Wall clock time and date at job start Tue Mar 31 2020 21:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47074 * 2 1 4 4 C 1.52995 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47363 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47017 * 304.99133 * 5 4 3 7 7 N 1.46499 * 109.47349 * 64.99521 * 5 4 3 8 8 C 1.34777 * 119.99665 * 60.27955 * 7 5 4 9 9 N 1.34775 * 119.99585 * 179.72218 * 8 7 5 10 10 O 1.21583 * 120.00270 * 359.72083 * 8 7 5 11 11 C 1.50702 * 109.47120 * 185.00034 * 5 4 3 12 12 O 1.21287 * 119.99690 * 259.99803 * 11 5 4 13 13 N 1.34775 * 120.00529 * 79.99732 * 11 5 4 14 14 C 1.47402 * 125.58661 * 0.02562 * 13 11 5 15 15 C 1.54846 * 104.81128 * 204.60968 * 14 13 11 16 16 C 1.55129 * 101.78058 * 322.81904 * 15 14 13 17 17 H 1.08996 * 113.45994 * 158.33475 * 16 15 14 18 18 C 1.54042 * 108.25722 * 285.18539 * 16 15 14 19 19 N 1.46702 * 106.82734 * 135.80678 * 18 16 15 20 20 C 1.36939 * 125.32144 * 161.84126 * 19 18 16 21 21 H 1.08000 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00033 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47453 * 59.99902 * 24 22 20 26 26 H 1.48506 * 109.47057 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47388 * 299.99820 * 24 22 20 28 28 C 1.46628 * 109.35804 * 341.81591 * 19 18 16 29 29 C 1.46729 * 125.59105 * 179.72115 * 13 11 5 30 30 H 1.09002 * 111.33263 * 56.12005 * 29 13 11 31 31 H 1.08991 * 109.47611 * 60.00211 * 1 2 3 32 32 H 1.09006 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47145 * 299.99685 * 1 2 3 34 34 H 1.08994 * 109.46879 * 239.99759 * 2 1 3 35 35 H 1.09000 * 109.47023 * 119.99756 * 2 1 3 36 36 H 1.09000 * 109.47677 * 59.99719 * 3 2 1 37 37 H 1.09006 * 109.47206 * 300.00167 * 3 2 1 38 38 H 1.09000 * 109.47279 * 59.99077 * 4 3 2 39 39 H 1.09006 * 109.46770 * 300.00035 * 4 3 2 40 40 H 0.97001 * 119.99790 * 239.99668 * 7 5 4 41 41 H 0.97000 * 120.00523 * 0.02562 * 9 8 7 42 42 H 0.97004 * 120.00164 * 179.97438 * 9 8 7 43 43 H 1.08994 * 110.37018 * 323.44718 * 14 13 11 44 44 H 1.09007 * 110.36427 * 85.67005 * 14 13 11 45 45 H 1.09000 * 110.97039 * 80.94050 * 15 14 13 46 46 H 1.09001 * 110.96655 * 204.69783 * 15 14 13 47 47 H 1.09006 * 109.98656 * 255.14738 * 18 16 15 48 48 H 1.09004 * 109.98981 * 16.45978 * 18 16 15 49 49 H 0.96997 * 120.00446 * 180.02562 * 23 22 20 50 50 H 1.08998 * 109.75925 * 120.92557 * 28 19 18 51 51 H 1.08995 * 109.76249 * 241.63328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6451 3.4245 -0.8414 7 7 3.6928 3.5393 1.2523 8 6 4.1224 3.0465 2.4309 9 7 3.7709 3.6517 3.5826 10 8 4.8270 2.0560 2.4550 11 6 5.5818 2.8869 -0.1245 12 8 6.2718 3.0394 0.8613 13 7 6.1583 2.7192 -1.3311 14 6 5.4418 2.5251 -2.6046 15 6 6.4466 1.7761 -3.5139 16 6 7.7914 2.4361 -3.1109 17 1 8.6624 1.8235 -3.3438 18 6 7.8459 3.8421 -3.7379 19 7 8.3453 4.7508 -2.7001 20 6 8.8714 5.9952 -2.9236 21 1 8.9436 6.3779 -3.9309 22 6 9.3119 6.7646 -1.8555 23 7 9.2235 6.2983 -0.6279 24 14 10.0302 8.4617 -2.1605 25 1 9.0140 9.3175 -2.8240 26 1 10.4233 9.0729 -0.8654 27 1 11.2249 8.3439 -3.0345 28 6 8.1926 4.1185 -1.3859 29 6 7.6019 2.7061 -1.5934 30 1 8.1076 1.9518 -0.9906 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.9330 0.9287 -0.8908 39 1 3.9336 0.9286 0.8892 40 1 3.1307 4.3296 1.2329 41 1 3.2084 4.4418 3.5634 42 1 4.0797 3.2969 4.4309 43 1 4.5479 1.9212 -2.4487 44 1 5.1770 3.4881 -3.0414 45 1 6.4537 0.7090 -3.2914 46 1 6.2259 1.9519 -4.5668 47 1 8.5235 3.8433 -4.5917 48 1 6.8484 4.1485 -4.0529 49 1 9.5309 6.8360 0.1185 50 1 9.1660 4.0323 -0.9032 51 1 7.5251 4.7157 -0.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190474543.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:53 Heat of formation + Delta-G solvation = -67.073043 kcal Electronic energy + Delta-G solvation = -31771.858309 eV Core-core repulsion = 27705.591775 eV Total energy + Delta-G solvation = -4066.266534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86541 -40.78306 -38.97281 -37.14029 -36.47315 -35.15867 -34.41040 -33.89774 -32.39505 -31.45631 -30.44928 -28.27883 -27.28636 -26.54825 -24.15253 -23.52804 -22.79319 -22.15456 -21.52249 -20.87210 -19.87556 -19.57311 -18.83638 -18.15978 -17.81707 -17.07277 -16.84896 -16.59495 -16.02328 -15.90748 -15.60768 -15.43327 -15.22860 -15.02690 -14.68276 -14.65424 -14.34545 -14.08633 -13.86991 -13.72921 -13.55843 -13.33101 -12.98726 -12.84874 -12.80700 -12.67367 -12.38874 -12.22204 -12.11952 -11.97404 -11.85681 -11.81763 -11.72405 -11.55151 -11.41948 -11.36931 -11.16409 -10.80831 -10.72591 -10.45794 -9.83967 -9.47704 -8.90565 -7.83703 -5.23140 1.40891 1.45804 1.52378 1.67038 1.94739 2.21921 2.47074 2.48856 3.32320 3.40599 3.60695 3.66844 3.74854 3.82130 3.92755 3.99034 4.04515 4.19803 4.27207 4.29245 4.46212 4.48216 4.53657 4.56179 4.64987 4.76177 4.86401 4.89358 4.92036 4.96885 5.04974 5.08990 5.15507 5.21347 5.26788 5.34394 5.37101 5.40932 5.43361 5.44833 5.53308 5.56544 5.67756 5.80376 5.95230 6.10851 6.17423 6.73889 7.06654 7.18479 7.38989 7.78650 7.85262 8.41208 9.23963 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.003612 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.571631 B = 7750.394511 C = 9095.220862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.122 4.122 5 C 0.166 3.834 6 H 0.140 0.860 7 N -0.723 5.723 8 C 0.702 3.298 9 N -0.855 5.855 10 O -0.616 6.616 11 C 0.497 3.503 12 O -0.562 6.562 13 N -0.607 5.607 14 C 0.089 3.911 15 C -0.106 4.106 16 C -0.100 4.100 17 H 0.110 0.890 18 C 0.137 3.863 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.091 0.909 22 C -0.074 4.074 23 N -0.954 5.954 24 Si 0.982 3.018 25 H -0.271 1.271 26 H -0.301 1.301 27 H -0.273 1.273 28 C 0.203 3.797 29 C 0.118 3.882 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.415 0.585 41 H 0.410 0.590 42 H 0.416 0.584 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.116 0.884 47 H 0.044 0.956 48 H 0.037 0.963 49 H 0.241 0.759 50 H -0.011 1.011 51 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.759 -10.995 -3.647 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.161 4.161 5 C 0.056 3.944 6 H 0.157 0.843 7 N -0.381 5.381 8 C 0.400 3.600 9 N -0.425 5.425 10 O -0.494 6.494 11 C 0.285 3.715 12 O -0.438 6.438 13 N -0.342 5.342 14 C -0.032 4.032 15 C -0.144 4.144 16 C -0.120 4.120 17 H 0.128 0.872 18 C 0.013 3.987 19 N -0.349 5.349 20 C -0.370 4.370 21 H 0.109 0.891 22 C -0.267 4.267 23 N -0.603 5.603 24 Si 0.810 3.190 25 H -0.197 1.197 26 H -0.228 1.228 27 H -0.198 1.198 28 C 0.077 3.923 29 C 0.013 3.987 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.241 0.759 42 H 0.248 0.752 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.134 0.866 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.008 0.992 51 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -20.795 -11.568 -3.086 23.996 hybrid contribution 0.988 1.899 1.202 2.455 sum -19.807 -9.670 -1.884 22.122 Atomic orbital electron populations 1.21741 0.94863 1.01872 1.02103 1.21502 0.96547 0.96466 1.01688 1.21500 0.92140 0.97458 1.02916 1.21912 0.97745 0.92976 1.03485 1.20784 0.88515 0.97496 0.87556 0.84298 1.44575 1.56094 1.33869 1.03527 1.16156 0.79109 0.82944 0.81798 1.42763 1.58403 1.34524 1.06795 1.90920 1.42173 1.29646 1.86702 1.21533 0.92362 0.76158 0.81479 1.90763 1.65921 1.49200 1.37948 1.48489 1.06422 1.71650 1.07615 1.22729 0.96836 1.00991 0.82612 1.22795 0.90700 0.99905 1.00963 1.23135 1.00819 0.96881 0.91129 0.87230 1.21588 0.97314 0.88327 0.91473 1.44513 1.72563 1.15506 1.02350 1.19482 1.32602 0.91366 0.93516 0.89105 1.25808 1.02718 1.03033 0.95118 1.70326 1.53514 1.38045 0.98423 0.85101 0.78643 0.79180 0.76112 1.19661 1.22813 1.19842 1.20816 0.95261 0.89462 0.86810 1.22408 0.82395 0.96225 0.97674 0.92233 0.91648 0.92570 0.93131 0.91199 0.93870 0.92423 0.89510 0.89533 0.92522 0.74824 0.75928 0.75217 0.87032 0.91356 0.88697 0.86599 0.93800 0.94514 0.95008 0.99236 0.98234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.10 -1.55 5.10 30.59 0.16 -1.39 16 4 C -0.12 -2.72 4.40 30.59 0.13 -2.58 16 5 C 0.17 4.33 2.28 44.24 0.10 4.43 16 6 H 0.14 2.58 7.67 -2.39 -0.02 2.57 16 7 N -0.72 -18.19 4.66 -461.42 -2.15 -20.34 16 8 C 0.70 22.08 7.59 179.05 1.36 23.44 16 9 N -0.86 -18.51 8.88 -184.75 -1.64 -20.16 16 10 O -0.62 -26.14 13.03 18.52 0.24 -25.89 16 11 C 0.50 19.50 6.41 87.66 0.56 20.06 16 12 O -0.56 -29.28 13.64 19.45 0.27 -29.01 16 13 N -0.61 -21.59 2.98 -784.25 -2.34 -23.93 16 14 C 0.09 2.05 5.93 86.84 0.52 2.57 16 15 C -0.11 -2.12 6.34 31.95 0.20 -1.92 16 16 C -0.10 -3.17 4.28 -8.92 -0.04 -3.21 16 17 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 18 C 0.14 5.30 6.46 86.69 0.56 5.86 16 19 N -0.62 -33.20 3.38 -696.20 -2.35 -35.55 16 20 C -0.24 -13.91 10.25 84.03 0.86 -13.05 16 21 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 22 C -0.07 -4.48 5.48 84.86 0.47 -4.01 16 23 N -0.95 -63.07 10.24 21.65 0.22 -62.85 16 24 Si 0.98 47.82 29.55 68.60 2.03 49.84 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 27 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 28 C 0.20 11.34 4.94 86.86 0.43 11.77 16 29 C 0.12 4.99 3.66 46.25 0.17 5.16 16 30 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.94 7.75 -2.39 -0.02 0.92 16 37 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.09 1.65 6.60 -2.39 -0.02 1.64 16 39 H 0.06 1.76 6.05 -2.38 -0.01 1.75 16 40 H 0.42 7.14 8.84 -92.71 -0.82 6.32 16 41 H 0.41 5.61 8.84 -92.71 -0.82 4.79 16 42 H 0.42 8.51 8.93 -92.71 -0.83 7.68 16 43 H 0.11 1.67 6.03 -2.39 -0.01 1.66 16 44 H 0.07 1.62 7.24 -2.38 -0.02 1.60 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.12 1.66 8.07 -2.39 -0.02 1.64 16 47 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.04 1.31 6.59 -2.39 -0.02 1.30 16 49 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 50 H -0.01 -0.69 7.33 -2.39 -0.02 -0.71 16 51 H 0.00 -0.04 6.80 -2.39 -0.02 -0.05 16 Total: -1.00 -96.39 390.95 -0.86 -97.25 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.50 Total: 26.14 kcal Atomic # 6 Polarization: 38.13 SS G_CDS: 6.37 Total: 44.51 kcal Atomic # 7 Polarization: -154.57 SS G_CDS: -8.26 Total: -162.83 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: 0.51 Total: -54.91 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -96.39 -0.86 -97.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190474543.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.173 kcal (2) G-P(sol) polarization free energy of solvation -96.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds