Wall clock time and date at job start Tue Mar 31 2020 21:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47074 * 2 1 4 4 C 1.52995 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47363 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47017 * 304.99133 * 5 4 3 7 7 N 1.46499 * 109.47349 * 64.99521 * 5 4 3 8 8 C 1.34777 * 119.99665 * 60.27955 * 7 5 4 9 9 N 1.34775 * 119.99585 * 179.72218 * 8 7 5 10 10 O 1.21583 * 120.00270 * 359.72083 * 8 7 5 11 11 C 1.50702 * 109.47120 * 185.00034 * 5 4 3 12 12 O 1.21287 * 119.99690 * 259.99803 * 11 5 4 13 13 N 1.34775 * 120.00529 * 79.99732 * 11 5 4 14 14 C 1.47402 * 125.58661 * 0.02562 * 13 11 5 15 15 C 1.54846 * 104.81128 * 204.60968 * 14 13 11 16 16 C 1.55129 * 101.78058 * 322.81904 * 15 14 13 17 17 H 1.08996 * 113.45994 * 158.33475 * 16 15 14 18 18 C 1.54042 * 108.25722 * 285.18539 * 16 15 14 19 19 N 1.46702 * 106.82734 * 135.80678 * 18 16 15 20 20 C 1.36939 * 125.32144 * 161.84126 * 19 18 16 21 21 H 1.08000 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00033 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47453 * 59.99902 * 24 22 20 26 26 H 1.48506 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47388 * 299.99820 * 24 22 20 28 28 C 1.46628 * 109.35804 * 341.81591 * 19 18 16 29 29 C 1.46729 * 125.59105 * 179.72115 * 13 11 5 30 30 H 1.09002 * 111.33263 * 56.12005 * 29 13 11 31 31 H 1.08991 * 109.47611 * 60.00211 * 1 2 3 32 32 H 1.09006 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47145 * 299.99685 * 1 2 3 34 34 H 1.08994 * 109.46879 * 239.99759 * 2 1 3 35 35 H 1.09000 * 109.47023 * 119.99756 * 2 1 3 36 36 H 1.09000 * 109.47677 * 59.99719 * 3 2 1 37 37 H 1.09006 * 109.47206 * 300.00167 * 3 2 1 38 38 H 1.09000 * 109.47279 * 59.99077 * 4 3 2 39 39 H 1.09006 * 109.46770 * 300.00035 * 4 3 2 40 40 H 0.97001 * 119.99790 * 239.99668 * 7 5 4 41 41 H 0.97000 * 120.00523 * 0.02562 * 9 8 7 42 42 H 0.97004 * 120.00164 * 179.97438 * 9 8 7 43 43 H 1.08994 * 110.37018 * 323.44718 * 14 13 11 44 44 H 1.09007 * 110.36427 * 85.67005 * 14 13 11 45 45 H 1.09000 * 110.97039 * 80.94050 * 15 14 13 46 46 H 1.09001 * 110.96655 * 204.69783 * 15 14 13 47 47 H 1.09006 * 109.98656 * 255.14738 * 18 16 15 48 48 H 1.09004 * 109.98981 * 16.45978 * 18 16 15 49 49 H 0.96997 * 120.00446 * 180.02562 * 23 22 20 50 50 H 1.08998 * 109.75925 * 120.92557 * 28 19 18 51 51 H 1.08995 * 109.76249 * 241.63328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6451 3.4245 -0.8414 7 7 3.6928 3.5393 1.2523 8 6 4.1224 3.0465 2.4309 9 7 3.7709 3.6517 3.5826 10 8 4.8270 2.0560 2.4550 11 6 5.5818 2.8869 -0.1245 12 8 6.2718 3.0394 0.8613 13 7 6.1583 2.7192 -1.3311 14 6 5.4418 2.5251 -2.6046 15 6 6.4466 1.7761 -3.5139 16 6 7.7914 2.4361 -3.1109 17 1 8.6624 1.8235 -3.3438 18 6 7.8459 3.8421 -3.7379 19 7 8.3453 4.7508 -2.7001 20 6 8.8714 5.9952 -2.9236 21 1 8.9436 6.3779 -3.9309 22 6 9.3119 6.7646 -1.8555 23 7 9.2235 6.2983 -0.6279 24 14 10.0302 8.4617 -2.1605 25 1 9.0140 9.3175 -2.8240 26 1 10.4233 9.0729 -0.8654 27 1 11.2249 8.3439 -3.0345 28 6 8.1926 4.1185 -1.3859 29 6 7.6019 2.7061 -1.5934 30 1 8.1076 1.9518 -0.9906 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.9330 0.9287 -0.8908 39 1 3.9336 0.9286 0.8892 40 1 3.1307 4.3296 1.2329 41 1 3.2084 4.4418 3.5634 42 1 4.0797 3.2969 4.4309 43 1 4.5479 1.9212 -2.4487 44 1 5.1770 3.4881 -3.0414 45 1 6.4537 0.7090 -3.2914 46 1 6.2259 1.9519 -4.5668 47 1 8.5235 3.8433 -4.5917 48 1 6.8484 4.1485 -4.0529 49 1 9.5309 6.8360 0.1185 50 1 9.1660 4.0323 -0.9032 51 1 7.5251 4.7157 -0.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190474543.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:54 Heat of formation + Delta-G solvation = -36.658035 kcal Electronic energy + Delta-G solvation = -31770.539415 eV Core-core repulsion = 27705.591775 eV Total energy + Delta-G solvation = -4064.947641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54269 -39.44891 -37.49880 -36.15880 -34.68702 -34.09469 -33.36620 -32.10875 -30.77096 -30.45700 -28.79912 -26.96133 -25.93886 -24.63543 -23.09468 -22.38327 -21.53368 -20.89936 -20.25789 -19.48203 -18.60224 -18.29064 -17.09961 -16.84429 -16.37670 -15.90081 -15.60201 -14.97579 -14.72565 -14.65749 -14.14843 -14.07629 -13.92605 -13.76630 -13.64737 -13.30324 -12.99085 -12.77843 -12.67540 -12.51916 -12.08093 -11.89656 -11.69954 -11.48307 -11.33307 -11.21056 -11.01981 -10.98103 -10.92545 -10.71880 -10.66295 -10.40357 -10.18309 -10.09662 -9.87268 -9.76590 -9.64026 -9.52795 -9.39089 -8.62692 -8.48116 -7.97018 -6.75111 -5.61705 -2.98146 2.86272 3.28276 3.43028 3.44522 3.47075 3.49579 3.69065 4.53141 4.54650 4.60206 4.77816 4.80152 4.85448 4.92728 5.05324 5.16014 5.20511 5.25204 5.31579 5.53962 5.56798 5.58916 5.60084 5.66362 5.71232 5.77170 5.80259 5.84830 5.90627 5.93152 6.04710 6.08911 6.14922 6.28987 6.33165 6.41025 6.52742 6.58679 6.66205 6.73976 6.80917 6.96473 7.08362 7.63793 7.74287 7.97122 8.12421 8.14782 8.35794 8.79481 8.96856 9.29363 9.90584 10.54758 11.47455 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003612 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.571631 B = 7750.394511 C = 9095.220862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.134 4.134 5 C 0.160 3.840 6 H 0.103 0.897 7 N -0.732 5.732 8 C 0.712 3.288 9 N -0.872 5.872 10 O -0.564 6.564 11 C 0.513 3.487 12 O -0.496 6.496 13 N -0.606 5.606 14 C 0.098 3.902 15 C -0.123 4.123 16 C -0.111 4.111 17 H 0.095 0.905 18 C 0.144 3.856 19 N -0.603 5.603 20 C -0.234 4.234 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.914 5.914 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.181 3.819 29 C 0.116 3.884 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.397 0.603 41 H 0.392 0.608 42 H 0.412 0.588 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.033 0.967 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.048 0.952 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 -10.515 -0.174 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.172 4.172 5 C 0.050 3.950 6 H 0.121 0.879 7 N -0.388 5.388 8 C 0.411 3.589 9 N -0.441 5.441 10 O -0.438 6.438 11 C 0.298 3.702 12 O -0.368 6.368 13 N -0.343 5.343 14 C -0.025 4.025 15 C -0.162 4.162 16 C -0.131 4.131 17 H 0.113 0.887 18 C 0.017 3.983 19 N -0.329 5.329 20 C -0.362 4.362 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.561 5.561 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.055 3.945 29 C 0.013 3.987 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.231 0.769 41 H 0.219 0.781 42 H 0.243 0.757 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.702 -11.111 0.467 20.906 hybrid contribution 0.018 1.743 0.123 1.747 sum -17.684 -9.368 0.590 20.021 Atomic orbital electron populations 1.21767 0.96051 1.01400 1.01637 1.21512 0.95559 0.96994 1.02138 1.21550 0.94751 0.96790 1.01869 1.22009 0.95687 0.94818 1.04721 1.20641 0.92600 0.95543 0.86232 0.87918 1.44665 1.56473 1.33410 1.04272 1.15802 0.79416 0.83220 0.80473 1.42952 1.58943 1.34384 1.07790 1.90952 1.39847 1.27210 1.85813 1.20323 0.90041 0.77779 0.82097 1.90796 1.63978 1.46371 1.35614 1.48370 1.07354 1.72543 1.05991 1.22347 0.95396 0.99908 0.84888 1.22739 0.94908 0.99180 0.99349 1.23146 0.97124 0.97936 0.94894 0.88673 1.21286 0.96681 0.87748 0.92547 1.44208 1.72592 1.15159 1.00956 1.18953 1.33837 0.90356 0.93044 0.90542 1.24846 1.01437 0.98697 0.95379 1.69999 1.51734 1.36800 0.97561 0.86230 0.78956 0.84043 0.76664 1.21267 1.21660 1.21168 1.21340 0.99096 0.86670 0.87364 1.22753 0.80524 1.00627 0.94832 0.90519 0.92802 0.92959 0.92937 0.92008 0.92039 0.91977 0.92147 0.90831 0.88691 0.76937 0.78145 0.75679 0.91267 0.91333 0.91113 0.90088 0.94880 0.96507 0.93675 0.93379 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.11 -1.01 5.10 -26.74 -0.14 -1.15 16 4 C -0.13 -1.60 4.40 -26.74 -0.12 -1.72 16 5 C 0.16 2.18 2.28 -69.08 -0.16 2.03 16 6 H 0.10 1.14 7.67 -51.93 -0.40 0.75 16 7 N -0.73 -9.38 4.66 -59.82 -0.28 -9.66 16 8 C 0.71 10.89 7.59 -86.92 -0.66 10.23 16 9 N -0.87 -9.34 8.88 27.63 0.25 -9.09 16 10 O -0.56 -11.29 13.03 -18.24 -0.24 -11.53 16 11 C 0.51 9.83 6.41 -10.99 -0.07 9.76 16 12 O -0.50 -12.05 13.64 -17.98 -0.25 -12.29 16 13 N -0.61 -10.92 2.98 -161.81 -0.48 -11.40 16 14 C 0.10 1.32 5.93 -2.58 -0.02 1.30 16 15 C -0.12 -1.55 6.34 -24.63 -0.16 -1.71 16 16 C -0.11 -1.89 4.28 -87.73 -0.38 -2.26 16 17 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 18 C 0.14 2.92 6.46 -3.39 -0.02 2.89 16 19 N -0.60 -15.75 3.38 -171.40 -0.58 -16.33 16 20 C -0.23 -6.66 10.25 -15.06 -0.15 -6.81 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 23 N -0.91 -28.36 10.24 55.49 0.57 -27.79 16 24 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.18 4.74 4.94 -3.19 -0.02 4.72 16 29 C 0.12 2.39 3.66 -65.80 -0.24 2.15 16 30 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.82 6.60 -51.93 -0.34 0.48 16 39 H 0.09 1.46 6.05 -51.93 -0.31 1.14 16 40 H 0.40 3.72 8.84 -40.82 -0.36 3.35 16 41 H 0.39 2.83 8.84 -40.82 -0.36 2.46 16 42 H 0.41 4.09 8.93 -40.82 -0.36 3.72 16 43 H 0.07 0.72 6.03 -51.93 -0.31 0.41 16 44 H 0.07 0.97 7.24 -51.92 -0.38 0.59 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.34 6.59 -51.93 -0.34 0.00 16 49 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.05 1.44 7.33 -51.93 -0.38 1.05 16 51 H 0.05 1.58 6.80 -51.93 -0.35 1.22 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -38.97 390.95 -10.65 -49.62 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.50 Total: 7.70 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: -2.01 Total: 17.22 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -0.53 Total: -74.27 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.48 Total: -23.83 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.97 -10.65 -49.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190474543.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.957 kcal (2) G-P(sol) polarization free energy of solvation -38.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds