.795 3.205 27 H -0.221 1.221 28 H -0.232 1.232 29 H -0.191 1.191 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.169 0.831 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.254 0.746 46 H 0.126 0.874 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.204 0.796 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.895 21.073 11.212 27.131 hybrid contribution 0.837 -1.221 -1.438 2.064 sum -12.058 19.852 9.774 25.200 Atomic orbital electron populations 1.21774 0.94866 1.01839 1.01744 1.21351 0.95987 0.95457 1.01669 1.21637 0.96005 0.96198 0.96924 0.89180 1.21437 0.98278 0.82306 0.97631 1.48179 1.08989 1.06148 1.69927 1.21743 0.87001 0.87649 0.75381 1.90614 1.16624 1.87140 1.51607 1.21322 0.90359 0.83403 1.06042 1.46489 1.41455 1.41182 1.05042 1.21923 0.93072 0.98854 0.87580 1.22212 0.96312 1.00458 0.99842 1.21841 0.97502 0.94989 0.87273 1.44960 1.38867 1.43507 1.11635 1.15751 0.80684 0.80245 0.83100 1.90931 1.56265 1.59628 1.46804 1.21730 0.78294 1.01888 0.98625 1.22393 1.01626 0.97466 0.96523 1.20496 0.90885 0.91798 0.90650 0.93142 1.42646 1.18371 1.64299 1.11460 1.19590 0.94290 1.24836 0.96698 0.90345 1.25428 1.01944 1.03455 0.96113 1.69829 1.39726 1.49944 1.02876 0.85262 0.80773 0.78362 0.76113 1.22115 1.23178 1.19144 0.92248 0.91494 0.93727 0.94180 0.91622 0.94436 0.90238 0.83145 0.87902 0.89719 0.88462 0.93034 0.84918 0.87664 0.89371 0.74641 0.87436 0.93632 0.91208 0.89650 0.79593 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.67 71.98 0.70 -3.20 16 2 C -0.11 -3.44 5.19 30.60 0.16 -3.28 16 3 C -0.09 -2.79 2.14 -10.71 -0.02 -2.81 16 4 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.13 4.53 5.03 86.36 0.43 4.96 16 6 N -0.60 -19.66 2.97 -818.89 -2.43 -22.09 16 7 C 0.49 16.07 7.76 87.66 0.68 16.75 16 8 O -0.58 -22.69 15.85 -3.03 -0.05 -22.74 16 9 C 0.12 2.85 4.15 85.64 0.36 3.20 16 10 N -0.61 -14.32 2.30 -845.68 -1.95 -16.27 16 11 C 0.11 1.46 6.49 86.48 0.56 2.02 16 12 C -0.15 -1.63 6.20 30.76 0.19 -1.44 16 13 C 0.11 1.03 7.20 86.48 0.62 1.66 16 14 N -0.73 -14.43 5.58 -479.84 -2.68 -17.11 16 15 C 0.70 20.44 8.18 179.45 1.47 21.90 16 16 O -0.65 -26.03 16.48 -4.00 -0.07 -26.10 16 17 C 0.12 3.56 6.08 86.36 0.53 4.09 16 18 C -0.14 -4.10 5.78 30.67 0.18 -3.92 16 19 C 0.17 6.07 2.53 45.02 0.11 6.18 16 20 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 21 N -0.73 -34.09 3.72 -322.81 -1.20 -35.29 16 22 C -0.22 -11.63 9.93 84.03 0.83 -10.80 16 23 H 0.08 3.90 7.83 -2.92 -0.02 3.88 16 24 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 25 N -0.97 -59.62 13.06 21.65 0.28 -59.33 16 26 Si 0.96 45.84 29.55 68.60 2.03 47.87 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.27 6.70 -2.39 -0.02 1.26 16 33 H 0.04 1.59 7.70 -2.39 -0.02 1.57 16 34 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.04 1.61 6.64 -2.38 -0.02 1.59 16 36 H 0.08 2.91 5.73 -2.39 -0.01 2.90 16 37 H 0.15 2.25 7.61 -2.39 -0.02 2.23 16 38 H 0.10 2.87 7.09 -2.39 -0.02 2.85 16 39 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.42 7.48 8.88 -92.71 -0.82 6.66 16 46 H 0.11 2.41 5.93 -2.39 -0.01 2.39 16 47 H 0.05 1.79 7.74 -2.39 -0.02 1.77 16 48 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.37 19.51 5.94 -92.71 -0.55 18.95 16 51 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -81.26 394.48 0.77 -80.49 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.43 Total: 39.14 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 7.26 Total: 31.42 kcal Atomic # 7 Polarization: -142.11 SS G_CDS: -7.98 Total: -150.09 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.11 Total: -48.84 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -81.26 0.77 -80.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.933 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds