Wall clock time and date at job start Tue Mar 31 2020 21:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99678 * 2 1 4 4 O 1.21588 * 119.99621 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00179 * 180.02562 * 3 2 1 6 6 C 1.46493 * 120.00319 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46951 * 60.00084 * 6 5 3 8 8 C 1.53003 * 109.47120 * 300.00104 * 6 5 3 9 9 C 1.50693 * 109.47372 * 179.97438 * 6 5 3 10 10 O 1.21288 * 120.00309 * 145.00338 * 9 6 5 11 11 N 1.34781 * 119.99971 * 325.00081 * 9 6 5 12 12 C 1.46510 * 119.99912 * 179.97438 * 11 9 6 13 13 C 1.53954 * 113.57368 * 155.00260 * 12 11 9 14 14 C 1.52905 * 86.78040 * 89.87119 * 13 12 11 15 15 C 1.52917 * 121.13340 * 150.61456 * 14 13 12 16 16 C 1.53957 * 86.77928 * 150.61497 * 15 14 13 17 17 N 1.46499 * 113.58030 * 220.66444 * 16 15 14 18 18 C 1.36934 * 119.99782 * 205.00320 * 17 16 15 19 19 H 1.07999 * 120.00173 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99964 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00279 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99825 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46937 * 89.99885 * 22 20 18 24 24 H 1.48496 * 109.47099 * 209.99774 * 22 20 18 25 25 H 1.48496 * 109.47326 * 330.00153 * 22 20 18 26 26 C 1.52909 * 121.13655 * 259.17353 * 14 13 12 27 27 C 1.52910 * 88.04631 * 24.89586 * 14 13 12 28 28 H 1.09009 * 109.46613 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47247 * 299.99816 * 1 2 3 30 30 H 1.09001 * 109.46934 * 60.00474 * 1 2 3 31 31 H 0.96999 * 119.99979 * 180.02562 * 2 1 3 32 32 H 0.97009 * 119.99493 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.46790 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46873 * 299.99410 * 7 6 5 35 35 H 1.08999 * 109.47192 * 60.00159 * 7 6 5 36 36 H 1.08999 * 109.47316 * 299.99521 * 8 6 5 37 37 H 1.08995 * 109.47033 * 59.99850 * 8 6 5 38 38 H 1.08999 * 109.46979 * 179.97438 * 8 6 5 39 39 H 0.96994 * 120.00097 * 0.02562 * 11 9 6 40 40 H 1.08998 * 112.87460 * 23.86489 * 12 11 9 41 41 H 1.08990 * 113.66623 * 335.39276 * 13 12 11 42 42 H 1.09000 * 113.74113 * 204.35503 * 13 12 11 43 43 H 1.08997 * 113.66031 * 265.08631 * 15 14 13 44 44 H 1.09002 * 113.66187 * 36.15037 * 15 14 13 45 45 H 1.09001 * 113.57949 * 89.86751 * 16 15 14 46 46 H 0.96996 * 119.99947 * 24.99948 * 17 16 15 47 47 H 0.96998 * 120.00169 * 180.02562 * 21 20 18 48 48 H 1.09001 * 113.66026 * 323.85782 * 26 14 13 49 49 H 1.08998 * 113.66179 * 94.82069 * 26 14 13 50 50 H 1.09006 * 113.66074 * 89.56978 * 27 14 13 51 51 H 1.08994 * 113.66448 * 220.62942 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1674 -0.0005 6 6 4.2190 2.4361 -0.0011 7 6 3.8498 3.2386 1.2482 8 6 3.8489 3.2381 -1.2504 9 6 5.7006 2.1608 -0.0010 10 8 6.4540 2.8957 -0.6037 11 7 6.1885 1.0980 0.6690 12 6 7.6289 0.8300 0.6686 13 6 8.1056 0.0245 1.8909 14 6 7.8338 -1.2309 1.0614 15 6 8.6375 -2.5132 1.2812 16 6 7.3838 -3.2757 0.8152 17 7 7.1112 -4.4865 1.5935 18 6 6.3969 -5.5128 1.0354 19 1 6.0349 -5.4298 0.0213 20 6 6.1391 -6.6603 1.7727 21 7 5.4530 -7.6471 1.2361 22 14 6.7671 -6.8047 3.5260 23 1 5.7455 -6.2724 4.4632 24 1 7.0321 -8.2315 3.8410 25 1 8.0229 -6.0250 3.6678 26 6 6.5623 -2.0548 1.2676 27 6 8.0299 -0.3803 -0.1940 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.9716 0.3273 -0.0005 33 1 4.3945 4.1828 1.2475 34 1 2.7782 3.4378 1.2485 35 1 4.1135 2.6672 2.1382 36 1 4.1119 2.6664 -2.1404 37 1 2.7772 3.4372 -1.2500 38 1 4.3935 4.1823 -1.2505 39 1 5.5860 0.5100 1.1507 40 1 8.2256 1.7212 0.4740 41 1 7.4561 0.1234 2.7605 42 1 9.1589 0.1715 2.1297 43 1 9.4882 -2.6170 0.6078 44 1 8.8965 -2.6936 2.3245 45 1 7.3528 -3.4475 -0.2607 46 1 7.4367 -4.5612 2.5042 47 1 5.2725 -8.4488 1.7514 48 1 6.2382 -2.1064 2.3070 49 1 5.7548 -1.7915 0.5844 50 1 9.0622 -0.3463 -0.5425 51 1 7.3198 -0.6048 -0.9899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122242549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:08 Heat of formation + Delta-G solvation = -1.868212 kcal Electronic energy + Delta-G solvation = -30689.452009 eV Core-core repulsion = 26626.012968 eV Total energy + Delta-G solvation = -4063.439041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27836 -40.41595 -39.26432 -36.26815 -35.93791 -34.67419 -33.63751 -32.22708 -31.61764 -30.27291 -27.47598 -26.70932 -25.92821 -25.48819 -24.91503 -23.77249 -21.96622 -21.28295 -20.14756 -19.98878 -19.07988 -18.11622 -17.91226 -17.42188 -16.26917 -15.86671 -15.70467 -15.47442 -15.14481 -15.00621 -14.67421 -14.49525 -14.22588 -14.12837 -13.83075 -13.57180 -13.11029 -12.98539 -12.71501 -12.69567 -12.50801 -12.47485 -12.30569 -12.21301 -12.06643 -11.89303 -11.61665 -11.54204 -11.28280 -11.09646 -10.91084 -10.47954 -10.29996 -10.09889 -10.02043 -9.82208 -9.78625 -9.58304 -9.55041 -9.23695 -9.17575 -8.97157 -7.35411 -5.86404 -3.22150 2.08024 2.57316 2.76601 2.96717 3.29749 3.32640 3.38626 3.93536 4.25702 4.42998 4.48714 4.50364 4.61071 4.68995 4.70626 4.80762 5.01318 5.10818 5.31056 5.33016 5.36747 5.48426 5.49668 5.53267 5.55190 5.59944 5.63446 5.65148 5.69425 5.71546 5.75171 5.85417 5.94624 5.98290 6.04602 6.08389 6.10566 6.14104 6.16793 6.26973 6.31797 6.41595 6.56488 6.69073 6.88749 7.19424 7.69927 7.88280 7.89907 8.33429 8.34070 9.11262 9.84061 10.03901 11.31754 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003295 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.246656 B = 8496.587044 C =10591.838438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.749 5.749 3 C 0.710 3.290 4 O -0.584 6.584 5 N -0.744 5.744 6 C 0.182 3.818 7 C -0.161 4.161 8 C -0.150 4.150 9 C 0.520 3.480 10 O -0.526 6.526 11 N -0.705 5.705 12 C 0.120 3.880 13 C -0.132 4.132 14 C -0.106 4.106 15 C -0.142 4.142 16 C 0.176 3.824 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.144 4.144 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.402 0.598 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.402 0.598 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 19.861 -0.536 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.404 5.404 3 C 0.410 3.590 4 O -0.462 6.462 5 N -0.402 5.402 6 C 0.092 3.908 7 C -0.219 4.219 8 C -0.209 4.209 9 C 0.305 3.695 10 O -0.400 6.400 11 N -0.357 5.357 12 C 0.014 3.986 13 C -0.170 4.170 14 C -0.107 4.107 15 C -0.181 4.181 16 C 0.065 3.935 17 N -0.377 5.377 18 C -0.379 4.379 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.184 4.184 27 C -0.163 4.163 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.235 0.765 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.195 0.805 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.472 21.173 -1.134 21.347 hybrid contribution 0.620 -1.541 1.591 2.300 sum -1.851 19.632 0.456 19.725 Atomic orbital electron populations 1.21415 0.77888 1.02312 1.02144 1.44990 1.07994 1.07294 1.80123 1.15841 0.81253 0.84455 0.77447 1.90865 1.67756 1.29987 1.57590 1.45305 1.05192 1.08671 1.81061 1.20380 0.86588 0.84683 0.99147 1.22224 1.05173 0.99749 0.94754 1.22084 1.04051 1.00050 0.94695 1.20509 0.89957 0.80662 0.78380 1.90727 1.59037 1.47434 1.42838 1.45807 1.08517 1.28559 1.52841 1.21916 0.80937 0.98034 0.97673 1.23156 1.01934 0.95487 0.96444 1.22377 0.99778 0.92401 0.96149 1.23304 0.98352 0.95041 1.01387 1.21482 0.91764 0.84455 0.95827 1.42773 1.65157 1.16073 1.13659 1.19127 1.25918 0.93576 0.99299 0.89191 1.24692 1.00098 0.96314 0.97888 1.69698 1.44274 1.07129 1.36859 0.86566 0.78743 0.77064 0.86235 1.21083 1.21690 1.20312 1.23586 0.94973 0.98449 1.01429 1.23121 1.02192 0.94583 0.96399 0.90415 0.92339 0.92373 0.76484 0.76764 0.91062 0.88705 0.92217 0.92371 0.89340 0.90704 0.76266 0.88101 0.91055 0.88797 0.91807 0.90458 0.89996 0.80489 0.92987 0.90218 0.92648 0.88987 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.81 10.70 59.85 0.64 1.45 16 2 N -0.75 -6.47 5.72 -72.07 -0.41 -6.88 16 3 C 0.71 7.71 7.98 -86.92 -0.69 7.02 16 4 O -0.58 -7.98 12.55 5.29 0.07 -7.92 16 5 N -0.74 -6.89 4.86 -53.51 -0.26 -7.15 16 6 C 0.18 1.87 0.98 -132.97 -0.13 1.74 16 7 C -0.16 -1.57 8.38 37.16 0.31 -1.26 16 8 C -0.15 -1.66 7.93 37.16 0.29 -1.36 16 9 C 0.52 5.87 6.65 -10.99 -0.07 5.80 16 10 O -0.53 -7.58 15.70 5.55 0.09 -7.49 16 11 N -0.71 -6.79 4.95 -52.85 -0.26 -7.06 16 12 C 0.12 1.20 4.32 -66.94 -0.29 0.91 16 13 C -0.13 -1.27 7.59 -26.28 -0.20 -1.47 16 14 C -0.11 -1.21 1.02 -154.71 -0.16 -1.37 16 15 C -0.14 -1.97 7.59 -26.28 -0.20 -2.17 16 16 C 0.18 3.01 4.48 -66.95 -0.30 2.71 16 17 N -0.74 -16.19 5.20 -52.47 -0.27 -16.46 16 18 C -0.25 -6.65 10.45 -15.06 -0.16 -6.81 16 19 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.24 13.97 55.49 0.78 -27.47 16 22 Si 0.88 21.20 27.74 -169.99 -4.71 16.48 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 26 C -0.14 -1.94 6.97 -26.28 -0.18 -2.13 16 27 C -0.12 -1.31 7.64 -26.28 -0.20 -1.51 16 28 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 2.77 8.84 -40.82 -0.36 2.41 16 32 H 0.40 3.12 7.26 -40.82 -0.30 2.82 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.06 6.16 -51.93 -0.32 0.74 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.06 6.16 -51.93 -0.32 0.74 16 38 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 39 H 0.40 3.42 6.75 -40.82 -0.28 3.14 16 40 H 0.10 1.10 7.47 -51.93 -0.39 0.71 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 45 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 46 H 0.36 7.88 5.78 -40.82 -0.24 7.64 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 50 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -33.07 404.28 -8.87 -41.94 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -8.53 Total: 14.29 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.43 Total: 1.62 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.43 Total: -65.02 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.15 Total: -15.41 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.07 -8.87 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122242549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.069 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds